Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:52:27 (38825): wrapper (7.7.26015): starting
11:52:27 (38825): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 11:52:27] Arguments: --nthreads 8
[2026-01-09 11:52:27] Threads: 8
[2026-01-09 11:52:27] Checking for CVMFS
[2026-01-09 11:52:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:52:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:52:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:52:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:52:28] 2.13.3.0 10021 21777 178372 154950 3 412 20445802 39288833 8828 16776704 0 9001862 99.477 12128636 37980 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 11:52:28] CVMFS is ok
[2026-01-09 11:52:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:52:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:52:28] Further information can be found at the LHC@home message board.
[2026-01-09 11:52:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:52:28] Checking for apptainer binary...
[2026-01-09 11:52:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:52:28] Running /usr/bin/apptainer --version
[2026-01-09 11:52:28] apptainer version 1.4.5-2.el9
[2026-01-09 11:52:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:52:28] c-211-4.aglt2.org
[2026-01-09 11:52:28] apptainer works
[2026-01-09 11:52:28] Set ATHENA_PROC_NUMBER=8
[2026-01-09 11:52:28] Set ATHENA_CORE_NUMBER=8
[2026-01-09 11:52:28] Starting ATLAS job with PandaID=6963163275
[2026-01-09 11:52:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:05:50]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:05:50] 2026-01-10 02:05:05,458 | INFO     | monitor loop #2005: job 0:6963163275 is in state 'finished'
[2026-01-09 21:05:50] 2026-01-10 02:05:05,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:05:50] 2026-01-10 02:05:07,069 | INFO     | time since job start (33145s) is within the limit (349056.0s)
[2026-01-09 21:05:50] 2026-01-10 02:05:07,967 | INFO     | monitor loop #2006: job 0:6963163275 is in state 'finished'
[2026-01-09 21:05:50] 2026-01-10 02:05:07,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:05:50] 2026-01-10 02:05:09,075 | INFO     | time since job start (33147s) is within the limit (349056.0s)
[2026-01-09 21:05:50] 2026-01-10 02:05:10,475 | INFO     | monitor loop #2007: job 0:6963163275 is in state 'finished'
[2026-01-09 21:05:50] 2026-01-10 02:05:10,475 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,097 | INFO     | time since job start (33149s) is within the limit (349056.0s)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,676 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 21:05:50] 2026-01-10 02:05:11,685 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.9230750000006
[2026-01-09 21:05:50] 2026-01-10 02:05:11,698 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963163275/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,699 | INFO     | extracted standard info from prmon json
[2026-01-09 21:05:50] 2026-01-10 02:05:11,699 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:05:50] 2026-01-10 02:05:11,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:05:50] 2026-01-10 02:05:11,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 21:05:50] 2026-01-10 02:05:11,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 21:05:50] 2026-01-10 02:05:11,710 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:05:50] 2026-01-10 02:05:11,711 | INFO     | sum of square deviations: 49647833747.93394
[2026-01-09 21:05:50] 2026-01-10 02:05:11,719 | INFO     | sum of deviations: 14533597447.900543
[2026-01-09 21:05:50] 2026-01-10 02:05:11,719 | INFO     | mean x: 1767994131.0110497
[2026-01-09 21:05:50] 2026-01-10 02:05:11,719 | INFO     | mean y: 2548158.6832412523
[2026-01-09 21:05:50] 2026-01-10 02:05:11,719 | INFO     | intersect: -515003425.1546865
[2026-01-09 21:05:50] 2026-01-10 02:05:11,720 | INFO     | chi2: 1.6342003806892567
[2026-01-09 21:05:50] 2026-01-10 02:05:11,721 | INFO     | sum of square deviations: 48289243272.18576
[2026-01-09 21:05:50] 2026-01-10 02:05:11,729 | INFO     | sum of deviations: 11635827004.178461
[2026-01-09 21:05:50] 2026-01-10 02:05:11,729 | INFO     | mean x: 1767993978.5241635
[2026-01-09 21:05:50] 2026-01-10 02:05:11,730 | INFO     | mean y: 2547835.063197026
[2026-01-09 21:05:50] 2026-01-10 02:05:11,730 | INFO     | intersect: -423469859.24152476
[2026-01-09 21:05:50] 2026-01-10 02:05:11,731 | INFO     | chi2: 1.6309837725262812
[2026-01-09 21:05:50] 2026-01-10 02:05:11,731 | INFO     | current chi2=1.6309837725262812 (change=0.19683070699192665 %)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,731 | INFO     | right removable region: 537
[2026-01-09 21:05:50] 2026-01-10 02:05:11,732 | INFO     | sum of square deviations: 48288509549.680466
[2026-01-09 21:05:50] 2026-01-10 02:05:11,739 | INFO     | sum of deviations: -58261061960.208115
[2026-01-09 21:05:50] 2026-01-10 02:05:11,739 | INFO     | mean x: 1767994283.5390334
[2026-01-09 21:05:50] 2026-01-10 02:05:11,740 | INFO     | mean y: 2556284.6765799257
[2026-01-09 21:05:50] 2026-01-10 02:05:11,740 | INFO     | intersect: 2135677092.486706
[2026-01-09 21:05:50] 2026-01-10 02:05:11,741 | INFO     | chi2: 0.33575582969789347
[2026-01-09 21:05:50] 2026-01-10 02:05:11,741 | INFO     | current chi2=0.33575582969789347 (change=79.45442715193336 %)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,741 | INFO     | sum of square deviations: 46954306932.95696
[2026-01-09 21:05:50] 2026-01-10 02:05:11,749 | INFO     | sum of deviations: -38182324215.74859
[2026-01-09 21:05:50] 2026-01-10 02:05:11,749 | INFO     | mean x: 1767994436.0619137
[2026-01-09 21:05:50] 2026-01-10 02:05:11,749 | INFO     | mean y: 2553984.2045028144
[2026-01-09 21:05:50] 2026-01-10 02:05:11,749 | INFO     | intersect: 1440252486.83054
[2026-01-09 21:05:50] 2026-01-10 02:05:11,750 | INFO     | chi2: 0.2877807156252425
[2026-01-09 21:05:50] 2026-01-10 02:05:11,750 | INFO     | current chi2=0.2877807156252425 (change=14.288691313511384 %)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,750 | INFO     | left removable region: 20
[2026-01-09 21:05:50] 2026-01-10 02:05:11,751 | INFO     | sum of square deviations: 42851424782.359795
[2026-01-09 21:05:50] 2026-01-10 02:05:11,758 | INFO     | sum of deviations: 18737775297.33076
[2026-01-09 21:05:50] 2026-01-10 02:05:11,758 | INFO     | mean x: 1767994558.1044488
[2026-01-09 21:05:50] 2026-01-10 02:05:11,758 | INFO     | mean y: 2546554.160541586
[2026-01-09 21:05:50] 2026-01-10 02:05:11,758 | INFO     | intersect: -770549904.7068503
[2026-01-09 21:05:50] 2026-01-10 02:05:11,759 | INFO     | chi2: 0.07899003489453092
[2026-01-09 21:05:50] 2026-01-10 02:05:11,759 | INFO     | current memory leak: 0.44 B/s (using 517 data points, chi2=0.08)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,760 | INFO     | could have reported an average CPU frequency of 2599 MHz (21 samples)
[2026-01-09 21:05:50] 2026-01-10 02:05:11,760 | INFO     | ..............................
[2026-01-09 21:05:50] 2026-01-10 02:05:11,760 | INFO     | . Timing measurements:
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | . get job = 0 s
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | . initial setup = 2 s
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | . payload setup = 7 s
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | . stage-in = 0 s
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | . payload execution = 33107 s
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | . stage-out = 3 s
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | . log creation = 0 s
[2026-01-09 21:05:50] 2026-01-10 02:05:11,761 | INFO     | ..............................
[2026-01-09 21:05:50] 2026-01-10 02:05:12,071 | INFO     | 
[2026-01-09 21:05:50] 2026-01-10 02:05:12,071 | INFO     | job summary report
[2026-01-09 21:05:50] 2026-01-10 02:05:12,071 | INFO     | --------------------------------------------------
[2026-01-09 21:05:50] 2026-01-10 02:05:12,071 | INFO     | PanDA job id: 6963163275
[2026-01-09 21:05:50] 2026-01-10 02:05:12,071 | INFO     | task id: 47898826
[2026-01-09 21:05:50] 2026-01-10 02:05:12,071 | INFO     | errors: (none)
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | pilot state: finished 
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | transexitcode: 0
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | exeerrorcode: 0
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | exeerrordiag: 
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | exitcode: 0
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | exitmsg: OK
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | cpuconsumptiontime: 70348 s
[2026-01-09 21:05:50] 2026-01-10 02:05:12,072 | INFO     | nevents: 400
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | neventsw: 0
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | pid: 48908
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | pgrp: 48908
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | corecount: 8
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | event service: False
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | sizes: {0: 2283744, 1: 2283999, 7: 2284261, 12: 2284289, 33119: 2323893, 33123: 2332891, 33124: 2333075, 33133: 2333269}
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | --------------------------------------------------
[2026-01-09 21:05:50] 2026-01-10 02:05:12,073 | INFO     | 
[2026-01-09 21:05:50] 2026-01-10 02:05:12,074 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 21:05:50] 2026-01-10 02:05:12,261 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,261 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,261 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,262 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:05:50] 2026-01-10 02:05:12,263 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,264 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:05:50] 2026-01-10 02:05:12,264 | INFO     | job 6963163275 has completed (purged errors)
[2026-01-09 21:05:50] 2026-01-10 02:05:12,264 | INFO     | overall cleanup function is called
[2026-01-09 21:05:50] 2026-01-10 02:05:13,275 | INFO     | --- collectZombieJob: --- 10, [48908]
[2026-01-09 21:05:50] 2026-01-10 02:05:13,275 | INFO     | zombie collector waiting for pid 48908
[2026-01-09 21:05:50] 2026-01-10 02:05:13,275 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:05:50] 2026-01-10 02:05:13,275 | INFO     | collected zombie processes
[2026-01-09 21:05:50] 2026-01-10 02:05:13,275 | INFO     | will attempt to kill all subprocesses of pid=48908
[2026-01-09 21:05:50] 2026-01-10 02:05:13,578 | INFO     | process IDs to be killed: [48908] (in reverse order)
[2026-01-09 21:05:50] 2026-01-10 02:05:13,656 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:05:50] 2026-01-10 02:05:13,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:05:50] 2026-01-10 02:05:13,667 | INFO     | did not find any defunct processes belonging to 48908
[2026-01-09 21:05:50] 2026-01-10 02:05:13,674 | INFO     | did not find any defunct processes belonging to 48908
[2026-01-09 21:05:50] 2026-01-10 02:05:13,674 | INFO     | ready for new job
[2026-01-09 21:05:50] 2026-01-10 02:05:13,674 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:05:50] 2026-01-10 02:05:13,677 | INFO     | ***************************************
[2026-01-09 21:05:50] 2026-01-10 02:05:13,677 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:05:50] 2026-01-10 02:05:13,677 | INFO     | ***************************************
[2026-01-09 21:05:50] 2026-01-10 02:05:13,677 | INFO     | 
[2026-01-09 21:05:50] 2026-01-10 02:05:13,679 | INFO     | architecture information:
[2026-01-09 21:05:50] 2026-01-10 02:05:13,680 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:05:50] 2026-01-10 02:05:13,694 | INFO     | cat /etc/os-release:
[2026-01-09 21:05:50] NAME="CentOS Linux"
[2026-01-09 21:05:50] VERSION="7 (Core)"
[2026-01-09 21:05:50] ID="centos"
[2026-01-09 21:05:50] ID_LIKE="rhel fedora"
[2026-01-09 21:05:50] VERSION_ID="7"
[2026-01-09 21:05:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:05:50] ANSI_COLOR="0;31"
[2026-01-09 21:05:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:05:50] HOME_URL="https://www.centos.org/"
[2026-01-09 21:05:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:05:50] 
[2026-01-09 21:05:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:05:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:05:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:05:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:05:50] 
[2026-01-09 21:05:50] 2026-01-10 02:05:13,694 | INFO     | ***************************************
[2026-01-09 21:05:50] 2026-01-10 02:05:14,198 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 21:05:50] 2026-01-10 02:05:14,391 | INFO     | sufficient remaining disk space (52662632448 B)
[2026-01-09 21:05:50] 2026-01-10 02:05:14,391 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:05:50] 2026-01-10 02:05:14,392 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:05:50] 2026-01-10 02:05:14,392 | INFO     | update_server=False
[2026-01-09 21:05:50] 2026-01-10 02:05:14,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:05:50] 2026-01-10 02:05:14,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:05:50] 2026-01-10 02:05:14,407 | INFO     | aborting loop
[2026-01-09 21:05:50] 2026-01-10 02:05:14,874 | INFO     | all payload control threads have been joined
[2026-01-09 21:05:50] 2026-01-10 02:05:14,971 | INFO     | all data control threads have been joined
[2026-01-09 21:05:50] 2026-01-10 02:05:15,157 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:05:50] 2026-01-10 02:05:15,398 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:15,413 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:15,481 | INFO     | all job control threads have been joined
[2026-01-09 21:05:50] 2026-01-10 02:05:15,482 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:15,634 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:15,668 | INFO     | [job] validate thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:15,681 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:15,879 | INFO     | [payload] control thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:15,977 | INFO     | [data] control thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:16,069 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:16,161 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:16,343 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:16,487 | INFO     | [job] control thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:16,501 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:16,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:05:50] 2026-01-10 02:05:17,169 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:17,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:05:50] 2026-01-10 02:05:17,912 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:21,765 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:05:50] 2026-01-10 02:05:41,958 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:05:50] 2026-01-10 02:05:43,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139751277942592)>', '<ExcThread(monitor, started 139750895765248)>']
[2026-01-09 21:05:50] 2026-01-10 02:05:44,538 | INFO     | PID=42497 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 21:05:50] 2026-01-10 02:05:44,538 | INFO     | .. there are 7 such processes running
[2026-01-09 21:05:50] 2026-01-10 02:05:44,538 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:05:50] 2026-01-10 02:05:44,539 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:05:50] 2026-01-10 02:05:44,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:05:50] 2026-01-10 02:05:44,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:05:50] 2026-01-10 02:05:44,539 | INFO     | [monitor] control thread has ended
[2026-01-09 21:05:50] 2026-01-10 02:05:48,679 | INFO     | all workflow threads have been joined
[2026-01-09 21:05:50] 2026-01-10 02:05:48,679 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:05:50] 2026-01-10 02:05:48,679 | INFO     | traces error code: 0
[2026-01-09 21:05:50] 2026-01-10 02:05:48,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:05:50] 2026-01-10 02:05:49,560 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:05:50] 2026-01-10 02:05:49,594 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:05:50] 2026-01-10 02:05:49,635 [wrapper] pilotpid: 42497
[2026-01-09 21:05:50] 2026-01-10 02:05:49,698 [wrapper] Pilot exit status: 0
[2026-01-09 21:05:50] 2026-01-10 02:05:49,838 [wrapper] pandaids: 6963163275
[2026-01-09 21:05:50] 2026-01-10 02:05:49,895 [wrapper] cleanup supervisor_pilot  837041 42498
[2026-01-09 21:05:50] 2026-01-10 02:05:49,898 [wrapper] Test setup, not cleaning
[2026-01-09 21:05:50] 2026-01-10 02:05:49,908 [wrapper] apfmon messages muted
[2026-01-09 21:05:50] 2026-01-10 02:05:49,974 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:05:50] 2026-01-10 02:05:50,009 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:05:50]  *** Error codes and diagnostics ***
[2026-01-09 21:05:50]     "exeErrorCode": 0,
[2026-01-09 21:05:50]     "exeErrorDiag": "",
[2026-01-09 21:05:50]     "pilotErrorCode": 0,
[2026-01-09 21:05:50]     "pilotErrorDiag": "",
[2026-01-09 21:05:50]  *** Listing of results directory ***
[2026-01-09 21:05:50] total 448184
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 21:05:50] -rwx------. 1 boincer umatlas     36322 Jan  8 19:58 runpilot2-wrapper.sh
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:02 queuedata.json
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas       100 Jan  9 11:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:05:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 11:52 run_atlas
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas       105 Jan  9 11:52 job.xml
[2026-01-09 21:05:50] -rw-r--r--. 2 boincer umatlas 227147062 Jan  9 11:52 EVNT.47898824._001316.pool.root.1
[2026-01-09 21:05:50] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:52 start_atlas.sh
[2026-01-09 21:05:50] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 11:52 shared
[2026-01-09 21:05:50] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 11:52 input.tar.gz
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas         0 Jan  9 11:52 boinc_lockfile
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 11:52 pandaJob.out
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas        57 Jan  9 11:52 setup.sh.local
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas    989356 Jan  9 11:52 agis_schedconf.cvmfs.json
[2026-01-09 21:05:50] drwx------. 5 boincer umatlas      4096 Jan  9 11:52 pilot3
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas      6660 Jan  9 21:03 init_data.xml
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas 218248952 Jan  9 21:04 HITS.47898826._034502.pool.root.1
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas       531 Jan  9 21:04 boinc_task_state.xml
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas      1037 Jan  9 21:04 memory_monitor_summary.json
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas   1516240 Jan  9 21:05 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas    683759 Jan  9 21:05 log.47898826._034502.job.log.tgz.1
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas      7816 Jan  9 21:05 heartbeat.json
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas        95 Jan  9 21:05 pilot_heartbeat.json
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:05 boinc_mmap_file
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas        28 Jan  9 21:05 wrapper_checkpoint.txt
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas      4821 Jan  9 21:05 pilotlog.txt
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas   4133065 Jan  9 21:05 log.47898826._034502.job.log.1
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas       357 Jan  9 21:05 output.list
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:05 runtime_log
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas   4833280 Jan  9 21:05 result.tar.gz
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 21:05 runtime_log.err
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas       658 Jan  9 21:05 rLBNDmA1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYigKDmmdm9Un.diag
[2026-01-09 21:05:50] -rw-r--r--. 1 boincer umatlas     21393 Jan  9 21:05 stderr.txt
[2026-01-09 21:05:50] HITS file was successfully produced:
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas 218248952 Jan  9 21:04 shared/HITS.pool.root.1
[2026-01-09 21:05:50]  *** Contents of shared directory: ***
[2026-01-09 21:05:50] total 440280
[2026-01-09 21:05:50] -rw-r--r--. 2 boincer umatlas 227147062 Jan  9 11:52 ATLAS.root_0
[2026-01-09 21:05:50] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:52 start_atlas.sh
[2026-01-09 21:05:50] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 11:52 input.tar.gz
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas 218248952 Jan  9 21:04 HITS.pool.root.1
[2026-01-09 21:05:50] -rw-------. 1 boincer umatlas   4833280 Jan  9 21:05 result.tar.gz
21:05:52 (38825): run_atlas exited; CPU time 70793.207898
21:05:52 (38825): called boinc_finish(0)

</stderr_txt>
]]>

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