Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:42:04 (3598878): wrapper (7.7.26015): starting
07:42:04 (3598878): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 07:42:04] Arguments: --nthreads 3
[2026-01-10 07:42:04] Threads: 3
[2026-01-10 07:42:04] Checking for CVMFS
[2026-01-10 07:42:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:42:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:42:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:42:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:42:04] 2.9.2.0 2849566 3028 83600 154970 1 57 21464904 36864000 0 130560 0 1951667 99.988 114162 6545 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 07:42:04] CVMFS is ok
[2026-01-10 07:42:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 07:42:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 07:42:04] Further information can be found at the LHC@home message board.
[2026-01-10 07:42:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:42:04] Checking for apptainer binary...
[2026-01-10 07:42:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:42:04] Running /usr/bin/apptainer --version
[2026-01-10 07:42:04] apptainer version 1.4.1-1.1
[2026-01-10 07:42:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:42:04] atlasA303a
[2026-01-10 07:42:04] apptainer works
[2026-01-10 07:42:04] Set ATHENA_PROC_NUMBER=3
[2026-01-10 07:42:04] Set ATHENA_CORE_NUMBER=3
[2026-01-10 07:42:04] Starting ATLAS job with PandaID=6963165544
[2026-01-10 07:42:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:34:23]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:34:23] 2026-01-10 08:33:45,845 | INFO     | will attempt to kill all subprocesses of pid=3609045
[2026-01-10 09:34:23] 2026-01-10 08:33:45,888 | INFO     | process IDs to be killed: [3609045] (in reverse order)
[2026-01-10 09:34:23] 2026-01-10 08:33:45,913 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:34:23] 2026-01-10 08:33:45,913 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:34:23] 2026-01-10 08:33:45,914 | INFO     | did not find any defunct processes belonging to 3609045
[2026-01-10 09:34:23] 2026-01-10 08:33:45,916 | INFO     | did not find any defunct processes belonging to 3609045
[2026-01-10 09:34:23] 2026-01-10 08:33:45,916 | INFO     | ready for new job
[2026-01-10 09:34:23] 2026-01-10 08:33:45,916 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:34:23] 2026-01-10 08:33:45,917 | INFO     | ***************************************
[2026-01-10 09:34:23] 2026-01-10 08:33:45,917 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:34:23] 2026-01-10 08:33:45,917 | INFO     | ***************************************
[2026-01-10 09:34:23] 2026-01-10 08:33:45,917 | INFO     | 
[2026-01-10 09:34:23] 2026-01-10 08:33:45,917 | INFO     | architecture information:
[2026-01-10 09:34:23] 2026-01-10 08:33:45,917 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:34:23] 2026-01-10 08:33:45,926 | INFO     | cat /etc/os-release:
[2026-01-10 09:34:23] NAME="CentOS Linux"
[2026-01-10 09:34:23] VERSION="7 (Core)"
[2026-01-10 09:34:23] ID="centos"
[2026-01-10 09:34:23] ID_LIKE="rhel fedora"
[2026-01-10 09:34:23] VERSION_ID="7"
[2026-01-10 09:34:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:34:23] ANSI_COLOR="0;31"
[2026-01-10 09:34:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:34:23] HOME_URL="https://www.centos.org/"
[2026-01-10 09:34:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:34:23] 
[2026-01-10 09:34:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:34:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:34:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:34:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:34:23] 
[2026-01-10 09:34:23] 2026-01-10 08:33:45,927 | INFO     | ***************************************
[2026-01-10 09:34:23] 2026-01-10 08:33:46,429 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 09:34:23] 2026-01-10 08:33:46,443 | INFO     | sufficient remaining disk space (384222363648 B)
[2026-01-10 09:34:23] 2026-01-10 08:33:46,443 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:34:23] 2026-01-10 08:33:46,443 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:34:23] 2026-01-10 08:33:46,443 | INFO     | update_server=False
[2026-01-10 09:34:23] 2026-01-10 08:33:46,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:34:23] 2026-01-10 08:33:46,443 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:34:23] 2026-01-10 08:33:46,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:34:23] 2026-01-10 08:33:47,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:34:23] 2026-01-10 08:33:47,161 | INFO     | aborting loop
[2026-01-10 09:34:23] 2026-01-10 08:33:47,440 | INFO     | all data control threads have been joined
[2026-01-10 09:34:23] 2026-01-10 08:33:47,449 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:47,449 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:47,737 | INFO     | all payload control threads have been joined
[2026-01-10 09:34:23] 2026-01-10 08:33:47,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:34:23] 2026-01-10 08:33:47,859 | INFO     | all job control threads have been joined
[2026-01-10 09:34:23] 2026-01-10 08:33:47,982 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,166 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,299 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,445 | INFO     | [data] control thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,516 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,536 | INFO     | [job] validate thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,645 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,735 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,743 | INFO     | [payload] control thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,777 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:48,864 | INFO     | [job] control thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:49,844 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:50,451 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:33:56,778 | INFO     | job.realtimelogging is not enabled
[2026-01-10 09:34:23] 2026-01-10 08:33:57,784 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:34:23] 2026-01-10 08:34:16,499 | INFO     | PID=3602600 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:34:23] 2026-01-10 08:34:16,499 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:34:23] 2026-01-10 08:34:16,499 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:34:23] 2026-01-10 08:34:16,499 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:34:23] 2026-01-10 08:34:17,632 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:34:23] 2026-01-10 08:34:17,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140048046241600)>', '<ExcThread(monitor, started 140047693092608)>']
[2026-01-10 09:34:23] 2026-01-10 08:34:18,510 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:34:23] 2026-01-10 08:34:18,510 | INFO     | [monitor] control thread has ended
[2026-01-10 09:34:23] 2026-01-10 08:34:22,920 | INFO     | all workflow threads have been joined
[2026-01-10 09:34:23] 2026-01-10 08:34:22,920 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:34:23] 2026-01-10 08:34:22,920 | INFO     | traces error code: 0
[2026-01-10 09:34:23] 2026-01-10 08:34:22,920 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:34:23] 2026-01-10 08:34:22,971 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:34:23] 2026-01-10 08:34:22,973 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:34:23] 2026-01-10 08:34:22,975 [wrapper] pilotpid: 3602600
[2026-01-10 09:34:23] 2026-01-10 08:34:22,978 [wrapper] Pilot exit status: 0
[2026-01-10 09:34:23] 2026-01-10 08:34:22,986 [wrapper] pandaids: 6963165544
[2026-01-10 09:34:23] 2026-01-10 08:34:23,002 [wrapper] cleanup supervisor_pilot 3623408 3602601
[2026-01-10 09:34:23] 2026-01-10 08:34:23,005 [wrapper] Test setup, not cleaning
[2026-01-10 09:34:23] 2026-01-10 08:34:23,007 [wrapper] apfmon messages muted
[2026-01-10 09:34:23] 2026-01-10 08:34:23,010 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:34:23] 2026-01-10 08:34:23,012 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:34:23]  *** Error codes and diagnostics ***
[2026-01-10 09:34:23]     "exeErrorCode": 0,
[2026-01-10 09:34:23]     "exeErrorDiag": "",
[2026-01-10 09:34:23]     "pilotErrorCode": 0,
[2026-01-10 09:34:23]     "pilotErrorDiag": "",
[2026-01-10 09:34:23]  *** Listing of results directory ***
[2026-01-10 09:34:23] total 436904
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 09:34:23] -rwx------ 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc      5112 Jan  9 02:02 queuedata.json
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc       100 Jan 10 07:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:34:23] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 07:42 run_atlas
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc       105 Jan 10 07:42 job.xml
[2026-01-10 09:34:23] -rw-r--r-- 2 boinc boinc 222838067 Jan 10 07:42 EVNT.47898824._001346.pool.root.1
[2026-01-10 09:34:23] -rw-r--r-- 2 boinc boinc    592401 Jan 10 07:42 input.tar.gz
[2026-01-10 09:34:23] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:42 start_atlas.sh
[2026-01-10 09:34:23] drwxrwx--x 2 boinc boinc      4096 Jan 10 07:42 shared
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:42 boinc_setup_complete
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc      6450 Jan 10 07:42 init_data.xml
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:42 boinc_lockfile
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc      2520 Jan 10 07:42 pandaJob.out
[2026-01-10 09:34:23] -rw------- 1 boinc boinc    989374 Jan 10 07:42 agis_schedconf.cvmfs.json
[2026-01-10 09:34:23] -rw------- 1 boinc boinc   1516240 Jan 10 07:42 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:34:23] drwx------ 5 boinc boinc      4096 Jan 10 07:42 pilot3
[2026-01-10 09:34:23] -rw------- 1 boinc boinc 218149782 Jan 10 09:33 HITS.47898826._034763.pool.root.1
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc       530 Jan 10 09:33 boinc_task_state.xml
[2026-01-10 09:34:23] -rw------- 1 boinc boinc      1024 Jan 10 09:33 memory_monitor_summary.json
[2026-01-10 09:34:23] -rw------- 1 boinc boinc    281275 Jan 10 09:33 log.47898826._034763.job.log.tgz.1
[2026-01-10 09:34:23] -rw------- 1 boinc boinc        95 Jan 10 09:33 pilot_heartbeat.json
[2026-01-10 09:34:23] -rw------- 1 boinc boinc      7747 Jan 10 09:33 heartbeat.json
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc      8192 Jan 10 09:34 boinc_mmap_file
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc        27 Jan 10 09:34 wrapper_checkpoint.txt
[2026-01-10 09:34:23] -rw------- 1 boinc boinc      4824 Jan 10 09:34 pilotlog.txt
[2026-01-10 09:34:23] -rw------- 1 boinc boinc    966824 Jan 10 09:34 log.47898826._034763.job.log.1
[2026-01-10 09:34:23] -rw------- 1 boinc boinc       357 Jan 10 09:34 output.list
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc       620 Jan 10 09:34 runtime_log
[2026-01-10 09:34:23] -rw------- 1 boinc boinc   1269760 Jan 10 09:34 result.tar.gz
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc      8917 Jan 10 09:34 runtime_log.err
[2026-01-10 09:34:23] -rw------- 1 boinc boinc       663 Jan 10 09:34 pM3KDmB1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0jgKDmYGzZtm.diag
[2026-01-10 09:34:23] -rw-r--r-- 1 boinc boinc     10294 Jan 10 09:34 stderr.txt
[2026-01-10 09:34:23] HITS file was successfully produced:
[2026-01-10 09:34:23] -rw------- 1 boinc boinc 218149782 Jan 10 09:33 shared/HITS.pool.root.1
[2026-01-10 09:34:23]  *** Contents of shared directory: ***
[2026-01-10 09:34:23] total 432500
[2026-01-10 09:34:23] -rw-r--r-- 2 boinc boinc 222838067 Jan 10 07:42 ATLAS.root_0
[2026-01-10 09:34:23] -rw-r--r-- 2 boinc boinc    592401 Jan 10 07:42 input.tar.gz
[2026-01-10 09:34:23] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:42 start_atlas.sh
[2026-01-10 09:34:23] -rw------- 1 boinc boinc 218149782 Jan 10 09:33 HITS.pool.root.1
[2026-01-10 09:34:23] -rw------- 1 boinc boinc   1269760 Jan 10 09:34 result.tar.gz
09:34:25 (3598878): run_atlas exited; CPU time 19420.020084
09:34:25 (3598878): called boinc_finish(0)

</stderr_txt>
]]>

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