Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:21:39 (29309): wrapper (7.7.26015): starting
20:21:39 (29309): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 20:21:39] Arguments: --nthreads 8
[2026-01-09 20:21:39] Threads: 8
[2026-01-09 20:21:39] Checking for CVMFS
[2026-01-09 20:21:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:21:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:21:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:21:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:21:39] 2.11.2.0 32209 35811 121312 154955 0 57 20308270 25165825 0 130560 0 17391458 99.828 9870127 4072 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 20:21:39] CVMFS is ok
[2026-01-09 20:21:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:21:39] Checking for apptainer binary...
[2026-01-09 20:21:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:21:39] Running /usr/bin/apptainer --version
[2026-01-09 20:21:39] apptainer version 1.3.2-1.el7
[2026-01-09 20:21:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:21:41] cg-vwn500.simple-grid.lan
[2026-01-09 20:21:41] apptainer works
[2026-01-09 20:21:41] Set ATHENA_PROC_NUMBER=8
[2026-01-09 20:21:41] Set ATHENA_CORE_NUMBER=8
[2026-01-09 20:21:41] Starting ATLAS job with PandaID=6963165879
[2026-01-09 20:21:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:55:20]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:55:20] 2026-01-09 21:54:34,038 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 22:55:20] 2026-01-09 21:54:34,039 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 22:55:20] 2026-01-09 21:54:34,040 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6963165879/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,041 | INFO     | extracted standard info from prmon json
[2026-01-09 22:55:20] 2026-01-09 21:54:34,041 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:55:20] 2026-01-09 21:54:34,041 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:55:20] 2026-01-09 21:54:34,042 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:55:20] 2026-01-09 21:54:34,042 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:55:20] 2026-01-09 21:54:34,045 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:55:20] 2026-01-09 21:54:34,046 | INFO     | sum of square deviations: 1046484737.5
[2026-01-09 22:55:20] 2026-01-09 21:54:34,046 | INFO     | sum of deviations: -16782423456.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,047 | INFO     | mean x: 1767991094.5
[2026-01-09 22:55:20] 2026-01-09 21:54:34,047 | INFO     | mean y: 2539785.16
[2026-01-09 22:55:20] 2026-01-09 21:54:34,047 | INFO     | intersect: 28355724644.041817
[2026-01-09 22:55:20] 2026-01-09 21:54:34,047 | INFO     | chi2: 2.4813148993283973
[2026-01-09 22:55:20] 2026-01-09 21:54:34,047 | INFO     | sum of square deviations: 945282840.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,048 | INFO     | sum of deviations: -5797558096.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,049 | INFO     | mean x: 1767990942.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,049 | INFO     | mean y: 2555935.9931034483
[2026-01-09 22:55:20] 2026-01-09 21:54:34,049 | INFO     | intersect: 10845903308.560204
[2026-01-09 22:55:20] 2026-01-09 21:54:34,049 | INFO     | chi2: 1.7223377670172588
[2026-01-09 22:55:20] 2026-01-09 21:54:34,049 | INFO     | current chi2=1.7223377670172588 (change=30.58769898639493 %)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,049 | INFO     | sum of square deviations: 850825255.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,050 | INFO     | sum of deviations: -4899969112.499999
[2026-01-09 22:55:20] 2026-01-09 21:54:34,050 | INFO     | mean x: 1767990789.5
[2026-01-09 22:55:20] 2026-01-09 21:54:34,051 | INFO     | mean y: 2557385.7071428574
[2026-01-09 22:55:20] 2026-01-09 21:54:34,051 | INFO     | intersect: 10184554463.04412
[2026-01-09 22:55:20] 2026-01-09 21:54:34,051 | INFO     | chi2: 1.7234158531899602
[2026-01-09 22:55:20] 2026-01-09 21:54:34,051 | INFO     | current chi2=1.7234158531899602 (change=-0.0625943524752615 %)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,051 | INFO     | right removable region: 139
[2026-01-09 22:55:20] 2026-01-09 21:54:34,052 | INFO     | sum of square deviations: 945282840.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,052 | INFO     | sum of deviations: -39929969138.00001
[2026-01-09 22:55:20] 2026-01-09 21:54:34,053 | INFO     | mean x: 1767991247.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,053 | INFO     | mean y: 2574132.296551724
[2026-01-09 22:55:20] 2026-01-09 21:54:34,053 | INFO     | intersect: 74684809905.20464
[2026-01-09 22:55:20] 2026-01-09 21:54:34,053 | INFO     | chi2: 0.9708563425820931
[2026-01-09 22:55:20] 2026-01-09 21:54:34,053 | INFO     | current chi2=0.9708563425820931 (change=60.87331185393402 %)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,053 | INFO     | sum of square deviations: 850825255.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,054 | INFO     | sum of deviations: -42139176156.5
[2026-01-09 22:55:20] 2026-01-09 21:54:34,055 | INFO     | mean x: 1767991399.5
[2026-01-09 22:55:20] 2026-01-09 21:54:34,055 | INFO     | mean y: 2577646.8928571427
[2026-01-09 22:55:20] 2026-01-09 21:54:34,055 | INFO     | intersect: 87566622777.06175
[2026-01-09 22:55:20] 2026-01-09 21:54:34,055 | INFO     | chi2: 0.9168433775301777
[2026-01-09 22:55:20] 2026-01-09 21:54:34,055 | INFO     | current chi2=0.9168433775301777 (change=5.5634353593717325 %)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,055 | INFO     | left removable region: 20
[2026-01-09 22:55:20] 2026-01-09 21:54:34,056 | INFO     | sum of square deviations: 522502820.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,056 | INFO     | sum of deviations: -22838098904.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,056 | INFO     | mean x: 1767991369.0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,057 | INFO     | mean y: 2586805.092436975
[2026-01-09 22:55:20] 2026-01-09 21:54:34,057 | INFO     | intersect: 77279799867.1011
[2026-01-09 22:55:20] 2026-01-09 21:54:34,057 | INFO     | chi2: 0.11303989731680776
[2026-01-09 22:55:20] 2026-01-09 21:54:34,057 | INFO     | current memory leak: -43.71 B/s (using 119 data points, chi2=0.11)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,058 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,058 | INFO     | ..............................
[2026-01-09 22:55:20] 2026-01-09 21:54:34,058 | INFO     | . Timing measurements:
[2026-01-09 22:55:20] 2026-01-09 21:54:34,058 | INFO     | . get job = 0 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,058 | INFO     | . initial setup = 2 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,058 | INFO     | . payload setup = 7 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,058 | INFO     | . stage-in = 0 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,059 | INFO     | . payload execution = 9117 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,059 | INFO     | . stage-out = 0 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,059 | INFO     | . log creation = 0 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,059 | INFO     | ..............................
[2026-01-09 22:55:20] 2026-01-09 21:54:34,169 | INFO     | 
[2026-01-09 22:55:20] 2026-01-09 21:54:34,169 | INFO     | job summary report
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | --------------------------------------------------
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | PanDA job id: 6963165879
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | task id: 47898826
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | errors: (none)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | pilot state: finished 
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | transexitcode: 0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | exeerrorcode: 0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | exeerrordiag: 
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | exitcode: 0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,170 | INFO     | exitmsg: OK
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | cpuconsumptiontime: 67454 s
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | nevents: 400
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | neventsw: 0
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | pid: 7090
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | pgrp: 7090
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | corecount: 8
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | event service: False
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 9128: 2312167, 9130: 2321165, 9132: 2321221, 9139: 2321543}
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | --------------------------------------------------
[2026-01-09 22:55:20] 2026-01-09 21:54:34,171 | INFO     | 
[2026-01-09 22:55:20] 2026-01-09 21:54:34,172 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-09 22:55:20] 2026-01-09 21:54:34,218 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,219 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,219 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,219 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,219 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,221 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,221 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,221 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:55:20] 2026-01-09 21:54:34,221 | INFO     | job 6963165879 has completed (purged errors)
[2026-01-09 22:55:20] 2026-01-09 21:54:34,221 | INFO     | overall cleanup function is called
[2026-01-09 22:55:20] 2026-01-09 21:54:35,225 | INFO     | --- collectZombieJob: --- 10, [7090]
[2026-01-09 22:55:20] 2026-01-09 21:54:35,226 | INFO     | zombie collector waiting for pid 7090
[2026-01-09 22:55:20] 2026-01-09 21:54:35,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:55:20] 2026-01-09 21:54:35,226 | INFO     | collected zombie processes
[2026-01-09 22:55:20] 2026-01-09 21:54:35,226 | INFO     | will attempt to kill all subprocesses of pid=7090
[2026-01-09 22:55:20] 2026-01-09 21:54:35,290 | INFO     | process IDs to be killed: [7090] (in reverse order)
[2026-01-09 22:55:20] 2026-01-09 21:54:35,336 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:55:20] 2026-01-09 21:54:35,337 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:55:20] 2026-01-09 21:54:35,339 | INFO     | did not find any defunct processes belonging to 7090
[2026-01-09 22:55:20] 2026-01-09 21:54:35,340 | INFO     | did not find any defunct processes belonging to 7090
[2026-01-09 22:55:20] 2026-01-09 21:54:35,341 | INFO     | ready for new job
[2026-01-09 22:55:20] 2026-01-09 21:54:35,341 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:55:20] 2026-01-09 21:54:35,342 | INFO     | ***************************************
[2026-01-09 22:55:20] 2026-01-09 21:54:35,343 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:55:20] 2026-01-09 21:54:35,343 | INFO     | ***************************************
[2026-01-09 22:55:20] 2026-01-09 21:54:35,343 | INFO     | 
[2026-01-09 22:55:20] 2026-01-09 21:54:35,343 | INFO     | pilot is running in a VM
[2026-01-09 22:55:20] 2026-01-09 21:54:35,343 | INFO     | architecture information:
[2026-01-09 22:55:20] 2026-01-09 21:54:35,344 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:55:20] 2026-01-09 21:54:35,368 | INFO     | cat /etc/os-release:
[2026-01-09 22:55:20] NAME="CentOS Linux"
[2026-01-09 22:55:20] VERSION="7 (Core)"
[2026-01-09 22:55:20] ID="centos"
[2026-01-09 22:55:20] ID_LIKE="rhel fedora"
[2026-01-09 22:55:20] VERSION_ID="7"
[2026-01-09 22:55:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:55:20] ANSI_COLOR="0;31"
[2026-01-09 22:55:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:55:20] HOME_URL="https://www.centos.org/"
[2026-01-09 22:55:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:55:20] 
[2026-01-09 22:55:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:55:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:55:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:55:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:55:20] 
[2026-01-09 22:55:20] 2026-01-09 21:54:35,369 | INFO     | ***************************************
[2026-01-09 22:55:20] 2026-01-09 21:54:35,870 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-09 22:55:20] 2026-01-09 21:54:35,901 | INFO     | sufficient remaining disk space (497895342080 B)
[2026-01-09 22:55:20] 2026-01-09 21:54:35,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:55:20] 2026-01-09 21:54:35,902 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:55:20] 2026-01-09 21:54:35,902 | INFO     | update_server=False
[2026-01-09 22:55:20] 2026-01-09 21:54:35,902 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:55:20] 2026-01-09 21:54:35,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:55:20] 2026-01-09 21:54:35,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:55:20] 2026-01-09 21:54:36,487 | INFO     | all data control threads have been joined
[2026-01-09 22:55:20] 2026-01-09 21:54:36,634 | INFO     | all payload control threads have been joined
[2026-01-09 22:55:20] 2026-01-09 21:54:36,669 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:55:20] 2026-01-09 21:54:36,669 | INFO     | aborting loop
[2026-01-09 22:55:20] 2026-01-09 21:54:36,908 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:36,909 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:36,926 | INFO     | [job] validate thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:36,975 | INFO     | all job control threads have been joined
[2026-01-09 22:55:20] 2026-01-09 21:54:37,023 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:37,421 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:37,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:55:20] 2026-01-09 21:54:37,493 | INFO     | [data] control thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:37,638 | INFO     | [payload] control thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:37,674 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:37,909 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:37,981 | INFO     | [job] control thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:38,029 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:38,077 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:38,138 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:38,445 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:41,429 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:54:46,289 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:55:20] 2026-01-09 21:54:47,294 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:55:20] 2026-01-09 21:55:06,489 | INFO     | PID=634 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-09 22:55:20] 2026-01-09 21:55:06,490 | INFO     | .. there are 2 such processes running
[2026-01-09 22:55:20] 2026-01-09 21:55:06,490 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:55:20] 2026-01-09 21:55:06,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:55:20] 2026-01-09 21:55:06,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:55:20] 2026-01-09 21:55:12,854 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:55:20] 2026-01-09 21:55:14,466 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139655553120064)>', '<ExcThread(monitor, started 139654661654272)>']
[2026-01-09 22:55:20] 2026-01-09 21:55:14,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:55:20] 2026-01-09 21:55:14,538 | INFO     | [monitor] control thread has ended
[2026-01-09 22:55:20] 2026-01-09 21:55:19,492 | INFO     | all workflow threads have been joined
[2026-01-09 22:55:20] 2026-01-09 21:55:19,493 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:55:20] 2026-01-09 21:55:19,493 | INFO     | traces error code: 0
[2026-01-09 22:55:20] 2026-01-09 21:55:19,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:55:20] 2026-01-09 21:55:19,650 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:55:20] 2026-01-09 21:55:19,664 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:55:20] 2026-01-09 21:55:19,678 [wrapper] pilotpid: 634
[2026-01-09 22:55:20] 2026-01-09 21:55:19,681 [wrapper] Pilot exit status: 0
[2026-01-09 22:55:20] 2026-01-09 21:55:19,695 [wrapper] pandaids: 6963165879
[2026-01-09 22:55:20] 2026-01-09 21:55:19,724 [wrapper] cleanup supervisor_pilot  6808 635
[2026-01-09 22:55:20] 2026-01-09 21:55:19,737 [wrapper] Test setup, not cleaning
[2026-01-09 22:55:20] 2026-01-09 21:55:19,740 [wrapper] apfmon messages muted
[2026-01-09 22:55:20] 2026-01-09 21:55:19,742 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:55:20] 2026-01-09 21:55:19,745 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:55:20]  *** Error codes and diagnostics ***
[2026-01-09 22:55:20]     "exeErrorCode": 0,
[2026-01-09 22:55:20]     "exeErrorDiag": "",
[2026-01-09 22:55:20]     "pilotErrorCode": 0,
[2026-01-09 22:55:20]     "pilotErrorDiag": "",
[2026-01-09 22:55:20]  *** Listing of results directory ***
[2026-01-09 22:55:20] total 435064
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 22:55:20] -rwx------. 1 boinc boinc     36322 Jan  9 01:59 runpilot2-wrapper.sh
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:02 queuedata.json
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc       100 Jan  9 20:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:55:20] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 20:21 run_atlas
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc       105 Jan  9 20:21 job.xml
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc      6391 Jan  9 20:21 init_data.xml
[2026-01-09 22:55:20] -rw-r--r--. 2 boinc boinc 221849911 Jan  9 20:21 EVNT.47898824._001355.pool.root.1
[2026-01-09 22:55:20] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:21 start_atlas.sh
[2026-01-09 22:55:20] drwxrwx--x. 2 boinc boinc        68 Jan  9 20:21 shared
[2026-01-09 22:55:20] -rw-r--r--. 2 boinc boinc    592397 Jan  9 20:21 input.tar.gz
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc         0 Jan  9 20:21 boinc_lockfile
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc      2520 Jan  9 20:21 pandaJob.out
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc    989364 Jan  9 20:21 agis_schedconf.cvmfs.json
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc   1516240 Jan  9 20:21 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:55:20] drwx------. 5 boinc boinc      4096 Jan  9 20:21 pilot3
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc 216496106 Jan  9 22:53 HITS.47898826._034992.pool.root.1
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc       530 Jan  9 22:54 boinc_task_state.xml
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc      1027 Jan  9 22:54 memory_monitor_summary.json
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc    392350 Jan  9 22:54 log.47898826._034992.job.log.tgz.1
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc      7775 Jan  9 22:54 heartbeat.json
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc      8192 Jan  9 22:54 boinc_mmap_file
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc        27 Jan  9 22:54 wrapper_checkpoint.txt
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc        95 Jan  9 22:55 pilot_heartbeat.json
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc      4954 Jan  9 22:55 pilotlog.txt
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc   1239087 Jan  9 22:55 log.47898826._034992.job.log.1
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc       357 Jan  9 22:55 output.list
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc       620 Jan  9 22:55 runtime_log
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc   1648640 Jan  9 22:55 result.tar.gz
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc      8816 Jan  9 22:55 runtime_log.err
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc       652 Jan  9 22:55 RgrMDmM1Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUzlKDm7Hzson.diag
[2026-01-09 22:55:20] -rw-r--r--. 1 boinc boinc     20651 Jan  9 22:55 stderr.txt
[2026-01-09 22:55:20] HITS file was successfully produced:
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc 216496106 Jan  9 22:53 shared/HITS.pool.root.1
[2026-01-09 22:55:20]  *** Contents of shared directory: ***
[2026-01-09 22:55:20] total 430284
[2026-01-09 22:55:20] -rw-r--r--. 2 boinc boinc 221849911 Jan  9 20:21 ATLAS.root_0
[2026-01-09 22:55:20] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:21 start_atlas.sh
[2026-01-09 22:55:20] -rw-r--r--. 2 boinc boinc    592397 Jan  9 20:21 input.tar.gz
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc 216496106 Jan  9 22:53 HITS.pool.root.1
[2026-01-09 22:55:20] -rw-------. 1 boinc boinc   1648640 Jan  9 22:55 result.tar.gz
22:55:21 (29309): run_atlas exited; CPU time 67511.710413
22:55:21 (29309): called boinc_finish(0)

</stderr_txt>
]]>

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