Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:55:24 (23743): wrapper (7.7.26015): starting
21:55:24 (23743): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 21:55:24] Arguments: --nthreads 8
[2026-01-09 21:55:24] Threads: 8
[2026-01-09 21:55:24] Checking for CVMFS
[2026-01-09 21:55:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 21:55:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 21:55:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 21:55:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 21:55:24] 2.11.2.0 1091 35921 95372 154956 3 57 19936390 25165824 0 130560 0 18020536 99.834 9681044 3447 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 21:55:24] CVMFS is ok
[2026-01-09 21:55:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 21:55:24] Checking for apptainer binary...
[2026-01-09 21:55:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 21:55:24] Running /usr/bin/apptainer --version
[2026-01-09 21:55:24] apptainer version 1.3.2-1.el7
[2026-01-09 21:55:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 21:55:26] cg-vwn498.simple-grid.lan
[2026-01-09 21:55:26] apptainer works
[2026-01-09 21:55:26] Set ATHENA_PROC_NUMBER=8
[2026-01-09 21:55:26] Set ATHENA_CORE_NUMBER=8
[2026-01-09 21:55:26] Starting ATLAS job with PandaID=6963381549
[2026-01-09 21:55:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 21:27:14]  *** The last 200 lines of the pilot log: ***
[2026-01-10 21:27:14] 2026-01-10 20:26:26,412 | INFO     | monitor loop #5640: job 0:6963381549 is in state 'finished'
[2026-01-10 21:27:14] 2026-01-10 20:26:26,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 21:27:14] 2026-01-10 20:26:26,800 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 21:27:14] 2026-01-10 20:26:26,801 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-10 21:27:14] 2026-01-10 20:26:26,803 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6963381549/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 21:27:14] 2026-01-10 20:26:26,804 | INFO     | extracted standard info from prmon json
[2026-01-10 21:27:14] 2026-01-10 20:26:26,804 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 21:27:14] 2026-01-10 20:26:26,804 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 21:27:14] 2026-01-10 20:26:26,829 | INFO     | fitting pss+swap vs Time
[2026-01-10 21:27:14] 2026-01-10 20:26:26,831 | INFO     | sum of square deviations: 827383810929.4382
[2026-01-10 21:27:14] 2026-01-10 20:26:26,884 | INFO     | sum of deviations: 3119476417949.8394
[2026-01-10 21:27:14] 2026-01-10 20:26:26,885 | INFO     | mean x: 1768034450.0201874
[2026-01-10 21:27:14] 2026-01-10 20:26:26,885 | INFO     | mean y: 2852895.541456381
[2026-01-10 21:27:14] 2026-01-10 20:26:26,885 | INFO     | intersect: -6663148662.750156
[2026-01-10 21:27:14] 2026-01-10 20:26:26,887 | INFO     | chi2: 5.882284952964335
[2026-01-10 21:27:14] 2026-01-10 20:26:26,889 | INFO     | sum of square deviations: 818468531146.713
[2026-01-10 21:27:14] 2026-01-10 20:26:26,939 | INFO     | sum of deviations: 3533871893094.248
[2026-01-10 21:27:14] 2026-01-10 20:26:26,940 | INFO     | mean x: 1768034297.5238783
[2026-01-10 21:27:14] 2026-01-10 20:26:26,940 | INFO     | mean y: 2859982.3408104195
[2026-01-10 21:27:14] 2026-01-10 20:26:26,940 | INFO     | intersect: -7630917581.828351
[2026-01-10 21:27:14] 2026-01-10 20:26:26,941 | INFO     | chi2: 3.262255469238593
[2026-01-10 21:27:14] 2026-01-10 20:26:26,942 | INFO     | current chi2=3.262255469238593 (change=44.54101602822551 %)
[2026-01-10 21:27:14] 2026-01-10 20:26:26,943 | INFO     | sum of square deviations: 809617531638.9518
[2026-01-10 21:27:14] 2026-01-10 20:26:26,994 | INFO     | sum of deviations: 3702453287899.726
[2026-01-10 21:27:14] 2026-01-10 20:26:26,995 | INFO     | mean x: 1768034145.0275962
[2026-01-10 21:27:14] 2026-01-10 20:26:26,995 | INFO     | mean y: 2862884.7966594044
[2026-01-10 21:27:14] 2026-01-10 20:26:26,995 | INFO     | intersect: -8082515182.70252
[2026-01-10 21:27:14] 2026-01-10 20:26:26,996 | INFO     | chi2: 2.6947961657523383
[2026-01-10 21:27:14] 2026-01-10 20:26:26,997 | INFO     | current chi2=2.6947961657523383 (change=17.39469237884975 %)
[2026-01-10 21:27:14] 2026-01-10 20:26:26,997 | INFO     | right removable region: 1376
[2026-01-10 21:27:14] 2026-01-10 20:26:26,999 | INFO     | sum of square deviations: 818467667996.7128
[2026-01-10 21:27:14] 2026-01-10 20:26:27,050 | INFO     | sum of deviations: 2705249841370.8716
[2026-01-10 21:27:14] 2026-01-10 20:26:27,051 | INFO     | mean x: 1768034602.5238783
[2026-01-10 21:27:14] 2026-01-10 20:26:27,051 | INFO     | mean y: 2859976.867583213
[2026-01-10 21:27:14] 2026-01-10 20:26:27,051 | INFO     | intersect: -5840957091.340838
[2026-01-10 21:27:14] 2026-01-10 20:26:27,053 | INFO     | chi2: 3.4690648654525247
[2026-01-10 21:27:14] 2026-01-10 20:26:27,053 | INFO     | current chi2=3.4690648654525247 (change=41.02521565698183 %)
[2026-01-10 21:27:14] 2026-01-10 20:26:27,055 | INFO     | sum of square deviations: 809615805338.9514
[2026-01-10 21:27:14] 2026-01-10 20:26:27,106 | INFO     | sum of deviations: 2625225384461.231
[2026-01-10 21:27:14] 2026-01-10 20:26:27,106 | INFO     | mean x: 1768034755.0275962
[2026-01-10 21:27:14] 2026-01-10 20:26:27,107 | INFO     | mean y: 2861355.177923021
[2026-01-10 21:27:14] 2026-01-10 20:26:27,107 | INFO     | intersect: -5730092088.789178
[2026-01-10 21:27:14] 2026-01-10 20:26:27,108 | INFO     | chi2: 3.432157868804853
[2026-01-10 21:27:14] 2026-01-10 20:26:27,109 | INFO     | current chi2=3.432157868804853 (change=1.063888917593279 %)
[2026-01-10 21:27:14] 2026-01-10 20:26:27,109 | INFO     | left removable region: 20
[2026-01-10 21:27:14] 2026-01-10 20:26:27,110 | INFO     | sum of square deviations: 773136740260.769
[2026-01-10 21:27:14] 2026-01-10 20:26:27,159 | INFO     | sum of deviations: 3127477039128.3574
[2026-01-10 21:27:14] 2026-01-10 20:26:27,159 | INFO     | mean x: 1768034724.5405605
[2026-01-10 21:27:14] 2026-01-10 20:26:27,159 | INFO     | mean y: 2873238.4387905607
[2026-01-10 21:27:14] 2026-01-10 20:26:27,159 | INFO     | intersect: -7149144920.104817
[2026-01-10 21:27:14] 2026-01-10 20:26:27,161 | INFO     | chi2: 0.20961258045637016
[2026-01-10 21:27:14] 2026-01-10 20:26:27,161 | INFO     | current memory leak: 4.05 B/s (using 1356 data points, chi2=0.21)
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | could have reported an average CPU frequency of 2249 MHz (46 samples)
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | ..............................
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | . Timing measurements:
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | . get job = 0 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | . initial setup = 2 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | . payload setup = 9 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | . stage-in = 0 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,164 | INFO     | . payload execution = 84604 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,165 | INFO     | . stage-out = 2 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,165 | INFO     | . log creation = 0 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,165 | INFO     | ..............................
[2026-01-10 21:27:14] 2026-01-10 20:26:27,397 | INFO     | 
[2026-01-10 21:27:14] 2026-01-10 20:26:27,397 | INFO     | job summary report
[2026-01-10 21:27:14] 2026-01-10 20:26:27,397 | INFO     | --------------------------------------------------
[2026-01-10 21:27:14] 2026-01-10 20:26:27,397 | INFO     | PanDA job id: 6963381549
[2026-01-10 21:27:14] 2026-01-10 20:26:27,397 | INFO     | task id: 47962010
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | errors: (none)
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | pilot state: finished 
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | transexitcode: 0
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | exeerrorcode: 0
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | exeerrordiag: 
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | exitcode: 0
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | exitmsg: OK
[2026-01-10 21:27:14] 2026-01-10 20:26:27,398 | INFO     | cpuconsumptiontime: 334519 s
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | nevents: 900
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | neventsw: 0
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | pid: 1556
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | pgrp: 1556
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | corecount: 8
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | event service: False
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | sizes: {0: 2284624, 1: 2284624, 5: 2284914, 11: 2284970, 84617: 2345493, 84620: 2354487, 84623: 2354671, 84630: 2354917}
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | --------------------------------------------------
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | 
[2026-01-10 21:27:14] 2026-01-10 20:26:27,399 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-10 21:27:14] 2026-01-10 20:26:27,424 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 21:27:14] 2026-01-10 20:26:27,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,427 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 21:27:14] 2026-01-10 20:26:27,427 | INFO     | job 6963381549 has completed (purged errors)
[2026-01-10 21:27:14] 2026-01-10 20:26:27,427 | INFO     | overall cleanup function is called
[2026-01-10 21:27:14] 2026-01-10 20:26:28,443 | INFO     | --- collectZombieJob: --- 10, [1556]
[2026-01-10 21:27:14] 2026-01-10 20:26:28,443 | INFO     | zombie collector waiting for pid 1556
[2026-01-10 21:27:14] 2026-01-10 20:26:28,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 21:27:14] 2026-01-10 20:26:28,444 | INFO     | collected zombie processes
[2026-01-10 21:27:14] 2026-01-10 20:26:28,444 | INFO     | will attempt to kill all subprocesses of pid=1556
[2026-01-10 21:27:14] 2026-01-10 20:26:28,509 | INFO     | process IDs to be killed: [1556] (in reverse order)
[2026-01-10 21:27:14] 2026-01-10 20:26:28,574 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 21:27:14] 2026-01-10 20:26:28,574 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 21:27:14] 2026-01-10 20:26:28,576 | INFO     | did not find any defunct processes belonging to 1556
[2026-01-10 21:27:14] 2026-01-10 20:26:28,578 | INFO     | did not find any defunct processes belonging to 1556
[2026-01-10 21:27:14] 2026-01-10 20:26:28,578 | INFO     | ready for new job
[2026-01-10 21:27:14] 2026-01-10 20:26:28,578 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 21:27:14] 2026-01-10 20:26:28,583 | INFO     | ***************************************
[2026-01-10 21:27:14] 2026-01-10 20:26:28,583 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 21:27:14] 2026-01-10 20:26:28,584 | INFO     | ***************************************
[2026-01-10 21:27:14] 2026-01-10 20:26:28,584 | INFO     | 
[2026-01-10 21:27:14] 2026-01-10 20:26:28,584 | INFO     | pilot is running in a VM
[2026-01-10 21:27:14] 2026-01-10 20:26:28,584 | INFO     | architecture information:
[2026-01-10 21:27:14] 2026-01-10 20:26:28,585 | INFO     | executing command: cat /etc/os-release
[2026-01-10 21:27:14] 2026-01-10 20:26:28,610 | INFO     | cat /etc/os-release:
[2026-01-10 21:27:14] NAME="CentOS Linux"
[2026-01-10 21:27:14] VERSION="7 (Core)"
[2026-01-10 21:27:14] ID="centos"
[2026-01-10 21:27:14] ID_LIKE="rhel fedora"
[2026-01-10 21:27:14] VERSION_ID="7"
[2026-01-10 21:27:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 21:27:14] ANSI_COLOR="0;31"
[2026-01-10 21:27:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 21:27:14] HOME_URL="https://www.centos.org/"
[2026-01-10 21:27:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 21:27:14] 
[2026-01-10 21:27:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 21:27:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 21:27:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 21:27:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 21:27:14] 
[2026-01-10 21:27:14] 2026-01-10 20:26:28,610 | INFO     | ***************************************
[2026-01-10 21:27:14] 2026-01-10 20:26:29,113 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-10 21:27:14] 2026-01-10 20:26:29,144 | INFO     | sufficient remaining disk space (497104715776 B)
[2026-01-10 21:27:14] 2026-01-10 20:26:29,145 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 21:27:14] 2026-01-10 20:26:29,145 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 21:27:14] 2026-01-10 20:26:29,145 | INFO     | update_server=False
[2026-01-10 21:27:14] 2026-01-10 20:26:29,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 21:27:14] 2026-01-10 20:26:29,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:27:14] 2026-01-10 20:26:29,182 | INFO     | all data control threads have been joined
[2026-01-10 21:27:14] 2026-01-10 20:26:29,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:27:14] 2026-01-10 20:26:29,921 | INFO     | aborting loop
[2026-01-10 21:27:14] 2026-01-10 20:26:30,087 | INFO     | all job control threads have been joined
[2026-01-10 21:27:14] 2026-01-10 20:26:30,151 | INFO     | [job] retrieve thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:30,151 | INFO     | [job] queue monitor thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:30,162 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:30,188 | INFO     | [data] control thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:30,288 | INFO     | [payload] failed_post thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:30,312 | INFO     | [job] validate thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:30,379 | INFO     | all payload control threads have been joined
[2026-01-10 21:27:14] 2026-01-10 20:26:30,500 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:30,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 21:27:14] 2026-01-10 20:26:30,894 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 21:27:14] 2026-01-10 20:26:30,927 | INFO     | [job] job monitor thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:31,093 | INFO     | [job] control thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:31,264 | INFO     | [data] copytool_in thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:31,265 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:31,272 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:31,385 | INFO     | [payload] control thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:31,719 | INFO     | [payload] validate_post thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:32,569 | INFO     | [data] copytool_out thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:34,901 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 21:27:14] 2026-01-10 20:26:58,700 | INFO     | PID=27469 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 21:27:14] 2026-01-10 20:26:58,700 | INFO     | .. there are 2 such processes running
[2026-01-10 21:27:14] 2026-01-10 20:26:58,700 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 21:27:14] 2026-01-10 20:26:58,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 21:27:14] 2026-01-10 20:26:58,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 21:27:14] 2026-01-10 20:26:59,925 [wrapper] supervise_pilot (15 min periods counter: 95)
[2026-01-10 21:27:14] 2026-01-10 20:27:08,840 | INFO     | [monitor] cgroup control has ended
[2026-01-10 21:27:14] 2026-01-10 20:27:09,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140330548909888)>', '<ExcThread(monitor, started 140329726502656)>']
[2026-01-10 21:27:14] 2026-01-10 20:27:09,759 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 21:27:14] 2026-01-10 20:27:09,760 | INFO     | [monitor] control thread has ended
[2026-01-10 21:27:14] 2026-01-10 20:27:14,104 | INFO     | all workflow threads have been joined
[2026-01-10 21:27:14] 2026-01-10 20:27:14,105 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 21:27:14] 2026-01-10 20:27:14,105 | INFO     | traces error code: 0
[2026-01-10 21:27:14] 2026-01-10 20:27:14,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 21:27:14] 2026-01-10 20:27:14,235 [wrapper] ==== pilot stdout END ====
[2026-01-10 21:27:14] 2026-01-10 20:27:14,240 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 21:27:14] 2026-01-10 20:27:14,245 [wrapper] pilotpid: 27469
[2026-01-10 21:27:14] 2026-01-10 20:27:14,251 [wrapper] Pilot exit status: 0
[2026-01-10 21:27:14] 2026-01-10 20:27:14,279 [wrapper] pandaids: 6963381549
[2026-01-10 21:27:14] 2026-01-10 20:27:14,346 [wrapper] cleanup supervisor_pilot 23488 27470
[2026-01-10 21:27:14] 2026-01-10 20:27:14,362 [wrapper] Test setup, not cleaning
[2026-01-10 21:27:14] 2026-01-10 20:27:14,369 [wrapper] apfmon messages muted
[2026-01-10 21:27:14] 2026-01-10 20:27:14,381 [wrapper] ==== wrapper stdout END ====
[2026-01-10 21:27:14] 2026-01-10 20:27:14,388 [wrapper] ==== wrapper stderr END ====
[2026-01-10 21:27:14]  *** Error codes and diagnostics ***
[2026-01-10 21:27:14]     "exeErrorCode": 0,
[2026-01-10 21:27:14]     "exeErrorDiag": "",
[2026-01-10 21:27:14]     "pilotErrorCode": 0,
[2026-01-10 21:27:14]     "pilotErrorDiag": "",
[2026-01-10 21:27:14]  *** Listing of results directory ***
[2026-01-10 21:27:14] total 1185264
[2026-01-10 21:27:14] -rwx------. 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:21 queuedata.json
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc       100 Jan  9 21:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 21:27:14] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 21:55 run_atlas
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc       105 Jan  9 21:55 job.xml
[2026-01-10 21:27:14] -rw-r--r--. 2 boinc boinc 391647796 Jan  9 21:55 EVNT.47962006._000113.pool.root.1
[2026-01-10 21:27:14] -rw-r--r--. 2 boinc boinc     15847 Jan  9 21:55 start_atlas.sh
[2026-01-10 21:27:14] drwxrwx--x. 2 boinc boinc        68 Jan  9 21:55 shared
[2026-01-10 21:27:14] -rw-r--r--. 2 boinc boinc    592617 Jan  9 21:55 input.tar.gz
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc      6390 Jan  9 21:55 init_data.xml
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc         0 Jan  9 21:55 boinc_lockfile
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc      2893 Jan  9 21:55 pandaJob.out
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc    989381 Jan  9 21:55 agis_schedconf.cvmfs.json
[2026-01-10 21:27:14] drwx------. 5 boinc boinc      4096 Jan  9 21:55 pilot3
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc       533 Jan 10 21:13 boinc_task_state.xml
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc 790753162 Jan 10 21:25 HITS.47962010._001659.pool.root.1
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc      1033 Jan 10 21:26 memory_monitor_summary.json
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc   1516240 Jan 10 21:26 agis_ddmendpoints.agis.ALL.json
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc   2433941 Jan 10 21:26 log.47962010._001659.job.log.tgz.1
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc        95 Jan 10 21:26 pilot_heartbeat.json
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc      8614 Jan 10 21:26 heartbeat.json
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc      8192 Jan 10 21:26 boinc_mmap_file
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc        29 Jan 10 21:26 wrapper_checkpoint.txt
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc      4884 Jan 10 21:27 pilotlog.txt
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc  11268427 Jan 10 21:27 log.47962010._001659.job.log.1
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc       353 Jan 10 21:27 output.list
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc       620 Jan 10 21:27 runtime_log
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc  13721600 Jan 10 21:27 result.tar.gz
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc      8817 Jan 10 21:27 runtime_log.err
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc       662 Jan 10 21:27 kkHLDmRvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmucmKDm8QGCfn.diag
[2026-01-10 21:27:14] -rw-r--r--. 1 boinc boinc     20821 Jan 10 21:27 stderr.txt
[2026-01-10 21:27:14] HITS file was successfully produced:
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc 790753162 Jan 10 21:25 shared/HITS.pool.root.1
[2026-01-10 21:27:14]  *** Contents of shared directory: ***
[2026-01-10 21:27:14] total 1168688
[2026-01-10 21:27:14] -rw-r--r--. 2 boinc boinc 391647796 Jan  9 21:55 ATLAS.root_0
[2026-01-10 21:27:14] -rw-r--r--. 2 boinc boinc     15847 Jan  9 21:55 start_atlas.sh
[2026-01-10 21:27:14] -rw-r--r--. 2 boinc boinc    592617 Jan  9 21:55 input.tar.gz
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc 790753162 Jan 10 21:25 HITS.pool.root.1
[2026-01-10 21:27:14] -rw-------. 1 boinc boinc  13721600 Jan 10 21:27 result.tar.gz
21:27:16 (23743): run_atlas exited; CPU time 334820.292524
21:27:16 (23743): called boinc_finish(0)

</stderr_txt>
]]>

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