Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-09 16:24:14 (16828): vboxwrapper version 26210
2026-01-09 16:24:14 (16828): BOINC client version: 8.2.8
2026-01-09 16:24:15 (16828): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2026-01-09 16:24:15 (16828): Successfully copied 'init_data.xml' to the shared directory.
2026-01-09 16:24:16 (16828): Create VM. (boinc_2bd7582ad409665f, slot#7)
2026-01-09 16:24:16 (16828): Setting Memory Size for VM. (4400MB)
2026-01-09 16:24:16 (16828): Setting CPU Count for VM. (4)
2026-01-09 16:24:17 (16828): Setting Chipset Options for VM.
2026-01-09 16:24:17 (16828): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-09 16:24:17 (16828): Setting Boot Options for VM.
2026-01-09 16:24:18 (16828): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-09 16:24:18 (16828): Enabling VM Network Access.
2026-01-09 16:24:18 (16828): Disabling USB Support for VM.
2026-01-09 16:24:19 (16828): Disabling COM Port Support for VM.
2026-01-09 16:24:19 (16828): Disabling LPT Port Support for VM.
2026-01-09 16:24:19 (16828): Disabling Audio Support for VM.
2026-01-09 16:24:19 (16828): Disabling Clipboard Support for VM.
2026-01-09 16:24:20 (16828): Disabling Drag and Drop Support for VM.
2026-01-09 16:24:20 (16828): Adding storage controller(s) to VM.
2026-01-09 16:24:20 (16828): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-09 16:24:22 (16828): Adding VirtualBox Guest Additions to VM.
2026-01-09 16:24:23 (16828): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-09 16:24:23 (16828): forwarding host port 54537 to guest port 80
2026-01-09 16:24:23 (16828): Enabling remote desktop for VM.
2026-01-09 16:24:23 (16828): Required extension pack not installed, remote desktop not enabled.
2026-01-09 16:24:23 (16828): Enabling shared directory for VM.
2026-01-09 16:24:24 (16828): Starting VM using VBoxManage interface. (boinc_2bd7582ad409665f, slot#7)
2026-01-09 16:24:30 (16828): Successfully started VM. (PID = '18372')
2026-01-09 16:24:30 (16828): Reporting VM Process ID to BOINC.
2026-01-09 16:24:30 (16828): Guest Log: BIOS: VirtualBox 7.2.4
2026-01-09 16:24:30 (16828): Guest Log: CPUID EDX: 0x178bfbff
2026-01-09 16:24:30 (16828): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-09 16:24:30 (16828): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-09 16:24:30 (16828): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-09 16:24:30 (16828): Detected: Web Application Enabled (http://localhost:54537)
2026-01-09 16:24:30 (16828): Preference change detected
2026-01-09 16:24:30 (16828): Setting CPU throttle for VM. (100%)
2026-01-09 16:24:30 (16828): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-09 16:24:32 (16828): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-09 16:24:32 (16828): Guest Log: BIOS: Booting from Hard Disk...
2026-01-09 16:24:35 (16828): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-09 16:24:35 (16828): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-09 16:24:35 (16828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-09 16:24:42 (16828): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-09 16:24:42 (16828): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-09 16:24:48 (16828): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.000172 main     Log opened 2026-01-09T16:24:46.776151000Z
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.000287 main     OS Product: Linux
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.000326 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.000358 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.000391 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.000392 main     Process ID: 1309
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.000392 main     Package type: LINUX_64BITS_GENERIC
2026-01-09 16:24:48 (16828): Guest Log: 00:00:00.001111 main     5.2.32 r132073 started. Verbose level = 0
2026-01-09 16:24:48 (16828): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-09 16:24:48 (16828): Guest Log: [INFO] Mounting shared directory
2026-01-09 16:24:48 (16828): Guest Log: [INFO] Checking for init_data.xml
2026-01-09 16:24:52 (16828): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-09 16:24:52 (16828): Guest Log: [INFO] Detected branch: prod
2026-01-09 16:24:52 (16828): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-09 16:24:52 (16828): Guest Log: Copying input files
2026-01-09 16:24:54 (16828): Guest Log: Copied input files into RunAtlas.
2026-01-09 16:24:54 (16828): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-09 16:24:54 (16828): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-09 16:24:54 (16828): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-09 16:24:54 (16828): Guest Log: Further information can be found at the LHC@home message board.
2026-01-09 16:24:58 (16828): Guest Log: 00:00:10.003703 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 142 909 000ns (GuestNow=1 767 997 497 921 781 000 ns GuestLast=1 767 975 886 778 872 000 ns fSetTimeLastLoop=true )
2026-01-09 16:25:02 (16828): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-09 16:25:02 (16828): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-09 16:25:02 (16828): Guest Log: 2.6.3.0 1586 0 30128 154959 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-01-09 16:25:03 (16828): Guest Log: copied the webapp to /var/www
2026-01-09 16:25:03 (16828): Guest Log: ATHENA_PROC_NUMBER=4
2026-01-09 16:25:03 (16828): Guest Log: ATHENA_CORE_NUMBER=4
2026-01-09 16:25:04 (16828): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-09 16:25:04 (16828): Guest Log:  *** Starting ATLAS job. (PandaID=6963381811 taskID=47962010) ***
2026-01-09 18:04:33 (16828): Status Report: Elapsed Time: '6000.000000'
2026-01-09 18:04:33 (16828): Status Report: CPU Time: '21432.359375'
2026-01-09 19:44:35 (16828): Status Report: Elapsed Time: '12000.000000'
2026-01-09 19:44:35 (16828): Status Report: CPU Time: '45168.609375'
2026-01-09 21:24:38 (16828): Status Report: Elapsed Time: '18000.000000'
2026-01-09 21:24:38 (16828): Status Report: CPU Time: '68926.328125'
2026-01-09 23:04:41 (16828): Status Report: Elapsed Time: '24000.000000'
2026-01-09 23:04:41 (16828): Status Report: CPU Time: '92686.250000'
2026-01-10 00:44:43 (16828): Status Report: Elapsed Time: '30000.000000'
2026-01-10 00:44:43 (16828): Status Report: CPU Time: '116441.250000'
2026-01-10 02:24:46 (16828): Status Report: Elapsed Time: '36000.000000'
2026-01-10 02:24:46 (16828): Status Report: CPU Time: '140190.468750'
2026-01-10 04:04:49 (16828): Status Report: Elapsed Time: '42000.000000'
2026-01-10 04:04:49 (16828): Status Report: CPU Time: '163947.796875'
2026-01-10 05:44:52 (16828): Status Report: Elapsed Time: '48000.000000'
2026-01-10 05:44:52 (16828): Status Report: CPU Time: '187702.750000'
2026-01-10 07:24:54 (16828): Status Report: Elapsed Time: '54000.000000'
2026-01-10 07:24:54 (16828): Status Report: CPU Time: '211462.281250'
2026-01-10 09:04:57 (16828): Status Report: Elapsed Time: '60000.000000'
2026-01-10 09:04:57 (16828): Status Report: CPU Time: '235215.046875'
2026-01-10 09:16:59 (16828): Guest Log:  *** Job finished ***
2026-01-10 09:16:59 (16828): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-10 09:16:59 (16828): Guest Log: 2026-01-10 15:16:24,033 | INFO     | end of generic workflow (traces error code: 0)
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:24,034 | INFO     | traces error code: 0
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:24,034 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,533 | INFO     | PID=5987 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,534 | INFO     | found 0 job(s) in 20 queues
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,534 | CRITICAL | thread 'MainThread' is not alive
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,534 | INFO     | [monitor] control thread has ended
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,616 [wrapper] ==== pilot stdout END ====
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,621 [wrapper] ==== wrapper stdout RESUME ====
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,626 [wrapper] pilotpid: 5987
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,631 [wrapper] Pilot exit status: 0
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,649 [wrapper] pandaids: 6963381811
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,680 [wrapper] cleanup supervisor_pilot 25307 5988
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,684 [wrapper] Test setup, not cleaning
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,690 [wrapper] apfmon messages muted
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,695 [wrapper] ==== wrapper stdout END ====
2026-01-10 09:17:00 (16828): Guest Log: 2026-01-10 15:16:40,700 [wrapper] ==== wrapper stderr END ====
2026-01-10 09:17:00 (16828): Guest Log:  *** Error codes and diagnostics ***
2026-01-10 09:17:00 (16828): Guest Log:     "exeErrorCode": 0,
2026-01-10 09:17:00 (16828): Guest Log:     "exeErrorDiag": "",
2026-01-10 09:17:00 (16828): Guest Log:     "pilotErrorCode": 0,
2026-01-10 09:17:00 (16828): Guest Log:     "pilotErrorDiag": "",
2026-01-10 09:17:00 (16828): Guest Log:  *** Listing of results directory ***
2026-01-10 09:17:00 (16828): Guest Log: total 794556
2026-01-10 09:17:00 (16828): Guest Log: -rwx------. 1 atlas atlas     36322 Jan  9 07:17 runpilot2-wrapper.sh
2026-01-10 09:17:00 (16828): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Jan  9 07:20 pilot3.tar.gz
2026-01-10 09:17:00 (16828): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jan  9 07:21 queuedata.json
2026-01-10 09:17:00 (16828): Guest Log: -rwxr-xr-x. 1 atlas atlas      8683 Jan  9 22:24 init_data.xml
2026-01-10 09:17:00 (16828): Guest Log: -rwxr-xr-x. 1 atlas atlas    592620 Jan  9 22:24 input.tar.gz
2026-01-10 09:17:00 (16828): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Jan  9 22:24 start_atlas.sh
2026-01-10 09:17:00 (16828): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan  9 22:24 EVNT.47962006._000122.pool.root.1 -> /data/./ATLAS.root_0
2026-01-10 09:17:00 (16828): Guest Log: -rw-r--r--. 1 atlas atlas      2893 Jan  9 22:25 pandaJob.out
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas    989375 Jan  9 22:26 agis_schedconf.cvmfs.json
2026-01-10 09:17:00 (16828): Guest Log: drwx------. 5 atlas atlas      4096 Jan  9 22:26 pilot3
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas 790343754 Jan 10 15:15 HITS.47962010._001759.pool.root.1
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas      1039 Jan 10 15:15 memory_monitor_summary.json
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas        95 Jan 10 15:15 pilot_heartbeat.json
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas   1516240 Jan 10 15:16 agis_ddmendpoints.agis.ALL.json
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas   1686044 Jan 10 15:16 log.47962010._001759.job.log.tgz.1
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas      8627 Jan 10 15:16 heartbeat.json
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas       814 Jan 10 15:16 pilotlog.txt
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas   8031752 Jan 10 15:16 log.47962010._001759.job.log.1
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas       353 Jan 10 15:16 output.list
2026-01-10 09:17:00 (16828): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 10 15:16 runtime_log
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas   9738240 Jan 10 15:16 result.tar.gz
2026-01-10 09:17:00 (16828): Guest Log: -rw-r--r--. 1 atlas atlas      8759 Jan 10 15:16 runtime_log.err
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas       665 Jan 10 15:16 qv9LDmRvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmadmKDmhGq3Rm.diag
2026-01-10 09:17:00 (16828): Guest Log: Looking for outputfile HITS.47962010._001759.pool.root.1
2026-01-10 09:17:00 (16828): Guest Log: HITS file was successfully produced
2026-01-10 09:17:00 (16828): Guest Log: -rw-------. 1 atlas atlas 790343754 Jan 10 15:15 /home/atlas/RunAtlas/HITS.47962010._001759.pool.root.1
2026-01-10 09:17:03 (16828): Guest Log: Successfully finished the ATLAS job!
2026-01-10 09:17:03 (16828): Guest Log: Copying the results back to the shared directory!
2026-01-10 09:17:03 (16828): Guest Log:  *** Contents of shared directory: ***
2026-01-10 09:17:04 (16828): Guest Log: total 1165000
2026-01-10 09:17:04 (16828): Guest Log: -rwxrwxrwx. 1 root root 392245836 Jan  9 22:24 ATLAS.root_0
2026-01-10 09:17:04 (16828): Guest Log: -rwxrwxrwx. 1 root root 790343754 Jan 10  2026 HITS.pool.root.1
2026-01-10 09:17:04 (16828): Guest Log: -rwxrwxrwx. 1 root root      8683 Jan  9 22:24 init_data.xml
2026-01-10 09:17:04 (16828): Guest Log: -rwxrwxrwx. 1 root root    592620 Jan  9 16:34 input.tar.gz
2026-01-10 09:17:04 (16828): Guest Log: -rwxrwxrwx. 1 root root   9738240 Jan 10  2026 result.tar.gz
2026-01-10 09:17:04 (16828): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 16:34 start_atlas.sh
2026-01-10 09:17:04 (16828): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-10 09:17:04 (16828): VM Completion File Detected.
2026-01-10 09:17:04 (16828): Powering off VM.
2026-01-10 09:17:05 (16828): Successfully stopped VM.
2026-01-10 09:17:05 (16828): Deregistering VM. (boinc_2bd7582ad409665f, slot#7)
2026-01-10 09:17:05 (16828): Removing network bandwidth throttle group from VM.
2026-01-10 09:17:05 (16828): Removing VM from VirtualBox.
2026-01-10 09:17:10 (16828): called boinc_finish(0)

</stderr_txt>
]]>

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