Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:01:51 (215526): wrapper (7.7.26015): starting
12:01:51 (215526): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 12:01:51] Arguments: --nthreads 9
[2026-01-09 12:01:51] Threads: 9
[2026-01-09 12:01:51] Checking for CVMFS
[2026-01-09 12:01:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:01:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:01:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:01:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:01:52] 2.13.3.0 12460 93683 220804 154950 3 348 19058536 32935937 23627 16776704 0 909857554 99.639 875608934 36075 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 12:01:52] CVMFS is ok
[2026-01-09 12:01:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:01:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:01:52] Further information can be found at the LHC@home message board.
[2026-01-09 12:01:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:01:52] Checking for apptainer binary...
[2026-01-09 12:01:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:01:52] Running /usr/bin/apptainer --version
[2026-01-09 12:01:52] apptainer version 1.4.5-2.el9
[2026-01-09 12:01:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:01:52] c7-6-31.aglt2.org
[2026-01-09 12:01:52] apptainer works
[2026-01-09 12:01:52] Set ATHENA_PROC_NUMBER=9
[2026-01-09 12:01:52] Set ATHENA_CORE_NUMBER=9
[2026-01-09 12:01:53] Starting ATLAS job with PandaID=6963146919
[2026-01-09 12:01:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:46:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:46:22] 2026-01-09 22:45:39,219 | INFO     | monitor loop #1341: job 0:6963146919 is in state 'finished'
[2026-01-09 17:46:22] 2026-01-09 22:45:39,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:46:22] 2026-01-09 22:45:39,738 | INFO     | time since job start (20603s) is within the limit (349056.0s)
[2026-01-09 17:46:22] 2026-01-09 22:45:41,730 | INFO     | monitor loop #1342: job 0:6963146919 is in state 'finished'
[2026-01-09 17:46:22] 2026-01-09 22:45:41,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:46:22] 2026-01-09 22:45:41,745 | INFO     | time since job start (20605s) is within the limit (349056.0s)
[2026-01-09 17:46:22] 2026-01-09 22:45:43,760 | INFO     | time since job start (20607s) is within the limit (349056.0s)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,238 | INFO     | monitor loop #1343: job 0:6963146919 is in state 'finished'
[2026-01-09 17:46:22] 2026-01-09 22:45:44,238 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,473 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 17:46:22] 2026-01-09 22:45:44,485 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3315.3485416666667
[2026-01-09 17:46:22] 2026-01-09 22:45:44,499 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963146919/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,501 | INFO     | extracted standard info from prmon json
[2026-01-09 17:46:22] 2026-01-09 22:45:44,501 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 17:46:22] 2026-01-09 22:45:44,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 17:46:22] 2026-01-09 22:45:44,501 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 17:46:22] 2026-01-09 22:45:44,501 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 17:46:22] 2026-01-09 22:45:44,518 | INFO     | fitting pss+swap vs Time
[2026-01-09 17:46:22] 2026-01-09 22:45:44,519 | INFO     | sum of square deviations: 11867566739.03849
[2026-01-09 17:46:22] 2026-01-09 22:45:44,533 | INFO     | sum of deviations: 137917652218.7775
[2026-01-09 17:46:22] 2026-01-09 22:45:44,533 | INFO     | mean x: 1767988432.0534124
[2026-01-09 17:46:22] 2026-01-09 22:45:44,533 | INFO     | mean y: 2501889.8456973294
[2026-01-09 17:46:22] 2026-01-09 22:45:44,534 | INFO     | intersect: -20543985782.025608
[2026-01-09 17:46:22] 2026-01-09 22:45:44,534 | INFO     | chi2: 4.252388572323914
[2026-01-09 17:46:22] 2026-01-09 22:45:44,534 | INFO     | sum of square deviations: 11347113884.129566
[2026-01-09 17:46:22] 2026-01-09 22:45:44,536 | INFO     | sum of deviations: 156943647759.66272
[2026-01-09 17:46:22] 2026-01-09 22:45:44,536 | INFO     | mean x: 1767988279.551205
[2026-01-09 17:46:22] 2026-01-09 22:45:44,537 | INFO     | mean y: 2507388.8433734938
[2026-01-09 17:46:22] 2026-01-09 22:45:44,537 | INFO     | intersect: -24450805816.832752
[2026-01-09 17:46:22] 2026-01-09 22:45:44,537 | INFO     | chi2: 3.571628532179492
[2026-01-09 17:46:22] 2026-01-09 22:45:44,544 | INFO     | current chi2=3.571628532179492 (change=16.00888603113684 %)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,544 | INFO     | right removable region: 331
[2026-01-09 17:46:22] 2026-01-09 22:45:44,545 | INFO     | sum of square deviations: 11347123584.02415
[2026-01-09 17:46:22] 2026-01-09 22:45:44,547 | INFO     | sum of deviations: 39888711894.542114
[2026-01-09 17:46:22] 2026-01-09 22:45:44,547 | INFO     | mean x: 1767988584.5542169
[2026-01-09 17:46:22] 2026-01-09 22:45:44,547 | INFO     | mean y: 2530573.7198795183
[2026-01-09 17:46:22] 2026-01-09 22:45:44,547 | INFO     | intersect: -6212505929.576247
[2026-01-09 17:46:22] 2026-01-09 22:45:44,548 | INFO     | chi2: 1.169438902602503
[2026-01-09 17:46:22] 2026-01-09 22:45:44,548 | INFO     | current chi2=1.169438902602503 (change=72.49924641850383 %)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,548 | INFO     | sum of square deviations: 10842143074.116259
[2026-01-09 17:46:22] 2026-01-09 22:45:44,550 | INFO     | sum of deviations: 12311667034.012245
[2026-01-09 17:46:22] 2026-01-09 22:45:44,550 | INFO     | mean x: 1767988737.051988
[2026-01-09 17:46:22] 2026-01-09 22:45:44,551 | INFO     | mean y: 2538881.0581039754
[2026-01-09 17:46:22] 2026-01-09 22:45:44,551 | INFO     | intersect: -2005079769.7631145
[2026-01-09 17:46:22] 2026-01-09 22:45:44,551 | INFO     | chi2: 0.929708903314628
[2026-01-09 17:46:22] 2026-01-09 22:45:44,551 | INFO     | current chi2=0.929708903314628 (change=20.49957451854671 %)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,551 | INFO     | left removable region: 20
[2026-01-09 17:46:22] 2026-01-09 22:45:44,551 | INFO     | sum of square deviations: 9327253818.456596
[2026-01-09 17:46:22] 2026-01-09 22:45:44,554 | INFO     | sum of deviations: 2660071418.88103
[2026-01-09 17:46:22] 2026-01-09 22:45:44,554 | INFO     | mean x: 1767988859.0418007
[2026-01-09 17:46:22] 2026-01-09 22:45:44,554 | INFO     | mean y: 2554894.8553054663
[2026-01-09 17:46:22] 2026-01-09 22:45:44,554 | INFO     | intersect: -501663894.98088545
[2026-01-09 17:46:22] 2026-01-09 22:45:44,554 | INFO     | chi2: 0.07305323963922214
[2026-01-09 17:46:22] 2026-01-09 22:45:44,554 | INFO     | current memory leak: 0.29 B/s (using 311 data points, chi2=0.07)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,555 | INFO     | could have reported an average CPU frequency of 3291 MHz (15 samples)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,555 | INFO     | ..............................
[2026-01-09 17:46:22] 2026-01-09 22:45:44,555 | INFO     | . Timing measurements:
[2026-01-09 17:46:22] 2026-01-09 22:45:44,555 | INFO     | . get job = 0 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,555 | INFO     | . initial setup = 3 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,555 | INFO     | . payload setup = 16 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,556 | INFO     | . stage-in = 0 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,556 | INFO     | . payload execution = 20543 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,556 | INFO     | . stage-out = 3 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,556 | INFO     | . log creation = 0 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,556 | INFO     | ..............................
[2026-01-09 17:46:22] 2026-01-09 22:45:44,688 | INFO     | 
[2026-01-09 17:46:22] 2026-01-09 22:45:44,688 | INFO     | job summary report
[2026-01-09 17:46:22] 2026-01-09 22:45:44,688 | INFO     | --------------------------------------------------
[2026-01-09 17:46:22] 2026-01-09 22:45:44,688 | INFO     | PanDA job id: 6963146919
[2026-01-09 17:46:22] 2026-01-09 22:45:44,688 | INFO     | task id: 47898826
[2026-01-09 17:46:22] 2026-01-09 22:45:44,688 | INFO     | errors: (none)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | pilot state: finished 
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | transexitcode: 0
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | exeerrorcode: 0
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | exeerrordiag: 
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | exitcode: 0
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | exitmsg: OK
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | cpuconsumptiontime: 45689 s
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | nevents: 400
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | neventsw: 0
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | pid: 228821
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | pgrp: 228821
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | corecount: 9
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | event service: False
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | sizes: {0: 2283970, 1: 2283970, 10: 2284260, 11: 2284288, 20564: 2318070, 20565: 2318069, 20569: 2327251, 20570: 2327307, 20586: 2327501}
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | --------------------------------------------------
[2026-01-09 17:46:22] 2026-01-09 22:45:44,689 | INFO     | 
[2026-01-09 17:46:22] 2026-01-09 22:45:44,690 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 17:46:22] 2026-01-09 22:45:44,765 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 17:46:22] 2026-01-09 22:45:44,767 | INFO     | job 6963146919 has completed (purged errors)
[2026-01-09 17:46:22] 2026-01-09 22:45:44,768 | INFO     | overall cleanup function is called
[2026-01-09 17:46:22] 2026-01-09 22:45:45,799 | INFO     | --- collectZombieJob: --- 10, [228821]
[2026-01-09 17:46:22] 2026-01-09 22:45:45,799 | INFO     | zombie collector waiting for pid 228821
[2026-01-09 17:46:22] 2026-01-09 22:45:45,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 17:46:22] 2026-01-09 22:45:45,800 | INFO     | collected zombie processes
[2026-01-09 17:46:22] 2026-01-09 22:45:45,800 | INFO     | will attempt to kill all subprocesses of pid=228821
[2026-01-09 17:46:22] 2026-01-09 22:45:46,948 | INFO     | process IDs to be killed: [228821] (in reverse order)
[2026-01-09 17:46:22] 2026-01-09 22:45:47,358 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 17:46:22] 2026-01-09 22:45:47,358 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 17:46:22] 2026-01-09 22:45:47,417 | INFO     | did not find any defunct processes belonging to 228821
[2026-01-09 17:46:22] 2026-01-09 22:45:47,468 | INFO     | did not find any defunct processes belonging to 228821
[2026-01-09 17:46:22] 2026-01-09 22:45:47,469 | INFO     | ready for new job
[2026-01-09 17:46:22] 2026-01-09 22:45:47,469 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 17:46:22] 2026-01-09 22:45:47,475 | INFO     | ***************************************
[2026-01-09 17:46:22] 2026-01-09 22:45:47,475 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 17:46:22] 2026-01-09 22:45:47,475 | INFO     | ***************************************
[2026-01-09 17:46:22] 2026-01-09 22:45:47,475 | INFO     | 
[2026-01-09 17:46:22] 2026-01-09 22:45:47,486 | INFO     | architecture information:
[2026-01-09 17:46:22] 2026-01-09 22:45:47,494 | INFO     | executing command: cat /etc/os-release
[2026-01-09 17:46:22] 2026-01-09 22:45:47,556 | INFO     | cat /etc/os-release:
[2026-01-09 17:46:22] NAME="CentOS Linux"
[2026-01-09 17:46:22] VERSION="7 (Core)"
[2026-01-09 17:46:22] ID="centos"
[2026-01-09 17:46:22] ID_LIKE="rhel fedora"
[2026-01-09 17:46:22] VERSION_ID="7"
[2026-01-09 17:46:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 17:46:22] ANSI_COLOR="0;31"
[2026-01-09 17:46:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 17:46:22] HOME_URL="https://www.centos.org/"
[2026-01-09 17:46:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 17:46:22] 
[2026-01-09 17:46:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 17:46:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 17:46:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 17:46:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 17:46:22] 
[2026-01-09 17:46:22] 2026-01-09 22:45:47,556 | INFO     | ***************************************
[2026-01-09 17:46:22] 2026-01-09 22:45:48,060 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 17:46:22] 2026-01-09 22:45:48,173 | INFO     | sufficient remaining disk space (72619130880 B)
[2026-01-09 17:46:22] 2026-01-09 22:45:48,174 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 17:46:22] 2026-01-09 22:45:48,174 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 17:46:22] 2026-01-09 22:45:48,174 | INFO     | update_server=False
[2026-01-09 17:46:22] 2026-01-09 22:45:48,174 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 17:46:22] 2026-01-09 22:45:48,174 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:46:22] 2026-01-09 22:45:48,174 | INFO     | aborting loop
[2026-01-09 17:46:22] 2026-01-09 22:45:48,393 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 17:46:22] 2026-01-09 22:45:48,540 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:46:22] 2026-01-09 22:45:48,577 | INFO     | all data control threads have been joined
[2026-01-09 17:46:22] 2026-01-09 22:45:49,179 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:49,180 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:49,191 | INFO     | all payload control threads have been joined
[2026-01-09 17:46:22] 2026-01-09 22:45:49,271 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:49,316 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:49,582 | INFO     | [data] control thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:49,700 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:46:22] 2026-01-09 22:45:49,702 | INFO     | all job control threads have been joined
[2026-01-09 17:46:22] 2026-01-09 22:45:50,164 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,196 | INFO     | [payload] control thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,203 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,277 | INFO     | [job] validate thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,295 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,334 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,401 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,706 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,710 | INFO     | [job] control thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:50,721 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:51,495 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:46:22] 2026-01-09 22:45:52,550 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:46:22] 2026-01-09 22:45:53,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140532897437504)>', '<ExcThread(monitor, started 140532269446912)>']
[2026-01-09 17:46:22] 2026-01-09 22:45:58,241 | INFO     | all workflow threads have been joined
[2026-01-09 17:46:22] 2026-01-09 22:45:58,241 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:46:22] 2026-01-09 22:45:58,242 | INFO     | traces error code: 0
[2026-01-09 17:46:22] 2026-01-09 22:45:58,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:46:22] 2026-01-09 22:46:20,484 | INFO     | PID=220545 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 17:46:22] 2026-01-09 22:46:20,492 | INFO     | .. there are 25 such processes running
[2026-01-09 17:46:22] 2026-01-09 22:46:20,493 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:46:22] 2026-01-09 22:46:20,493 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:46:22] 2026-01-09 22:46:20,493 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:46:22] 2026-01-09 22:46:20,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:46:22] 2026-01-09 22:46:20,493 | INFO     | [monitor] control thread has ended
[2026-01-09 17:46:22] 2026-01-09 22:46:21,428 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:46:22] 2026-01-09 22:46:21,444 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:46:22] 2026-01-09 22:46:21,467 [wrapper] pilotpid: 220545
[2026-01-09 17:46:22] 2026-01-09 22:46:21,494 [wrapper] Pilot exit status: 0
[2026-01-09 17:46:22] 2026-01-09 22:46:21,595 [wrapper] pandaids: 6963146919
[2026-01-09 17:46:22] 2026-01-09 22:46:21,870 [wrapper] cleanup supervisor_pilot 1921169 220546
[2026-01-09 17:46:22] 2026-01-09 22:46:21,915 [wrapper] Test setup, not cleaning
[2026-01-09 17:46:22] 2026-01-09 22:46:21,975 [wrapper] apfmon messages muted
[2026-01-09 17:46:22] 2026-01-09 22:46:22,029 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:46:22] 2026-01-09 22:46:22,065 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:46:22]  *** Error codes and diagnostics ***
[2026-01-09 17:46:22]     "exeErrorCode": 0,
[2026-01-09 17:46:22]     "exeErrorDiag": "",
[2026-01-09 17:46:22]     "pilotErrorCode": 0,
[2026-01-09 17:46:22]     "pilotErrorDiag": "",
[2026-01-09 17:46:22]  *** Listing of results directory ***
[2026-01-09 17:46:22] total 449944
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 17:46:22] -rwx------. 1 boincer umatlas     36322 Jan  8 10:03 runpilot2-wrapper.sh
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 10:04 queuedata.json
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas       100 Jan  9 12:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:46:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 12:01 run_atlas
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas       105 Jan  9 12:01 job.xml
[2026-01-09 17:46:22] -rw-r--r--. 2 boincer umatlas 224912059 Jan  9 12:01 EVNT.47898824._001073.pool.root.1
[2026-01-09 17:46:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:01 start_atlas.sh
[2026-01-09 17:46:22] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 12:01 shared
[2026-01-09 17:46:22] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 12:01 input.tar.gz
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas         0 Jan  9 12:01 boinc_lockfile
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 12:01 pandaJob.out
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas        57 Jan  9 12:01 setup.sh.local
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas    989356 Jan  9 12:02 agis_schedconf.cvmfs.json
[2026-01-09 17:46:22] drwx------. 5 boincer umatlas      4096 Jan  9 12:02 pilot3
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas      6944 Jan  9 17:37 init_data.xml
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas 225316929 Jan  9 17:43 HITS.47898826._027222.pool.root.1
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas       531 Jan  9 17:43 boinc_task_state.xml
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas      1044 Jan  9 17:45 memory_monitor_summary.json
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas   1516240 Jan  9 17:45 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas    579843 Jan  9 17:45 log.47898826._027222.job.log.tgz.1
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas      7793 Jan  9 17:45 heartbeat.json
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas        95 Jan  9 17:46 pilot_heartbeat.json
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas       822 Jan  9 17:46 pilotlog.txt
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas   2717958 Jan  9 17:46 log.47898826._027222.job.log.1
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas        28 Jan  9 17:46 wrapper_checkpoint.txt
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 17:46 boinc_mmap_file
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas       357 Jan  9 17:46 output.list
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas       620 Jan  9 17:46 runtime_log
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas   3317760 Jan  9 17:46 result.tar.gz
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 17:46 runtime_log.err
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas       658 Jan  9 17:46 oANKDmSj6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8VfKDmi0RBsm.diag
[2026-01-09 17:46:22] -rw-r--r--. 1 boincer umatlas     21419 Jan  9 17:46 stderr.txt
[2026-01-09 17:46:22] HITS file was successfully produced:
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas 225316929 Jan  9 17:43 shared/HITS.pool.root.1
[2026-01-09 17:46:22]  *** Contents of shared directory: ***
[2026-01-09 17:46:22] total 443528
[2026-01-09 17:46:22] -rw-r--r--. 2 boincer umatlas 224912059 Jan  9 12:01 ATLAS.root_0
[2026-01-09 17:46:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 12:01 start_atlas.sh
[2026-01-09 17:46:22] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 12:01 input.tar.gz
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas 225316929 Jan  9 17:43 HITS.pool.root.1
[2026-01-09 17:46:22] -rw-------. 1 boincer umatlas   3317760 Jan  9 17:46 result.tar.gz
17:46:44 (215526): run_atlas exited; CPU time 46516.497733
17:46:44 (215526): called boinc_finish(0)

</stderr_txt>
]]>

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