Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:09:51 (25316): wrapper (7.7.26015): starting
20:09:51 (25316): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 20:09:51] Arguments: --nthreads 8
[2026-01-09 20:09:51] Threads: 8
[2026-01-09 20:09:51] Checking for CVMFS
[2026-01-09 20:09:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:09:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:09:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:09:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:09:51] 2.11.2.0 22272 35816 96196 154954 2 57 12795784 25165825 0 130560 0 16055416 99.852 10931561 2885 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 20:09:51] CVMFS is ok
[2026-01-09 20:09:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:09:51] Checking for apptainer binary...
[2026-01-09 20:09:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:09:51] Running /usr/bin/apptainer --version
[2026-01-09 20:09:51] apptainer version 1.3.2-1.el7
[2026-01-09 20:09:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:09:52] cg-vwn457.simple-grid.lan
[2026-01-09 20:09:52] apptainer works
[2026-01-09 20:09:52] Set ATHENA_PROC_NUMBER=8
[2026-01-09 20:09:52] Set ATHENA_CORE_NUMBER=8
[2026-01-09 20:09:52] Starting ATLAS job with PandaID=6963186873
[2026-01-09 20:09:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:13:34]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:13:35] 2026-01-09 22:12:51,707 | INFO     | time since job start (10965s) is within the limit (349056.0s)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,483 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:13:35] 2026-01-09 22:12:52,484 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2250.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,486 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6963186873/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,486 | INFO     | extracted standard info from prmon json
[2026-01-09 23:13:35] 2026-01-09 22:12:52,487 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:13:35] 2026-01-09 22:12:52,487 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:13:35] 2026-01-09 22:12:52,487 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:13:35] 2026-01-09 22:12:52,487 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:13:35] 2026-01-09 22:12:52,491 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:13:35] 2026-01-09 22:12:52,491 | INFO     | sum of square deviations: 1748737904.5
[2026-01-09 23:13:35] 2026-01-09 22:12:52,493 | INFO     | sum of deviations: 9960422392.99998
[2026-01-09 23:13:35] 2026-01-09 22:12:52,493 | INFO     | mean x: 1767991234.5
[2026-01-09 23:13:35] 2026-01-09 22:12:52,493 | INFO     | mean y: 2483129.853932584
[2026-01-09 23:13:35] 2026-01-09 22:12:52,493 | INFO     | intersect: -10067601951.178564
[2026-01-09 23:13:35] 2026-01-09 22:12:52,494 | INFO     | chi2: 2.322534083286632
[2026-01-09 23:13:35] 2026-01-09 22:12:52,494 | INFO     | sum of square deviations: 1605470102.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,495 | INFO     | sum of deviations: 21376004116.999996
[2026-01-09 23:13:35] 2026-01-09 22:12:52,495 | INFO     | mean x: 1767991082.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,496 | INFO     | mean y: 2494997.1849710983
[2026-01-09 23:13:35] 2026-01-09 22:12:52,496 | INFO     | intersect: -23537391918.536167
[2026-01-09 23:13:35] 2026-01-09 22:12:52,496 | INFO     | chi2: 1.5521994487625528
[2026-01-09 23:13:35] 2026-01-09 22:12:52,496 | INFO     | current chi2=1.5521994487625528 (change=33.167850584736044 %)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,497 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,498 | INFO     | sum of deviations: 20920304074.500004
[2026-01-09 23:13:35] 2026-01-09 22:12:52,498 | INFO     | mean x: 1767990929.5
[2026-01-09 23:13:35] 2026-01-09 22:12:52,498 | INFO     | mean y: 2494483.113095238
[2026-01-09 23:13:35] 2026-01-09 22:12:52,498 | INFO     | intersect: -25154406696.25186
[2026-01-09 23:13:35] 2026-01-09 22:12:52,498 | INFO     | chi2: 1.5533715210664292
[2026-01-09 23:13:35] 2026-01-09 22:12:52,498 | INFO     | current chi2=1.5533715210664292 (change=-0.07551041876807739 %)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,499 | INFO     | right removable region: 167
[2026-01-09 23:13:35] 2026-01-09 22:12:52,506 | INFO     | sum of square deviations: 1605470102.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,507 | INFO     | sum of deviations: -19815727939.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,507 | INFO     | mean x: 1767991387.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,508 | INFO     | mean y: 2514502.5028901733
[2026-01-09 23:13:35] 2026-01-09 22:12:52,508 | INFO     | intersect: 21824182984.30391
[2026-01-09 23:13:35] 2026-01-09 22:12:52,508 | INFO     | chi2: 0.8299452348798553
[2026-01-09 23:13:35] 2026-01-09 22:12:52,508 | INFO     | current chi2=0.8299452348798553 (change=64.26553044571925 %)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,508 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,510 | INFO     | sum of deviations: -21864905605.5
[2026-01-09 23:13:35] 2026-01-09 22:12:52,510 | INFO     | mean x: 1767991539.5
[2026-01-09 23:13:35] 2026-01-09 22:12:52,510 | INFO     | mean y: 2516765.744047619
[2026-01-09 23:13:35] 2026-01-09 22:12:52,510 | INFO     | intersect: 26295320992.522427
[2026-01-09 23:13:35] 2026-01-09 22:12:52,510 | INFO     | chi2: 0.8067660665057254
[2026-01-09 23:13:35] 2026-01-09 22:12:52,510 | INFO     | current chi2=0.8067660665057254 (change=2.7928551668213855 %)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,510 | INFO     | left removable region: 20
[2026-01-09 23:13:35] 2026-01-09 22:12:52,511 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,512 | INFO     | sum of deviations: -8787968965.000002
[2026-01-09 23:13:35] 2026-01-09 22:12:52,512 | INFO     | mean x: 1767991509.0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,512 | INFO     | mean y: 2529792.0544217685
[2026-01-09 23:13:35] 2026-01-09 22:12:52,512 | INFO     | intersect: 15777129937.269907
[2026-01-09 23:13:35] 2026-01-09 22:12:52,512 | INFO     | chi2: 0.01111288292033924
[2026-01-09 23:13:35] 2026-01-09 22:12:52,512 | INFO     | current memory leak: -8.92 B/s (using 147 data points, chi2=0.01)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,513 | INFO     | could have reported an average CPU frequency of 2250 MHz (9 samples)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,513 | INFO     | ..............................
[2026-01-09 23:13:35] 2026-01-09 22:12:52,513 | INFO     | . Timing measurements:
[2026-01-09 23:13:35] 2026-01-09 22:12:52,513 | INFO     | . get job = 0 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,513 | INFO     | . initial setup = 1 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,514 | INFO     | . payload setup = 6 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,514 | INFO     | . stage-in = 0 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,514 | INFO     | . payload execution = 10823 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,514 | INFO     | . stage-out = 5 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,514 | INFO     | . log creation = 1 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,514 | INFO     | ..............................
[2026-01-09 23:13:35] 2026-01-09 22:12:52,685 | INFO     | 
[2026-01-09 23:13:35] 2026-01-09 22:12:52,685 | INFO     | job summary report
[2026-01-09 23:13:35] 2026-01-09 22:12:52,685 | INFO     | --------------------------------------------------
[2026-01-09 23:13:35] 2026-01-09 22:12:52,685 | INFO     | PanDA job id: 6963186873
[2026-01-09 23:13:35] 2026-01-09 22:12:52,685 | INFO     | task id: 47898826
[2026-01-09 23:13:35] 2026-01-09 22:12:52,685 | INFO     | errors: (none)
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | pilot state: finished 
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | transexitcode: 0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | exeerrorcode: 0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | exeerrordiag: 
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | exitcode: 0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | exitmsg: OK
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | cpuconsumptiontime: 69515 s
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | nevents: 400
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | neventsw: 0
[2026-01-09 23:13:35] 2026-01-09 22:12:52,686 | INFO     | pid: 3102
[2026-01-09 23:13:35] 2026-01-09 22:12:52,687 | INFO     | pgrp: 3102
[2026-01-09 23:13:35] 2026-01-09 22:12:52,687 | INFO     | corecount: 8
[2026-01-09 23:13:35] 2026-01-09 22:12:52,687 | INFO     | event service: False
[2026-01-09 23:13:35] 2026-01-09 22:12:52,687 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 10834: 2312856, 10841: 2321884, 10843: 2321940, 10950: 2322326}
[2026-01-09 23:13:35] 2026-01-09 22:12:52,687 | INFO     | --------------------------------------------------
[2026-01-09 23:13:35] 2026-01-09 22:12:52,687 | INFO     | 
[2026-01-09 23:13:35] 2026-01-09 22:12:52,687 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-09 23:13:35] 2026-01-09 22:12:53,328 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,329 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,329 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,329 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,329 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,329 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,329 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,329 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,330 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:13:35] 2026-01-09 22:12:53,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:13:35] 2026-01-09 22:12:53,331 | INFO     | job 6963186873 has completed (purged errors)
[2026-01-09 23:13:35] 2026-01-09 22:12:53,331 | INFO     | overall cleanup function is called
[2026-01-09 23:13:35] 2026-01-09 22:12:54,340 | INFO     | --- collectZombieJob: --- 10, [3102]
[2026-01-09 23:13:35] 2026-01-09 22:12:54,340 | INFO     | zombie collector waiting for pid 3102
[2026-01-09 23:13:35] 2026-01-09 22:12:54,340 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:13:35] 2026-01-09 22:12:54,340 | INFO     | collected zombie processes
[2026-01-09 23:13:35] 2026-01-09 22:12:54,340 | INFO     | will attempt to kill all subprocesses of pid=3102
[2026-01-09 23:13:35] 2026-01-09 22:12:54,437 | INFO     | process IDs to be killed: [3102] (in reverse order)
[2026-01-09 23:13:35] 2026-01-09 22:12:55,250 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:13:35] 2026-01-09 22:12:55,251 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:13:35] 2026-01-09 22:12:55,253 | INFO     | did not find any defunct processes belonging to 3102
[2026-01-09 23:13:35] 2026-01-09 22:12:55,254 | INFO     | did not find any defunct processes belonging to 3102
[2026-01-09 23:13:35] 2026-01-09 22:12:55,255 | INFO     | ready for new job
[2026-01-09 23:13:35] 2026-01-09 22:12:55,255 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:13:35] 2026-01-09 22:12:55,257 | INFO     | ***************************************
[2026-01-09 23:13:35] 2026-01-09 22:12:55,257 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:13:35] 2026-01-09 22:12:55,257 | INFO     | ***************************************
[2026-01-09 23:13:35] 2026-01-09 22:12:55,257 | INFO     | 
[2026-01-09 23:13:35] 2026-01-09 22:12:55,257 | INFO     | pilot is running in a VM
[2026-01-09 23:13:35] 2026-01-09 22:12:55,258 | INFO     | architecture information:
[2026-01-09 23:13:35] 2026-01-09 22:12:55,258 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:13:35] 2026-01-09 22:12:55,299 | INFO     | cat /etc/os-release:
[2026-01-09 23:13:35] NAME="CentOS Linux"
[2026-01-09 23:13:35] VERSION="7 (Core)"
[2026-01-09 23:13:35] ID="centos"
[2026-01-09 23:13:35] ID_LIKE="rhel fedora"
[2026-01-09 23:13:35] VERSION_ID="7"
[2026-01-09 23:13:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:13:35] ANSI_COLOR="0;31"
[2026-01-09 23:13:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:13:35] HOME_URL="https://www.centos.org/"
[2026-01-09 23:13:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:13:35] 
[2026-01-09 23:13:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:13:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:13:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:13:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:13:35] 
[2026-01-09 23:13:35] 2026-01-09 22:12:55,300 | INFO     | ***************************************
[2026-01-09 23:13:35] 2026-01-09 22:12:55,803 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-09 23:13:35] 2026-01-09 22:12:55,977 | INFO     | sufficient remaining disk space (497587060736 B)
[2026-01-09 23:13:35] 2026-01-09 22:12:55,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:13:35] 2026-01-09 22:12:55,978 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:13:35] 2026-01-09 22:12:55,978 | INFO     | update_server=False
[2026-01-09 23:13:35] 2026-01-09 22:12:55,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:13:35] 2026-01-09 22:12:55,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:13:35] 2026-01-09 22:12:56,264 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:13:35] 2026-01-09 22:12:56,264 | INFO     | aborting loop
[2026-01-09 23:13:35] 2026-01-09 22:12:56,459 | INFO     | all payload control threads have been joined
[2026-01-09 23:13:35] 2026-01-09 22:12:56,675 | INFO     | all data control threads have been joined
[2026-01-09 23:13:35] 2026-01-09 22:12:56,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:13:35] 2026-01-09 22:12:56,854 | INFO     | all job control threads have been joined
[2026-01-09 23:13:35] 2026-01-09 22:12:56,984 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,163 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,270 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,465 | INFO     | [payload] control thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,681 | INFO     | [data] control thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,685 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:13:35] 2026-01-09 22:12:57,782 | INFO     | [job] validate thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,860 | INFO     | [job] control thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,937 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:57,980 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:58,099 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:58,165 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:58,282 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:58,337 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:58,691 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:58,827 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:12:59,988 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:13:35] 2026-01-09 22:13:24,206 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:13:35] 2026-01-09 22:13:24,863 | INFO     | PID=29056 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 23:13:35] 2026-01-09 22:13:24,863 | INFO     | .. there are 2 such processes running
[2026-01-09 23:13:35] 2026-01-09 22:13:24,863 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:13:35] 2026-01-09 22:13:24,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:13:35] 2026-01-09 22:13:24,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:13:35] 2026-01-09 22:13:25,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140121060722496)>', '<ExcThread(monitor, started 140120464279296)>']
[2026-01-09 23:13:35] 2026-01-09 22:13:25,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:13:35] 2026-01-09 22:13:25,870 | INFO     | [monitor] control thread has ended
[2026-01-09 23:13:35] 2026-01-09 22:13:30,267 | INFO     | all workflow threads have been joined
[2026-01-09 23:13:35] 2026-01-09 22:13:30,267 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:13:35] 2026-01-09 22:13:30,267 | INFO     | traces error code: 0
[2026-01-09 23:13:35] 2026-01-09 22:13:30,268 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:13:35] 2026-01-09 22:13:30,590 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:13:35] 2026-01-09 22:13:30,676 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:13:35] 2026-01-09 22:13:30,792 [wrapper] pilotpid: 29056
[2026-01-09 23:13:35] 2026-01-09 22:13:30,891 [wrapper] Pilot exit status: 0
[2026-01-09 23:13:35] 2026-01-09 22:13:31,236 [wrapper] pandaids: 6963186873
[2026-01-09 23:13:35] 2026-01-09 22:13:32,048 [wrapper] cleanup supervisor_pilot  4489 29057
[2026-01-09 23:13:35] 2026-01-09 22:13:32,169 [wrapper] Test setup, not cleaning
[2026-01-09 23:13:35] 2026-01-09 22:13:32,255 [wrapper] apfmon messages muted
[2026-01-09 23:13:35] 2026-01-09 22:13:32,352 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:13:35] 2026-01-09 22:13:32,439 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:13:35]  *** Error codes and diagnostics ***
[2026-01-09 23:13:35]     "exeErrorCode": 0,
[2026-01-09 23:13:35]     "exeErrorDiag": "",
[2026-01-09 23:13:35]     "pilotErrorCode": 0,
[2026-01-09 23:13:35]     "pilotErrorDiag": "",
[2026-01-09 23:13:35]  *** Listing of results directory ***
[2026-01-09 23:13:35] total 441784
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 23:13:35] -rwx------. 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc       100 Jan  9 20:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:13:35] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 20:09 run_atlas
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc       105 Jan  9 20:09 job.xml
[2026-01-09 23:13:35] -rw-r--r--. 2 boinc boinc 225680012 Jan  9 20:09 EVNT.47898824._001410.pool.root.1
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc      6391 Jan  9 20:09 init_data.xml
[2026-01-09 23:13:35] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:09 start_atlas.sh
[2026-01-09 23:13:35] drwxrwx--x. 2 boinc boinc        68 Jan  9 20:09 shared
[2026-01-09 23:13:35] -rw-r--r--. 2 boinc boinc    592402 Jan  9 20:09 input.tar.gz
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc         0 Jan  9 20:09 boinc_lockfile
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc      2519 Jan  9 20:09 pandaJob.out
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc    989372 Jan  9 20:10 agis_schedconf.cvmfs.json
[2026-01-09 23:13:35] drwx------. 5 boinc boinc      4096 Jan  9 20:10 pilot3
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc 219039927 Jan  9 23:09 HITS.47898826._036781.pool.root.1
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc       530 Jan  9 23:09 boinc_task_state.xml
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc      1018 Jan  9 23:10 memory_monitor_summary.json
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc   1516240 Jan  9 23:11 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc    402471 Jan  9 23:11 log.47898826._036781.job.log.tgz.1
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc        95 Jan  9 23:12 pilot_heartbeat.json
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc      7783 Jan  9 23:12 heartbeat.json
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc        28 Jan  9 23:13 wrapper_checkpoint.txt
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc      8192 Jan  9 23:13 boinc_mmap_file
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc      4885 Jan  9 23:13 pilotlog.txt
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc   1480066 Jan  9 23:13 log.47898826._036781.job.log.1
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc       357 Jan  9 23:13 output.list
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc       620 Jan  9 23:13 runtime_log
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc   1904640 Jan  9 23:13 result.tar.gz
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc      8833 Jan  9 23:13 runtime_log.err
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc       656 Jan  9 23:13 jzqMDmO0Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZggKDmlUUFSn.diag
[2026-01-09 23:13:35] -rw-r--r--. 1 boinc boinc     20653 Jan  9 23:13 stderr.txt
[2026-01-09 23:13:35] HITS file was successfully produced:
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc 219039927 Jan  9 23:09 shared/HITS.pool.root.1
[2026-01-09 23:13:35]  *** Contents of shared directory: ***
[2026-01-09 23:13:35] total 436756
[2026-01-09 23:13:35] -rw-r--r--. 2 boinc boinc 225680012 Jan  9 20:09 ATLAS.root_0
[2026-01-09 23:13:35] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:09 start_atlas.sh
[2026-01-09 23:13:35] -rw-r--r--. 2 boinc boinc    592402 Jan  9 20:09 input.tar.gz
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc 219039927 Jan  9 23:09 HITS.pool.root.1
[2026-01-09 23:13:35] -rw-------. 1 boinc boinc   1904640 Jan  9 23:13 result.tar.gz
23:13:36 (25316): run_atlas exited; CPU time 69588.802728
23:13:36 (25316): called boinc_finish(0)

</stderr_txt>
]]>

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