Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:46:30 (11689): wrapper (7.7.26015): starting
11:46:30 (11689): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 11:46:30] Arguments: --nthreads 8
[2026-01-09 11:46:30] Threads: 8
[2026-01-09 11:46:30] Checking for CVMFS
[2026-01-09 11:46:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:46:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:46:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:46:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:46:30] 2.11.2.0 2933 10049 75176 154950 3 57 13420030 20275201 1 130560 0 1618582 99.045 1363702 43820 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 11:46:30] CVMFS is ok
[2026-01-09 11:46:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:46:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:46:30] Further information can be found at the LHC@home message board.
[2026-01-09 11:46:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:46:30] Checking for apptainer binary...
[2026-01-09 11:46:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:46:30] Running /usr/bin/apptainer --version
[2026-01-09 11:46:30] apptainer version 1.3.2-1.el7
[2026-01-09 11:46:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:46:32] c-115-2.aglt2.org
[2026-01-09 11:46:32] apptainer works
[2026-01-09 11:46:32] Set ATHENA_PROC_NUMBER=8
[2026-01-09 11:46:32] Set ATHENA_CORE_NUMBER=8
[2026-01-09 11:46:32] Starting ATLAS job with PandaID=6963165579
[2026-01-09 11:46:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:22:19]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:22:19] 2026-01-09 19:21:53,538 | INFO     | executing command: lscpu
[2026-01-09 14:22:19] 2026-01-09 19:21:53,566 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 14:22:19] 2026-01-09 19:21:54,852 | INFO     | monitor loop #687: job 0:6963165579 is in state 'finished'
[2026-01-09 14:22:19] 2026-01-09 19:21:54,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:22:19] 2026-01-09 19:21:55,257 | INFO     | time since job start (9306s) is within the limit (349056.0s)
[2026-01-09 14:22:19] 2026-01-09 19:21:57,263 | INFO     | time since job start (9308s) is within the limit (349056.0s)
[2026-01-09 14:22:19] 2026-01-09 19:21:57,356 | INFO     | monitor loop #688: job 0:6963165579 is in state 'finished'
[2026-01-09 14:22:19] 2026-01-09 19:21:57,356 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:22:19] 2026-01-09 19:21:58,976 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 14:22:19] 2026-01-09 19:21:58,979 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2026-01-09 14:22:19] 2026-01-09 19:21:58,980 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963165579/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:22:19] 2026-01-09 19:21:58,981 | INFO     | extracted standard info from prmon json
[2026-01-09 14:22:19] 2026-01-09 19:21:58,981 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:22:19] 2026-01-09 19:21:58,981 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:22:19] 2026-01-09 19:21:58,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:22:19] 2026-01-09 19:21:58,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:22:19] 2026-01-09 19:21:58,984 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:22:19] 2026-01-09 19:21:58,985 | INFO     | sum of square deviations: 1088905998.0
[2026-01-09 14:22:19] 2026-01-09 19:21:58,985 | INFO     | sum of deviations: 2658293959.5000052
[2026-01-09 14:22:19] 2026-01-09 19:21:58,986 | INFO     | mean x: 1767981845.5
[2026-01-09 14:22:19] 2026-01-09 19:21:58,986 | INFO     | mean y: 2540724.861842105
[2026-01-09 14:22:19] 2026-01-09 19:21:58,986 | INFO     | intersect: -4313548514.274042
[2026-01-09 14:22:19] 2026-01-09 19:21:58,986 | INFO     | chi2: 1.532894282660718
[2026-01-09 14:22:19] 2026-01-09 19:21:58,986 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 14:22:19] 2026-01-09 19:21:58,987 | INFO     | sum of deviations: 2682263573.9999995
[2026-01-09 14:22:19] 2026-01-09 19:21:58,987 | INFO     | mean x: 1767981693.0
[2026-01-09 14:22:19] 2026-01-09 19:21:58,987 | INFO     | mean y: 2540760.0136054424
[2026-01-09 14:22:19] 2026-01-09 19:21:58,988 | INFO     | intersect: -4812155401.930247
[2026-01-09 14:22:19] 2026-01-09 19:21:58,988 | INFO     | chi2: 1.5337169250028517
[2026-01-09 14:22:19] 2026-01-09 19:21:58,988 | INFO     | current chi2=1.5337169250028517 (change=-0.05366595409997264 %)
[2026-01-09 14:22:19] 2026-01-09 19:21:58,988 | INFO     | right removable region: 146
[2026-01-09 14:22:19] 2026-01-09 19:21:58,988 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 14:22:19] 2026-01-09 19:21:58,989 | INFO     | sum of deviations: -19183761472.99999
[2026-01-09 14:22:19] 2026-01-09 19:21:58,989 | INFO     | mean x: 1767981998.0
[2026-01-09 14:22:19] 2026-01-09 19:21:58,989 | INFO     | mean y: 2572254.911564626
[2026-01-09 14:22:19] 2026-01-09 19:21:58,989 | INFO     | intersect: 34437666391.44935
[2026-01-09 14:22:19] 2026-01-09 19:21:58,990 | INFO     | chi2: 0.146069940800621
[2026-01-09 14:22:19] 2026-01-09 19:21:58,990 | INFO     | current chi2=0.146069940800621 (change=90.47097099565924 %)
[2026-01-09 14:22:19] 2026-01-09 19:21:58,990 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 14:22:19] 2026-01-09 19:21:58,991 | INFO     | sum of deviations: -18346197740.000015
[2026-01-09 14:22:19] 2026-01-09 19:21:58,991 | INFO     | mean x: 1767982150.5
[2026-01-09 14:22:19] 2026-01-09 19:21:58,991 | INFO     | mean y: 2570849.591549296
[2026-01-09 14:22:19] 2026-01-09 19:21:58,991 | INFO     | intersect: 36536974917.43105
[2026-01-09 14:22:19] 2026-01-09 19:21:58,991 | INFO     | chi2: 0.1293920019205993
[2026-01-09 14:22:19] 2026-01-09 19:21:58,991 | INFO     | current chi2=0.1293920019205993 (change=11.417776161617226 %)
[2026-01-09 14:22:19] 2026-01-09 19:21:58,991 | INFO     | left removable region: 20
[2026-01-09 14:22:19] 2026-01-09 19:21:58,992 | INFO     | sum of square deviations: 620244187.5
[2026-01-09 14:22:19] 2026-01-09 19:21:58,992 | INFO     | sum of deviations: -8919340730.5
[2026-01-09 14:22:19] 2026-01-09 19:21:58,992 | INFO     | mean x: 1767982272.5
[2026-01-09 14:22:19] 2026-01-09 19:21:58,992 | INFO     | mean y: 2555705.103174603
[2026-01-09 14:22:19] 2026-01-09 19:21:58,993 | INFO     | intersect: 25426794435.129486
[2026-01-09 14:22:19] 2026-01-09 19:21:58,993 | INFO     | chi2: 0.09855408199759656
[2026-01-09 14:22:19] 2026-01-09 19:21:58,993 | INFO     | current memory leak: -14.38 B/s (using 126 data points, chi2=0.10)
[2026-01-09 14:22:19] 2026-01-09 19:21:58,993 | INFO     | could have reported an average CPU frequency of 2110 MHz (9 samples)
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | ..............................
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . Timing measurements:
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . get job = 0 s
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . initial setup = 2 s
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . payload setup = 8 s
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . stage-in = 0 s
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . payload execution = 9270 s
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . stage-out = 0 s
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | . log creation = 0 s
[2026-01-09 14:22:19] 2026-01-09 19:21:58,994 | INFO     | ..............................
[2026-01-09 14:22:19] 2026-01-09 19:21:59,268 | INFO     | time since job start (9310s) is within the limit (349056.0s)
[2026-01-09 14:22:19] 2026-01-09 19:21:59,403 | INFO     | 
[2026-01-09 14:22:19] 2026-01-09 19:21:59,404 | INFO     | job summary report
[2026-01-09 14:22:19] 2026-01-09 19:21:59,404 | INFO     | --------------------------------------------------
[2026-01-09 14:22:19] 2026-01-09 19:21:59,404 | INFO     | PanDA job id: 6963165579
[2026-01-09 14:22:19] 2026-01-09 19:21:59,404 | INFO     | task id: 47898826
[2026-01-09 14:22:19] 2026-01-09 19:21:59,405 | INFO     | errors: (none)
[2026-01-09 14:22:19] 2026-01-09 19:21:59,405 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:22:19] 2026-01-09 19:21:59,405 | INFO     | pilot state: finished 
[2026-01-09 14:22:19] 2026-01-09 19:21:59,405 | INFO     | transexitcode: 0
[2026-01-09 14:22:19] 2026-01-09 19:21:59,405 | INFO     | exeerrorcode: 0
[2026-01-09 14:22:19] 2026-01-09 19:21:59,405 | INFO     | exeerrordiag: 
[2026-01-09 14:22:19] 2026-01-09 19:21:59,406 | INFO     | exitcode: 0
[2026-01-09 14:22:19] 2026-01-09 19:21:59,406 | INFO     | exitmsg: OK
[2026-01-09 14:22:19] 2026-01-09 19:21:59,406 | INFO     | cpuconsumptiontime: 68994 s
[2026-01-09 14:22:19] 2026-01-09 19:21:59,406 | INFO     | nevents: 400
[2026-01-09 14:22:19] 2026-01-09 19:21:59,406 | INFO     | neventsw: 0
[2026-01-09 14:22:19] 2026-01-09 19:21:59,406 | INFO     | pid: 21980
[2026-01-09 14:22:19] 2026-01-09 19:21:59,407 | INFO     | pgrp: 21980
[2026-01-09 14:22:19] 2026-01-09 19:21:59,407 | INFO     | corecount: 8
[2026-01-09 14:22:19] 2026-01-09 19:21:59,407 | INFO     | event service: False
[2026-01-09 14:22:19] 2026-01-09 19:21:59,407 | INFO     | sizes: {0: 2283971, 1: 2283999, 6: 2284261, 11: 2284289, 9281: 2312597, 9283: 2321595, 9285: 2321807, 9292: 2322065}
[2026-01-09 14:22:19] 2026-01-09 19:21:59,407 | INFO     | --------------------------------------------------
[2026-01-09 14:22:19] 2026-01-09 19:21:59,407 | INFO     | 
[2026-01-09 14:22:19] 2026-01-09 19:21:59,407 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 14:22:19] 2026-01-09 19:21:59,435 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,436 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,436 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,436 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,436 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,437 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,437 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,437 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,437 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,437 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,438 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,438 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,438 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,438 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,438 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,439 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,439 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,439 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:22:19] 2026-01-09 19:21:59,439 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,439 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:22:19] 2026-01-09 19:21:59,440 | INFO     | job 6963165579 has completed (purged errors)
[2026-01-09 14:22:19] 2026-01-09 19:21:59,440 | INFO     | overall cleanup function is called
[2026-01-09 14:22:19] 2026-01-09 19:22:00,448 | INFO     | --- collectZombieJob: --- 10, [21980]
[2026-01-09 14:22:19] 2026-01-09 19:22:00,449 | INFO     | zombie collector waiting for pid 21980
[2026-01-09 14:22:19] 2026-01-09 19:22:00,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:22:19] 2026-01-09 19:22:00,449 | INFO     | collected zombie processes
[2026-01-09 14:22:19] 2026-01-09 19:22:00,449 | INFO     | will attempt to kill all subprocesses of pid=21980
[2026-01-09 14:22:19] 2026-01-09 19:22:00,536 | INFO     | process IDs to be killed: [21980] (in reverse order)
[2026-01-09 14:22:19] 2026-01-09 19:22:00,592 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:22:19] 2026-01-09 19:22:00,593 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:22:19] 2026-01-09 19:22:00,598 | INFO     | did not find any defunct processes belonging to 21980
[2026-01-09 14:22:19] 2026-01-09 19:22:00,601 | INFO     | did not find any defunct processes belonging to 21980
[2026-01-09 14:22:19] 2026-01-09 19:22:00,601 | INFO     | ready for new job
[2026-01-09 14:22:19] 2026-01-09 19:22:00,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:22:19] 2026-01-09 19:22:00,603 | INFO     | ***************************************
[2026-01-09 14:22:19] 2026-01-09 19:22:00,603 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:22:19] 2026-01-09 19:22:00,603 | INFO     | ***************************************
[2026-01-09 14:22:19] 2026-01-09 19:22:00,603 | INFO     | 
[2026-01-09 14:22:19] 2026-01-09 19:22:00,604 | INFO     | architecture information:
[2026-01-09 14:22:19] 2026-01-09 19:22:00,605 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:22:19] 2026-01-09 19:22:00,623 | INFO     | cat /etc/os-release:
[2026-01-09 14:22:19] NAME="CentOS Linux"
[2026-01-09 14:22:19] VERSION="7 (Core)"
[2026-01-09 14:22:19] ID="centos"
[2026-01-09 14:22:19] ID_LIKE="rhel fedora"
[2026-01-09 14:22:19] VERSION_ID="7"
[2026-01-09 14:22:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:22:19] ANSI_COLOR="0;31"
[2026-01-09 14:22:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:22:19] HOME_URL="https://www.centos.org/"
[2026-01-09 14:22:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:22:19] 
[2026-01-09 14:22:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:22:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:22:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:22:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:22:19] 
[2026-01-09 14:22:19] 2026-01-09 19:22:00,624 | INFO     | ***************************************
[2026-01-09 14:22:19] 2026-01-09 19:22:01,127 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 14:22:19] 2026-01-09 19:22:01,147 | INFO     | sufficient remaining disk space (18535677952 B)
[2026-01-09 14:22:19] 2026-01-09 19:22:01,148 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:22:19] 2026-01-09 19:22:01,148 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:22:19] 2026-01-09 19:22:01,149 | INFO     | update_server=False
[2026-01-09 14:22:19] 2026-01-09 19:22:01,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:22:19] 2026-01-09 19:22:01,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:22:19] 2026-01-09 19:22:01,150 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 14:22:19] 2026-01-09 19:22:01,150 | INFO     | aborting loop
[2026-01-09 14:22:19] 2026-01-09 19:22:01,150 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:22:19] 2026-01-09 19:22:01,151 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:22:19] 2026-01-09 19:22:01,151 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:22:19] 2026-01-09 19:22:01,199 | INFO     | all job control threads have been joined
[2026-01-09 14:22:19] 2026-01-09 19:22:01,236 | INFO     | all data control threads have been joined
[2026-01-09 14:22:19] 2026-01-09 19:22:02,154 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:02,156 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:02,204 | INFO     | [job] control thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:02,237 | INFO     | [data] control thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:02,301 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:02,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:22:19] 2026-01-09 19:22:02,398 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:02,427 | INFO     | all payload control threads have been joined
[2026-01-09 14:22:19] 2026-01-09 19:22:02,461 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:02,566 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:22:19] 2026-01-09 19:22:03,433 | INFO     | [payload] control thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:03,443 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:03,474 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:03,498 | INFO     | [job] validate thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:03,625 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:04,009 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:22:19] 2026-01-09 19:22:04,087 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:22:19] 2026-01-09 19:22:04,572 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:05,093 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:06,317 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:11,696 | INFO     | job.realtimelogging is not enabled
[2026-01-09 14:22:19] 2026-01-09 19:22:12,701 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:22:19] 2026-01-09 19:22:13,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139860382766912)>', '<ExcThread(monitor, started 139859486299904)>']
[2026-01-09 14:22:19] 2026-01-09 19:22:14,197 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:22:19] 2026-01-09 19:22:14,197 | INFO     | [monitor] control thread has ended
[2026-01-09 14:22:19] 2026-01-09 19:22:19,017 | INFO     | all workflow threads have been joined
[2026-01-09 14:22:19] 2026-01-09 19:22:19,017 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:22:19] 2026-01-09 19:22:19,018 | INFO     | traces error code: 0
[2026-01-09 14:22:19] 2026-01-09 19:22:19,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:22:19] 2026-01-09 19:22:19,134 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:22:19] 2026-01-09 19:22:19,139 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:22:19] 2026-01-09 19:22:19,143 [wrapper] pilotpid: 15477
[2026-01-09 14:22:19] 2026-01-09 19:22:19,147 [wrapper] Pilot exit status: 0
[2026-01-09 14:22:19] 2026-01-09 19:22:19,166 [wrapper] pandaids: 6963165579
[2026-01-09 14:22:19] 2026-01-09 19:22:19,209 [wrapper] cleanup supervisor_pilot 21797 15478
[2026-01-09 14:22:19] 2026-01-09 19:22:19,214 [wrapper] Test setup, not cleaning
[2026-01-09 14:22:19] 2026-01-09 19:22:19,218 [wrapper] apfmon messages muted
[2026-01-09 14:22:19] 2026-01-09 19:22:19,222 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:22:19] 2026-01-09 19:22:19,227 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:22:19]  *** Error codes and diagnostics ***
[2026-01-09 14:22:19]     "exeErrorCode": 0,
[2026-01-09 14:22:19]     "exeErrorDiag": "",
[2026-01-09 14:22:19]     "pilotErrorCode": 0,
[2026-01-09 14:22:19]     "pilotErrorDiag": "",
[2026-01-09 14:22:19]  *** Listing of results directory ***
[2026-01-09 14:22:19] total 442144
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 14:22:19] -rwx------ 1 boincer umatlas     36322 Jan  8 19:59 runpilot2-wrapper.sh
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 20:02 queuedata.json
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas       100 Jan  9 11:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:22:19] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 11:46 run_atlas
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas       105 Jan  9 11:46 job.xml
[2026-01-09 14:22:19] -rw-r--r-- 2 boincer umatlas 222510343 Jan  9 11:46 EVNT.47898824._001347.pool.root.1
[2026-01-09 14:22:19] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 11:46 start_atlas.sh
[2026-01-09 14:22:19] drwxrwx--x 2 boincer umatlas      4096 Jan  9 11:46 shared
[2026-01-09 14:22:19] -rw-r--r-- 2 boincer umatlas    592396 Jan  9 11:46 input.tar.gz
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas         0 Jan  9 11:46 boinc_lockfile
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 11:46 pandaJob.out
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas        57 Jan  9 11:46 setup.sh.local
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas    989356 Jan  9 11:46 agis_schedconf.cvmfs.json
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas   1516240 Jan  9 11:46 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:22:19] drwx------ 5 boincer umatlas      4096 Jan  9 11:46 pilot3
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas      5908 Jan  9 14:20 init_data.xml
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas       529 Jan  9 14:21 boinc_task_state.xml
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas 222906664 Jan  9 14:21 HITS.47898826._034798.pool.root.1
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas      1048 Jan  9 14:21 memory_monitor_summary.json
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas    408708 Jan  9 14:21 log.47898826._034798.job.log.tgz.1
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas        95 Jan  9 14:21 pilot_heartbeat.json
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas      7843 Jan  9 14:21 heartbeat.json
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 14:22 boinc_mmap_file
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas        27 Jan  9 14:22 wrapper_checkpoint.txt
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas      4624 Jan  9 14:22 pilotlog.txt
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas   1301832 Jan  9 14:22 log.47898826._034798.job.log.1
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas       357 Jan  9 14:22 output.list
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas       620 Jan  9 14:22 runtime_log
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas   1730560 Jan  9 14:22 result.tar.gz
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas       659 Jan  9 14:22 WcqLDmM1Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmiylKDmFpKYSn.diag
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas      9337 Jan  9 14:22 runtime_log.err
[2026-01-09 14:22:19] -rw-r--r-- 1 boincer umatlas     21256 Jan  9 14:22 stderr.txt
[2026-01-09 14:22:19] HITS file was successfully produced:
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas 222906664 Jan  9 14:21 shared/HITS.pool.root.1
[2026-01-09 14:22:19]  *** Contents of shared directory: ***
[2026-01-09 14:22:19] total 437276
[2026-01-09 14:22:19] -rw-r--r-- 2 boincer umatlas 222510343 Jan  9 11:46 ATLAS.root_0
[2026-01-09 14:22:19] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 11:46 start_atlas.sh
[2026-01-09 14:22:19] -rw-r--r-- 2 boincer umatlas    592396 Jan  9 11:46 input.tar.gz
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas 222906664 Jan  9 14:21 HITS.pool.root.1
[2026-01-09 14:22:19] -rw------- 1 boincer umatlas   1730560 Jan  9 14:22 result.tar.gz
14:22:21 (11689): run_atlas exited; CPU time 69015.482350
14:22:21 (11689): called boinc_finish(0)

</stderr_txt>
]]>

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