Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:07:11 (1048412): wrapper (7.7.26015): starting
09:07:11 (1048412): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 09:07:11] Arguments: --nthreads 12
[2026-01-09 09:07:11] Threads: 12
[2026-01-09 09:07:11] Checking for CVMFS
[2026-01-09 09:07:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:07:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:07:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:07:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:07:12] 2.11.5.0 2104101 92004 173580 154950 2 486 39308668 45568001 11786 130560 0 803256216 99.787 521221383 23513 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-01-09 09:07:12] CVMFS is ok
[2026-01-09 09:07:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:07:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:07:12] Further information can be found at the LHC@home message board.
[2026-01-09 09:07:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:07:12] Checking for apptainer binary...
[2026-01-09 09:07:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:07:12] Running /usr/bin/apptainer --version
[2026-01-09 09:07:12] apptainer version 1.4.1-1.el9
[2026-01-09 09:07:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:07:12] wns0090.triumf.lcg
[2026-01-09 09:07:12] apptainer works
[2026-01-09 09:07:12] Set ATHENA_PROC_NUMBER=12
[2026-01-09 09:07:12] Set ATHENA_CORE_NUMBER=12
[2026-01-09 09:07:12] Starting ATLAS job with PandaID=6963383832
[2026-01-09 09:07:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:12:31]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:12:31] 2026-01-09 17:11:37,455 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:12:31] 2026-01-09 17:11:37,455 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:12:31] 2026-01-09 17:11:37,456 | WARNING  | wrong length of table data, x=[1767978480.0, 1767978541.0], y=[1508.0, 526184.0] (must be same and length>=4)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,456 | INFO     | could have reported an average CPU frequency of 2725 MHz (4 samples)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | ..............................
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . Timing measurements:
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . get job = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . initial setup = 3 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . payload setup = 9 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . stage-in = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . payload execution = 87 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | . stage-out = 1 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | . log creation = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | ..............................
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 09:12:31] 2026-01-09 17:11:37,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963383832/pilotlog.txt
[2026-01-09 09:12:31] 2026-01-09 17:11:37,527 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-09 09:12:31] - Log from pilotlog.txt -
[2026-01-09 09:12:31] 2026-01-09 17:11:37,433 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963383832/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,434 | INFO     | extracted standard info from prmon json
[2026-01-09 09:12:31] 2026-01-09 17:11:37,434 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:12:31] 2026-01-09 17:11:37,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:12:31] 2026-01-09 17:11:37,455 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:12:31] 2026-01-09 17:11:37,455 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:12:31] 2026-01-09 17:11:37,456 | WARNING  | wrong length of table data, x=[1767978480.0, 1767978541.0], y=[1508.0, 526184.0] (must be same and length>=4)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,456 | INFO     | could have reported an average CPU frequency of 2725 MHz (4 samples)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | ..............................
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . Timing measurements:
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . get job = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . initial setup = 3 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . payload setup = 9 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . stage-in = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . payload execution = 87 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | . stage-out = 1 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | . log creation = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | ..............................
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 09:12:31] 2026-01-09 17:11:37,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963383832/pilotlog.txt
[2026-01-09 09:12:31] 2026-01-09 17:11:37,528 | WARNING  | 
[2026-01-09 09:12:31] [begin log extracts]
[2026-01-09 09:12:31] - Log from pilotlog.txt -
[2026-01-09 09:12:31] 2026-01-09 17:11:37,433 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963383832/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,434 | INFO     | extracted standard info from prmon json
[2026-01-09 09:12:31] 2026-01-09 17:11:37,434 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:12:31] 2026-01-09 17:11:37,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:12:31] 2026-01-09 17:11:37,455 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:12:31] 2026-01-09 17:11:37,455 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:12:31] 2026-01-09 17:11:37,456 | WARNING  | wrong length of table data, x=[1767978480.0, 1767978541.0], y=[1508.0, 526184.0] (must be same and length>=4)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,456 | INFO     | could have reported an average CPU frequency of 2725 MHz (4 samples)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | ..............................
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . Timing measurements:
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . get job = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . initial setup = 3 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . payload setup = 9 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . stage-in = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,457 | INFO     | . payload execution = 87 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | . stage-out = 1 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | . log creation = 0 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | ..............................
[2026-01-09 09:12:31] 2026-01-09 17:11:37,465 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 09:12:31] 2026-01-09 17:11:37,466 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963383832/pilotlog.txt
[2026-01-09 09:12:31] [end log extracts]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,528 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,528 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-09 09:12:31] 2026-01-09 17:11:37,796 | INFO     | 
[2026-01-09 09:12:31] 2026-01-09 17:11:37,796 | INFO     | job summary report
[2026-01-09 09:12:31] 2026-01-09 17:11:37,796 | INFO     | --------------------------------------------------
[2026-01-09 09:12:31] 2026-01-09 17:11:37,796 | INFO     | PanDA job id: 6963383832
[2026-01-09 09:12:31] 2026-01-09 17:11:37,796 | INFO     | task id: 47962010
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-09 09:09:15,080 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | pilot state: failed 
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | transexitcode: 65
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | exeerrorcode: 65
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | exitcode: 65
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | cpuconsumptiontime: 42 s
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | nevents: 0
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | neventsw: 0
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | pid: 1059674
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | pgrp: 1059674
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | corecount: 12
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | event service: False
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | sizes: {0: 2284621, 6: 2284883, 11: 2284911, 101: 2310348, 104: 2314638, 108: 2314666, 236: 2314960}
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | --------------------------------------------------
[2026-01-09 09:12:31] 2026-01-09 17:11:37,797 | INFO     | 
[2026-01-09 09:12:31] 2026-01-09 17:11:37,798 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,832 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | job 6963383832 has completed (purged errors)
[2026-01-09 09:12:31] 2026-01-09 17:11:37,833 | INFO     | overall cleanup function is called
[2026-01-09 09:12:31] 2026-01-09 17:11:38,842 | INFO     | --- collectZombieJob: --- 10, [1059674]
[2026-01-09 09:12:31] 2026-01-09 17:11:38,842 | INFO     | zombie collector waiting for pid 1059674
[2026-01-09 09:12:31] 2026-01-09 17:11:38,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:12:31] 2026-01-09 17:11:38,843 | INFO     | collected zombie processes
[2026-01-09 09:12:31] 2026-01-09 17:11:38,843 | INFO     | will attempt to kill all subprocesses of pid=1059674
[2026-01-09 09:12:31] 2026-01-09 17:11:39,180 | INFO     | process IDs to be killed: [1059674] (in reverse order)
[2026-01-09 09:12:31] 2026-01-09 17:11:39,297 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:12:31] 2026-01-09 17:11:39,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:12:31] 2026-01-09 17:11:39,324 | INFO     | did not find any defunct processes belonging to 1059674
[2026-01-09 09:12:31] 2026-01-09 17:11:39,376 | INFO     | did not find any defunct processes belonging to 1059674
[2026-01-09 09:12:31] 2026-01-09 17:11:39,377 | INFO     | ready for new job
[2026-01-09 09:12:31] 2026-01-09 17:11:39,377 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:12:31] 2026-01-09 17:11:39,397 | INFO     | ***************************************
[2026-01-09 09:12:31] 2026-01-09 17:11:39,398 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:12:31] 2026-01-09 17:11:39,398 | INFO     | ***************************************
[2026-01-09 09:12:31] 2026-01-09 17:11:39,398 | INFO     | 
[2026-01-09 09:12:31] 2026-01-09 17:11:39,399 | INFO     | architecture information:
[2026-01-09 09:12:31] 2026-01-09 17:11:39,413 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:12:31] 2026-01-09 17:11:39,426 | INFO     | cat /etc/os-release:
[2026-01-09 09:12:31] NAME="CentOS Linux"
[2026-01-09 09:12:31] VERSION="7 (Core)"
[2026-01-09 09:12:31] ID="centos"
[2026-01-09 09:12:31] ID_LIKE="rhel fedora"
[2026-01-09 09:12:31] VERSION_ID="7"
[2026-01-09 09:12:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:12:31] ANSI_COLOR="0;31"
[2026-01-09 09:12:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:12:31] HOME_URL="https://www.centos.org/"
[2026-01-09 09:12:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:12:31] 
[2026-01-09 09:12:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:12:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:12:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:12:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:12:31] 
[2026-01-09 09:12:31] 2026-01-09 17:11:39,426 | INFO     | ***************************************
[2026-01-09 09:12:31] 2026-01-09 17:11:39,930 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-09 09:12:31] 2026-01-09 17:11:39,994 | INFO     | sufficient remaining disk space (2039345053696 B)
[2026-01-09 09:12:31] 2026-01-09 17:11:39,995 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:12:31] 2026-01-09 17:11:39,995 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:12:31] 2026-01-09 17:11:39,995 | INFO     | update_server=False
[2026-01-09 09:12:31] 2026-01-09 17:11:39,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:12:31] 2026-01-09 17:11:40,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:12:31] 2026-01-09 17:11:40,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:12:31] 2026-01-09 17:11:40,021 | INFO     | aborting loop
[2026-01-09 09:12:31] 2026-01-09 17:11:40,329 | INFO     | all data control threads have been joined
[2026-01-09 09:12:31] 2026-01-09 17:11:41,000 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,026 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,085 | INFO     | all job control threads have been joined
[2026-01-09 09:12:31] 2026-01-09 17:11:41,129 | INFO     | all payload control threads have been joined
[2026-01-09 09:12:31] 2026-01-09 17:11:41,335 | INFO     | [data] control thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,357 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,444 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,446 | INFO     | [job] validate thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,788 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,854 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:41,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:12:31] 2026-01-09 17:11:42,027 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:42,033 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:42,091 | INFO     | [job] control thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:42,117 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:42,135 | INFO     | [payload] control thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:42,440 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:42,812 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:12:31] 2026-01-09 17:11:43,820 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:11:45,983 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:12:31] 2026-01-09 17:12:10,344 | INFO     | PID=1052906 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 09:12:31] 2026-01-09 17:12:10,345 | INFO     | .. there are 21 such processes running
[2026-01-09 09:12:31] 2026-01-09 17:12:10,345 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:12:31] 2026-01-09 17:12:10,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:12:31] 2026-01-09 17:12:10,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:12:31] 2026-01-09 17:12:25,499 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:12:31] 2026-01-09 17:12:25,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654237382464)>', '<ExcThread(monitor, started 139653831169792)>']
[2026-01-09 09:12:31] 2026-01-09 17:12:26,436 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:12:31] 2026-01-09 17:12:26,436 | INFO     | [monitor] control thread has ended
[2026-01-09 09:12:31] 2026-01-09 17:12:30,779 | INFO     | all workflow threads have been joined
[2026-01-09 09:12:31] 2026-01-09 17:12:30,779 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:12:31] 2026-01-09 17:12:30,780 | INFO     | traces error code: 0
[2026-01-09 09:12:31] 2026-01-09 17:12:30,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:12:31] 2026-01-09 17:12:31,170 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:12:31] 2026-01-09 17:12:31,173 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:12:31] 2026-01-09 17:12:31,176 [wrapper] pilotpid: 1052906
[2026-01-09 09:12:31] 2026-01-09 17:12:31,179 [wrapper] Pilot exit status: 0
[2026-01-09 09:12:31] 2026-01-09 17:12:31,207 [wrapper] pandaids: 6963383832
[2026-01-09 09:12:31] 2026-01-09 17:12:31,259 [wrapper] cleanup supervisor_pilot 1052914 1052907
[2026-01-09 09:12:31] 2026-01-09 17:12:31,262 [wrapper] Test setup, not cleaning
[2026-01-09 09:12:31] 2026-01-09 17:12:31,264 [wrapper] apfmon messages muted
[2026-01-09 09:12:31] 2026-01-09 17:12:31,265 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:12:31] 2026-01-09 17:12:31,267 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:12:31]  *** Error codes and diagnostics ***
[2026-01-09 09:12:31]     "exeErrorCode": 65,
[2026-01-09 09:12:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2026-01-09 09:12:31]     "pilotErrorCode": 1305,
[2026-01-09 09:12:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2026-01-09 09:12:31]  *** Listing of results directory ***
[2026-01-09 09:12:31] total 388204
[2026-01-09 09:12:31] -rwx------. 1 boinc boinc     36322 Jan  8 23:17 runpilot2-wrapper.sh
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc    579449 Jan  8 23:20 pilot3.tar.gz
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc      5112 Jan  8 23:21 queuedata.json
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc       100 Jan  9 09:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:12:31] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 09:07 run_atlas
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc       105 Jan  9 09:07 job.xml
[2026-01-09 09:12:31] -rw-r--r--. 2 boinc boinc 393319043 Jan  9 09:07 EVNT.47962006._000127.pool.root.1
[2026-01-09 09:12:31] drwxrwx--x. 2 boinc boinc      4096 Jan  9 09:07 shared
[2026-01-09 09:12:31] -rw-r--r--. 2 boinc boinc    592613 Jan  9 09:07 input.tar.gz
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc      6595 Jan  9 09:07 init_data.xml
[2026-01-09 09:12:31] -rw-r--r--. 2 boinc boinc     15847 Jan  9 09:07 start_atlas.sh
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc         0 Jan  9 09:07 boinc_lockfile
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc      2893 Jan  9 09:07 pandaJob.out
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc    989356 Jan  9 09:07 agis_schedconf.cvmfs.json
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc   1516240 Jan  9 09:07 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:12:31] drwx------. 5 boinc boinc      4096 Jan  9 09:07 pilot3
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc       523 Jan  9 09:08 boinc_task_state.xml
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc      1015 Jan  9 09:09 memory_monitor_summary.json
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc     48586 Jan  9 09:09 log.47962010._001820.job.log.tgz.1
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc        95 Jan  9 09:11 pilot_heartbeat.json
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc     10335 Jan  9 09:11 heartbeat.json
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc        23 Jan  9 09:12 wrapper_checkpoint.txt
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc      8192 Jan  9 09:12 boinc_mmap_file
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc      4823 Jan  9 09:12 pilotlog.txt
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc     96081 Jan  9 09:12 log.47962010._001820.job.log.1
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc       186 Jan  9 09:12 output.list
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc       620 Jan  9 09:12 runtime_log
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc    163840 Jan  9 09:12 result.tar.gz
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc       644 Jan  9 09:12 SRkKDmcvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoRhKDmBfhqgm.diag
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc      8636 Jan  9 09:12 runtime_log.err
[2026-01-09 09:12:31] -rw-r--r--. 1 boinc boinc     22347 Jan  9 09:12 stderr.txt
[2026-01-09 09:12:31] No HITS result produced
[2026-01-09 09:12:31]  *** Contents of shared directory: ***
[2026-01-09 09:12:31] total 384864
[2026-01-09 09:12:31] -rw-r--r--. 2 boinc boinc 393319043 Jan  9 09:07 ATLAS.root_0
[2026-01-09 09:12:31] -rw-r--r--. 2 boinc boinc    592613 Jan  9 09:07 input.tar.gz
[2026-01-09 09:12:31] -rw-r--r--. 2 boinc boinc     15847 Jan  9 09:07 start_atlas.sh
[2026-01-09 09:12:31] -rw-------. 1 boinc boinc    163840 Jan  9 09:12 result.tar.gz
09:12:33 (1048412): run_atlas exited; CPU time 42.670201
09:12:33 (1048412): called boinc_finish(0)

</stderr_txt>
]]>

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