Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:17:39 (3066525): wrapper (7.7.26015): starting
03:17:39 (3066525): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 03:17:39] Arguments: --nthreads 4
[2026-01-10 03:17:39] Threads: 4
[2026-01-10 03:17:39] Checking for CVMFS
[2026-01-10 03:17:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:17:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:17:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:17:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:17:40] 2.9.2.0 2358452 2324 95228 154964 1 56 35907798 36864001 0 130560 0 1838105 99.990 85462 5024 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 03:17:40] CVMFS is ok
[2026-01-10 03:17:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 03:17:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 03:17:40] Further information can be found at the LHC@home message board.
[2026-01-10 03:17:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:17:40] Checking for apptainer binary...
[2026-01-10 03:17:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 03:17:40] Running /usr/bin/apptainer --version
[2026-01-10 03:17:40] apptainer version 1.4.1-1.1
[2026-01-10 03:17:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:17:40] thA317a
[2026-01-10 03:17:40] apptainer works
[2026-01-10 03:17:40] Set ATHENA_PROC_NUMBER=4
[2026-01-10 03:17:40] Set ATHENA_CORE_NUMBER=4
[2026-01-10 03:17:40] Starting ATLAS job with PandaID=6963162606
[2026-01-10 03:17:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:45:59]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,930 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,931 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,931 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:45:59] 2026-01-10 03:45:18,931 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,931 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:45:59] 2026-01-10 03:45:18,931 | INFO     | job 6963162606 has completed (purged errors)
[2026-01-10 04:45:59] 2026-01-10 03:45:18,931 | INFO     | overall cleanup function is called
[2026-01-10 04:45:59] 2026-01-10 03:45:19,937 | INFO     | --- collectZombieJob: --- 10, [3076854]
[2026-01-10 04:45:59] 2026-01-10 03:45:19,937 | INFO     | zombie collector waiting for pid 3076854
[2026-01-10 04:45:59] 2026-01-10 03:45:19,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:45:59] 2026-01-10 03:45:19,937 | INFO     | collected zombie processes
[2026-01-10 04:45:59] 2026-01-10 03:45:19,937 | INFO     | will attempt to kill all subprocesses of pid=3076854
[2026-01-10 04:45:59] 2026-01-10 03:45:19,994 | INFO     | process IDs to be killed: [3076854] (in reverse order)
[2026-01-10 04:45:59] 2026-01-10 03:45:20,022 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:45:59] 2026-01-10 03:45:20,022 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:45:59] 2026-01-10 03:45:20,024 | INFO     | did not find any defunct processes belonging to 3076854
[2026-01-10 04:45:59] 2026-01-10 03:45:20,025 | INFO     | did not find any defunct processes belonging to 3076854
[2026-01-10 04:45:59] 2026-01-10 03:45:20,025 | INFO     | ready for new job
[2026-01-10 04:45:59] 2026-01-10 03:45:20,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:45:59] 2026-01-10 03:45:20,026 | INFO     | ***************************************
[2026-01-10 04:45:59] 2026-01-10 03:45:20,026 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:45:59] 2026-01-10 03:45:20,026 | INFO     | ***************************************
[2026-01-10 04:45:59] 2026-01-10 03:45:20,026 | INFO     | 
[2026-01-10 04:45:59] 2026-01-10 03:45:20,027 | INFO     | architecture information:
[2026-01-10 04:45:59] 2026-01-10 03:45:20,027 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:45:59] 2026-01-10 03:45:20,036 | INFO     | cat /etc/os-release:
[2026-01-10 04:45:59] NAME="CentOS Linux"
[2026-01-10 04:45:59] VERSION="7 (Core)"
[2026-01-10 04:45:59] ID="centos"
[2026-01-10 04:45:59] ID_LIKE="rhel fedora"
[2026-01-10 04:45:59] VERSION_ID="7"
[2026-01-10 04:45:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:45:59] ANSI_COLOR="0;31"
[2026-01-10 04:45:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:45:59] HOME_URL="https://www.centos.org/"
[2026-01-10 04:45:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:45:59] 
[2026-01-10 04:45:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:45:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:45:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:45:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:45:59] 
[2026-01-10 04:45:59] 2026-01-10 03:45:20,036 | INFO     | ***************************************
[2026-01-10 04:45:59] 2026-01-10 03:45:20,539 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 04:45:59] 2026-01-10 03:45:20,550 | INFO     | sufficient remaining disk space (223581569024 B)
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | INFO     | update_server=False
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | INFO     | aborting loop
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:45:59] 2026-01-10 03:45:20,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:45:59] 2026-01-10 03:45:20,884 | INFO     | all data control threads have been joined
[2026-01-10 04:45:59] 2026-01-10 03:45:21,174 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:45:59] 2026-01-10 03:45:21,386 | INFO     | all payload control threads have been joined
[2026-01-10 04:45:59] 2026-01-10 03:45:21,555 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:21,556 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:21,556 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:21,863 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:21,890 | INFO     | [data] control thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:21,901 | INFO     | all job control threads have been joined
[2026-01-10 04:45:59] 2026-01-10 03:45:22,372 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:22,391 | INFO     | [payload] control thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:22,592 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:22,842 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:22,863 | INFO     | [job] validate thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:22,906 | INFO     | [job] control thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:22,939 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:22,945 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:23,180 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:24,556 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:31,518 | INFO     | job.realtimelogging is not enabled
[2026-01-10 04:45:59] 2026-01-10 03:45:32,523 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:45:59] 2026-01-10 03:45:51,337 | INFO     | PID=3070304 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 04:45:59] 2026-01-10 03:45:51,338 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:45:59] 2026-01-10 03:45:51,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:45:59] 2026-01-10 03:45:51,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:45:59] 2026-01-10 03:45:52,027 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:45:59] 2026-01-10 03:45:53,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981901526848)>', '<ExcThread(monitor, started 139981423105792)>']
[2026-01-10 04:45:59] 2026-01-10 03:45:54,350 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:45:59] 2026-01-10 03:45:54,350 | INFO     | [monitor] control thread has ended
[2026-01-10 04:45:59] 2026-01-10 03:45:58,951 | INFO     | all workflow threads have been joined
[2026-01-10 04:45:59] 2026-01-10 03:45:58,951 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:45:59] 2026-01-10 03:45:58,951 | INFO     | traces error code: 0
[2026-01-10 04:45:59] 2026-01-10 03:45:58,951 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:45:59] 2026-01-10 03:45:58,999 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:45:59] 2026-01-10 03:45:59,002 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:45:59] 2026-01-10 03:45:59,004 [wrapper] pilotpid: 3070304
[2026-01-10 04:45:59] 2026-01-10 03:45:59,006 [wrapper] Pilot exit status: 0
[2026-01-10 04:45:59] 2026-01-10 03:45:59,014 [wrapper] pandaids: 6963162606
[2026-01-10 04:45:59] 2026-01-10 03:45:59,032 [wrapper] cleanup supervisor_pilot 3089485 3070305
[2026-01-10 04:45:59] 2026-01-10 03:45:59,035 [wrapper] Test setup, not cleaning
[2026-01-10 04:45:59] 2026-01-10 03:45:59,037 [wrapper] apfmon messages muted
[2026-01-10 04:45:59] 2026-01-10 03:45:59,039 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:45:59] 2026-01-10 03:45:59,042 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:45:59]  *** Error codes and diagnostics ***
[2026-01-10 04:45:59]     "exeErrorCode": 0,
[2026-01-10 04:45:59]     "exeErrorDiag": "",
[2026-01-10 04:45:59]     "pilotErrorCode": 0,
[2026-01-10 04:45:59]     "pilotErrorDiag": "",
[2026-01-10 04:45:59]  *** Listing of results directory ***
[2026-01-10 04:45:59] total 445256
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 04:45:59] -rwx------ 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc       100 Jan 10 03:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:45:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 03:17 run_atlas
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc       105 Jan 10 03:17 job.xml
[2026-01-10 04:45:59] -rw-r--r-- 2 boinc boinc 226080778 Jan 10 03:17 EVNT.47898824._001302.pool.root.1
[2026-01-10 04:45:59] -rw-r--r-- 2 boinc boinc    592405 Jan 10 03:17 input.tar.gz
[2026-01-10 04:45:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:17 start_atlas.sh
[2026-01-10 04:45:59] drwxrwx--x 2 boinc boinc      4096 Jan 10 03:17 shared
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:17 boinc_setup_complete
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc      6439 Jan 10 03:17 init_data.xml
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 03:17 boinc_lockfile
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc      2520 Jan 10 03:17 pandaJob.out
[2026-01-10 04:45:59] -rw------- 1 boinc boinc    989382 Jan 10 03:17 agis_schedconf.cvmfs.json
[2026-01-10 04:45:59] -rw------- 1 boinc boinc   1516240 Jan 10 03:17 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:45:59] drwx------ 5 boinc boinc      4096 Jan 10 03:17 pilot3
[2026-01-10 04:45:59] -rw------- 1 boinc boinc 223868929 Jan 10 04:44 HITS.47898826._034162.pool.root.1
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc       529 Jan 10 04:44 boinc_task_state.xml
[2026-01-10 04:45:59] -rw------- 1 boinc boinc      1016 Jan 10 04:45 memory_monitor_summary.json
[2026-01-10 04:45:59] -rw------- 1 boinc boinc    273301 Jan 10 04:45 log.47898826._034162.job.log.tgz.1
[2026-01-10 04:45:59] -rw------- 1 boinc boinc        95 Jan 10 04:45 pilot_heartbeat.json
[2026-01-10 04:45:59] -rw------- 1 boinc boinc      7750 Jan 10 04:45 heartbeat.json
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc      8192 Jan 10 04:45 boinc_mmap_file
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc        27 Jan 10 04:45 wrapper_checkpoint.txt
[2026-01-10 04:45:59] -rw------- 1 boinc boinc      4824 Jan 10 04:45 pilotlog.txt
[2026-01-10 04:45:59] -rw------- 1 boinc boinc    768534 Jan 10 04:45 log.47898826._034162.job.log.1
[2026-01-10 04:45:59] -rw------- 1 boinc boinc       357 Jan 10 04:45 output.list
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc       620 Jan 10 04:45 runtime_log
[2026-01-10 04:45:59] -rw------- 1 boinc boinc   1064960 Jan 10 04:45 result.tar.gz
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc      8902 Jan 10 04:45 runtime_log.err
[2026-01-10 04:45:59] -rw------- 1 boinc boinc       659 Jan 10 04:45 LRgNDmx0Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwvlKDmWKTwbm.diag
[2026-01-10 04:45:59] -rw-r--r-- 1 boinc boinc     12642 Jan 10 04:45 stderr.txt
[2026-01-10 04:45:59] HITS file was successfully produced:
[2026-01-10 04:45:59] -rw------- 1 boinc boinc 223868929 Jan 10 04:44 shared/HITS.pool.root.1
[2026-01-10 04:45:59]  *** Contents of shared directory: ***
[2026-01-10 04:45:59] total 441052
[2026-01-10 04:45:59] -rw-r--r-- 2 boinc boinc 226080778 Jan 10 03:17 ATLAS.root_0
[2026-01-10 04:45:59] -rw-r--r-- 2 boinc boinc    592405 Jan 10 03:17 input.tar.gz
[2026-01-10 04:45:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 03:17 start_atlas.sh
[2026-01-10 04:45:59] -rw------- 1 boinc boinc 223868929 Jan 10 04:44 HITS.pool.root.1
[2026-01-10 04:45:59] -rw------- 1 boinc boinc   1064960 Jan 10 04:45 result.tar.gz
04:46:00 (3066525): run_atlas exited; CPU time 20003.424655
04:46:00 (3066525): called boinc_finish(0)

</stderr_txt>
]]>

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