Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:49:12 (2040973): wrapper (7.7.26015): starting
11:49:12 (2040973): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 11:49:12] Arguments: --nthreads 8
[2026-01-09 11:49:12] Threads: 8
[2026-01-09 11:49:12] Checking for CVMFS
[2026-01-09 11:49:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:49:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:49:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:49:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:49:14] 2.13.3.0 10749 49985 501172 154950 1 506 22310158 32935937 53714 16776704 0 524465781 99.784 283137086 29012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 11:49:14] CVMFS is ok
[2026-01-09 11:49:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:49:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:49:14] Further information can be found at the LHC@home message board.
[2026-01-09 11:49:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:49:14] Checking for apptainer binary...
[2026-01-09 11:49:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:49:14] Running /usr/bin/apptainer --version
[2026-01-09 11:49:14] apptainer version 1.4.5-2.el9
[2026-01-09 11:49:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:49:15] lc-12-33.aglt2.org
[2026-01-09 11:49:15] apptainer works
[2026-01-09 11:49:15] Set ATHENA_PROC_NUMBER=8
[2026-01-09 11:49:15] Set ATHENA_CORE_NUMBER=8
[2026-01-09 11:49:15] Starting ATLAS job with PandaID=6963379701
[2026-01-09 11:49:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:20:13 (2040973): BOINC client no longer exists - exiting
15:20:13 (2040973): timer handler: client dead, exiting
15:28:46 (623412): wrapper (7.7.26015): starting
15:28:46 (623412): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:28:46] Arguments: --nthreads 8
[2026-01-09 15:28:46] Threads: 8
[2026-01-09 15:28:46] This job has been restarted, cleaning up previous attempt
[2026-01-09 15:28:47] Checking for CVMFS
[2026-01-09 15:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:28:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:28:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:28:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:28:49] 2.13.3.0 10749 50205 496736 154956 2 341 25759242 32935937 53860 16776704 0 527086645 99.784 284145527 29012 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:28:49] CVMFS is ok
[2026-01-09 15:28:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:28:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:28:49] Further information can be found at the LHC@home message board.
[2026-01-09 15:28:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:28:49] Checking for apptainer binary...
[2026-01-09 15:28:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:28:49] Running /usr/bin/apptainer --version
[2026-01-09 15:28:49] apptainer version 1.4.5-2.el9
[2026-01-09 15:28:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:28:50] lc-12-33.aglt2.org
[2026-01-09 15:28:50] apptainer works
[2026-01-09 15:28:50] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:28:50] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:28:51] Starting ATLAS job with PandaID=6963379701
[2026-01-09 15:28:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:44:03]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:44:03] 2026-01-10 18:43:27,748 | INFO     | .. there are 65 such processes running
[2026-01-10 13:44:03] 2026-01-10 18:43:27,820 | INFO     | monitor loop #4136: job 0:6963379701 is in state 'finished'
[2026-01-10 13:44:03] 2026-01-10 18:43:27,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,033 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 13:44:03] 2026-01-10 18:43:28,040 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2940.481375
[2026-01-10 13:44:03] 2026-01-10 18:43:28,062 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6963379701/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,063 | INFO     | extracted standard info from prmon json
[2026-01-10 13:44:03] 2026-01-10 18:43:28,064 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:44:03] 2026-01-10 18:43:28,064 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:44:03] 2026-01-10 18:43:28,088 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:44:03] 2026-01-10 18:43:28,090 | INFO     | sum of square deviations: 698704830322.0936
[2026-01-10 13:44:03] 2026-01-10 18:43:28,143 | INFO     | sum of deviations: 4484805091139.555
[2026-01-10 13:44:03] 2026-01-10 18:43:28,143 | INFO     | mean x: 1768030612.9328756
[2026-01-10 13:44:03] 2026-01-10 18:43:28,143 | INFO     | mean y: 2938425.813119756
[2026-01-10 13:44:03] 2026-01-10 18:43:28,143 | INFO     | intersect: -11345591525.692524
[2026-01-10 13:44:03] 2026-01-10 18:43:28,145 | INFO     | chi2: 6.70045804588285
[2026-01-10 13:44:03] 2026-01-10 18:43:28,146 | INFO     | sum of square deviations: 690741853855.8407
[2026-01-10 13:44:03] 2026-01-10 18:43:28,187 | INFO     | sum of deviations: 4949865899560.277
[2026-01-10 13:44:03] 2026-01-10 18:43:28,187 | INFO     | mean x: 1768030460.4402757
[2026-01-10 13:44:03] 2026-01-10 18:43:28,187 | INFO     | mean y: 2947332.0290964777
[2026-01-10 13:44:03] 2026-01-10 18:43:28,187 | INFO     | intersect: -12666783967.246763
[2026-01-10 13:44:03] 2026-01-10 18:43:28,189 | INFO     | chi2: 3.3490284036542213
[2026-01-10 13:44:03] 2026-01-10 18:43:28,189 | INFO     | current chi2=3.3490284036542213 (change=50.017918465856845 %)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,190 | INFO     | sum of square deviations: 682839384091.1252
[2026-01-10 13:44:03] 2026-01-10 18:43:28,234 | INFO     | sum of deviations: 5100956951395.699
[2026-01-10 13:44:03] 2026-01-10 18:43:28,234 | INFO     | mean x: 1768030307.9454267
[2026-01-10 13:44:03] 2026-01-10 18:43:28,234 | INFO     | mean y: 2950243.1929285163
[2026-01-10 13:44:03] 2026-01-10 18:43:28,234 | INFO     | intersect: -13204616132.89788
[2026-01-10 13:44:03] 2026-01-10 18:43:28,240 | INFO     | chi2: 2.682148727456629
[2026-01-10 13:44:03] 2026-01-10 18:43:28,240 | INFO     | current chi2=2.682148727456629 (change=19.912631241644316 %)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,240 | INFO     | right removable region: 1300
[2026-01-10 13:44:03] 2026-01-10 18:43:28,242 | INFO     | sum of square deviations: 690740308115.8412
[2026-01-10 13:44:03] 2026-01-10 18:43:28,311 | INFO     | sum of deviations: 4071808616261.819
[2026-01-10 13:44:03] 2026-01-10 18:43:28,311 | INFO     | mean x: 1768030765.4402757
[2026-01-10 13:44:03] 2026-01-10 18:43:28,311 | INFO     | mean y: 2946329.619448698
[2026-01-10 13:44:03] 2026-01-10 18:43:28,312 | INFO     | intersect: -10419324992.830095
[2026-01-10 13:44:03] 2026-01-10 18:43:28,317 | INFO     | chi2: 4.2296622448093615
[2026-01-10 13:44:03] 2026-01-10 18:43:28,317 | INFO     | current chi2=4.2296622448093615 (change=36.87502830633629 %)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,319 | INFO     | sum of square deviations: 682837247878.443
[2026-01-10 13:44:03] 2026-01-10 18:43:28,383 | INFO     | sum of deviations: 3987688265288.731
[2026-01-10 13:44:03] 2026-01-10 18:43:28,383 | INFO     | mean x: 1768030917.9408147
[2026-01-10 13:44:03] 2026-01-10 18:43:28,383 | INFO     | mean y: 2947952.5549577246
[2026-01-10 13:44:03] 2026-01-10 18:43:28,383 | INFO     | intersect: -10322142200.399523
[2026-01-10 13:44:03] 2026-01-10 18:43:28,384 | INFO     | chi2: 4.2087317828569395
[2026-01-10 13:44:03] 2026-01-10 18:43:28,385 | INFO     | current chi2=4.2087317828569395 (change=0.49484948776011217 %)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,385 | INFO     | left removable region: 20
[2026-01-10 13:44:03] 2026-01-10 18:43:28,386 | INFO     | sum of square deviations: 650303428528.1997
[2026-01-10 13:44:03] 2026-01-10 18:43:28,425 | INFO     | sum of deviations: 4486900415694.894
[2026-01-10 13:44:03] 2026-01-10 18:43:28,425 | INFO     | mean x: 1768030887.4625
[2026-01-10 13:44:03] 2026-01-10 18:43:28,425 | INFO     | mean y: 2962443.01875
[2026-01-10 13:44:03] 2026-01-10 18:43:28,425 | INFO     | intersect: -12195925300.61691
[2026-01-10 13:44:03] 2026-01-10 18:43:28,426 | INFO     | chi2: 0.1472152346497918
[2026-01-10 13:44:03] 2026-01-10 18:43:28,427 | INFO     | current memory leak: 6.90 B/s (using 1280 data points, chi2=0.15)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,428 | INFO     | could have reported an average CPU frequency of 2943 MHz (47 samples)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,428 | INFO     | ..............................
[2026-01-10 13:44:03] 2026-01-10 18:43:28,428 | INFO     | . Timing measurements:
[2026-01-10 13:44:03] 2026-01-10 18:43:28,428 | INFO     | . get job = 0 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,428 | INFO     | . initial setup = 3 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,428 | INFO     | . payload setup = 27 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,429 | INFO     | . stage-in = 0 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,429 | INFO     | . payload execution = 79949 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,429 | INFO     | . stage-out = 4 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,429 | INFO     | . log creation = 0 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,429 | INFO     | ..............................
[2026-01-10 13:44:03] 2026-01-10 18:43:28,751 | INFO     | time since job start (80044s) is within the limit (349056.0s)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,942 | INFO     | 
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | job summary report
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | --------------------------------------------------
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | PanDA job id: 6963379701
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | task id: 47962010
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | errors: (none)
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | pilot state: finished 
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | transexitcode: 0
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | exeerrorcode: 0
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | exeerrordiag: 
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | exitcode: 0
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | exitmsg: OK
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | cpuconsumptiontime: 275095 s
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | nevents: 900
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | neventsw: 0
[2026-01-10 13:44:03] 2026-01-10 18:43:28,943 | INFO     | pid: 715726
[2026-01-10 13:44:03] 2026-01-10 18:43:28,944 | INFO     | pgrp: 715726
[2026-01-10 13:44:03] 2026-01-10 18:43:28,944 | INFO     | corecount: 8
[2026-01-10 13:44:03] 2026-01-10 18:43:28,944 | INFO     | event service: False
[2026-01-10 13:44:03] 2026-01-10 18:43:28,944 | INFO     | sizes: {0: 2283794, 1: 2284479, 2: 2284678, 13: 2284678, 15: 2284996, 23: 2285024, 79981: 2345683, 79986: 2354677, 79988: 2354733, 80006: 2354979}
[2026-01-10 13:44:03] 2026-01-10 18:43:28,944 | INFO     | --------------------------------------------------
[2026-01-10 13:44:03] 2026-01-10 18:43:28,944 | INFO     | 
[2026-01-10 13:44:03] 2026-01-10 18:43:28,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-10 13:44:03] 2026-01-10 18:43:29,011 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:44:03] 2026-01-10 18:43:29,013 | INFO     | job 6963379701 has completed (purged errors)
[2026-01-10 13:44:03] 2026-01-10 18:43:29,014 | INFO     | overall cleanup function is called
[2026-01-10 13:44:03] 2026-01-10 18:43:30,036 | INFO     | --- collectZombieJob: --- 10, [715726]
[2026-01-10 13:44:03] 2026-01-10 18:43:30,036 | INFO     | zombie collector waiting for pid 715726
[2026-01-10 13:44:03] 2026-01-10 18:43:30,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:44:03] 2026-01-10 18:43:30,037 | INFO     | collected zombie processes
[2026-01-10 13:44:03] 2026-01-10 18:43:30,037 | INFO     | will attempt to kill all subprocesses of pid=715726
[2026-01-10 13:44:03] 2026-01-10 18:43:30,864 | INFO     | process IDs to be killed: [715726] (in reverse order)
[2026-01-10 13:44:03] 2026-01-10 18:43:31,168 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:44:03] 2026-01-10 18:43:31,168 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:44:03] 2026-01-10 18:43:31,195 | INFO     | did not find any defunct processes belonging to 715726
[2026-01-10 13:44:03] 2026-01-10 18:43:31,223 | INFO     | did not find any defunct processes belonging to 715726
[2026-01-10 13:44:03] 2026-01-10 18:43:31,223 | INFO     | ready for new job
[2026-01-10 13:44:03] 2026-01-10 18:43:31,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:44:03] 2026-01-10 18:43:31,229 | INFO     | ***************************************
[2026-01-10 13:44:03] 2026-01-10 18:43:31,229 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:44:03] 2026-01-10 18:43:31,229 | INFO     | ***************************************
[2026-01-10 13:44:03] 2026-01-10 18:43:31,229 | INFO     | 
[2026-01-10 13:44:03] 2026-01-10 18:43:31,234 | INFO     | architecture information:
[2026-01-10 13:44:03] 2026-01-10 18:43:31,235 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:44:03] 2026-01-10 18:43:31,265 | INFO     | cat /etc/os-release:
[2026-01-10 13:44:03] NAME="CentOS Linux"
[2026-01-10 13:44:03] VERSION="7 (Core)"
[2026-01-10 13:44:03] ID="centos"
[2026-01-10 13:44:03] ID_LIKE="rhel fedora"
[2026-01-10 13:44:03] VERSION_ID="7"
[2026-01-10 13:44:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:44:03] ANSI_COLOR="0;31"
[2026-01-10 13:44:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:44:03] HOME_URL="https://www.centos.org/"
[2026-01-10 13:44:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:44:03] 
[2026-01-10 13:44:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:44:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:44:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:44:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:44:03] 
[2026-01-10 13:44:03] 2026-01-10 18:43:31,266 | INFO     | ***************************************
[2026-01-10 13:44:03] 2026-01-10 18:43:31,769 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-10 13:44:03] 2026-01-10 18:43:31,810 | INFO     | sufficient remaining disk space (75559337984 B)
[2026-01-10 13:44:03] 2026-01-10 18:43:31,810 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:44:03] 2026-01-10 18:43:31,810 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:44:03] 2026-01-10 18:43:31,810 | INFO     | update_server=False
[2026-01-10 13:44:03] 2026-01-10 18:43:31,810 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:44:03] 2026-01-10 18:43:31,813 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:44:03] 2026-01-10 18:43:31,814 | INFO     | aborting loop
[2026-01-10 13:44:03] 2026-01-10 18:43:31,814 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:44:03] 2026-01-10 18:43:32,093 | INFO     | all payload control threads have been joined
[2026-01-10 13:44:03] 2026-01-10 18:43:32,667 | INFO     | all data control threads have been joined
[2026-01-10 13:44:03] 2026-01-10 18:43:32,817 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:32,819 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:32,974 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:33,099 | INFO     | [payload] control thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:33,233 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:33,379 | INFO     | all job control threads have been joined
[2026-01-10 13:44:03] 2026-01-10 18:43:33,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:44:03] 2026-01-10 18:43:33,627 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:33,661 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:33,672 | INFO     | [data] control thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:33,821 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:33,971 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:34,193 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:34,217 | INFO     | [job] validate thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:34,321 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:34,387 | INFO     | [job] control thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:34,552 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:34,842 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:44:03] 2026-01-10 18:43:38,851 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:44:03] 2026-01-10 18:43:51,602 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:44:03] 2026-01-10 18:43:51,666 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140496740677440)>', '<ExcThread(monitor, started 140496299095808)>']
[2026-01-10 13:44:03] 2026-01-10 18:43:56,692 | INFO     | all workflow threads have been joined
[2026-01-10 13:44:03] 2026-01-10 18:43:56,693 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:44:03] 2026-01-10 18:43:56,693 | INFO     | traces error code: 0
[2026-01-10 13:44:03] 2026-01-10 18:43:56,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:44:03] 2026-01-10 18:44:02,748 | INFO     | PID=654369 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 13:44:03] 2026-01-10 18:44:02,749 | INFO     | .. there are 65 such processes running
[2026-01-10 13:44:03] 2026-01-10 18:44:02,749 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:44:03] 2026-01-10 18:44:02,749 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:44:03] 2026-01-10 18:44:02,749 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:44:03] 2026-01-10 18:44:02,749 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:44:03] 2026-01-10 18:44:02,749 | INFO     | [monitor] control thread has ended
[2026-01-10 13:44:03] 2026-01-10 18:44:03,051 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:44:03] 2026-01-10 18:44:03,056 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:44:03] 2026-01-10 18:44:03,062 [wrapper] pilotpid: 654369
[2026-01-10 13:44:03] 2026-01-10 18:44:03,105 [wrapper] Pilot exit status: 0
[2026-01-10 13:44:03] 2026-01-10 18:44:03,190 [wrapper] pandaids: 6963379701 6963379701
[2026-01-10 13:44:03] 2026-01-10 18:44:03,401 [wrapper] cleanup supervisor_pilot  948741 654370
[2026-01-10 13:44:03] 2026-01-10 18:44:03,440 [wrapper] Test setup, not cleaning
[2026-01-10 13:44:03] 2026-01-10 18:44:03,483 [wrapper] apfmon messages muted
[2026-01-10 13:44:03] 2026-01-10 18:44:03,517 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:44:03] 2026-01-10 18:44:03,542 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:44:03]  *** Error codes and diagnostics ***
[2026-01-10 13:44:03]     "exeErrorCode": 0,
[2026-01-10 13:44:03]     "exeErrorDiag": "",
[2026-01-10 13:44:03]     "pilotErrorCode": 0,
[2026-01-10 13:44:03]     "pilotErrorDiag": "",
[2026-01-10 13:44:03]  *** Listing of results directory ***
[2026-01-10 13:44:03] total 1568508
[2026-01-10 13:44:03] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 13:44:03] -rwx------. 1 boincer umatlas     36322 Jan  9 02:17 runpilot2-wrapper.sh
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:20 pilot3.tar.gz
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:21 queuedata.json
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas       100 Jan  9 11:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:44:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 11:49 run_atlas
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas       105 Jan  9 11:49 job.xml
[2026-01-10 13:44:03] -rw-r--r--. 3 boincer umatlas 391896450 Jan  9 11:49 EVNT.47962006._000020.pool.root.1
[2026-01-10 13:44:03] -rw-r--r--. 3 boincer umatlas 391896450 Jan  9 11:49 ATLAS.root_0
[2026-01-10 13:44:03] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:49 start_atlas.sh
[2026-01-10 13:44:03] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 11:49 shared
[2026-01-10 13:44:03] -rw-r--r--. 2 boincer umatlas    592608 Jan  9 11:49 input.tar.gz
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas         0 Jan  9 11:49 boinc_lockfile
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas      2892 Jan  9 15:28 pandaJob.out
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas        57 Jan  9 15:28 setup.sh.local
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas    989381 Jan  9 15:29 agis_schedconf.cvmfs.json
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas       533 Jan 10 13:31 boinc_task_state.xml
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas      6864 Jan 10 13:38 init_data.xml
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas 795501154 Jan 10 13:42 HITS.47962010._001458.pool.root.1
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas      1061 Jan 10 13:42 memory_monitor_summary.json
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas        96 Jan 10 13:43 pilot_heartbeat.json
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas   1516240 Jan 10 13:43 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas   2274865 Jan 10 13:43 log.47962010._001458.job.log.tgz.1
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas      8609 Jan 10 13:43 heartbeat.json
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 13:43 boinc_mmap_file
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas        29 Jan 10 13:43 wrapper_checkpoint.txt
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas       822 Jan 10 13:44 pilotlog.txt
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas   9189997 Jan 10 13:44 log.47962010._001458.job.log.1
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas       353 Jan 10 13:44 output.list
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas       620 Jan 10 13:44 runtime_log
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas  11489280 Jan 10 13:44 result.tar.gz
[2026-01-10 13:44:03] -rw-------. 1 boincer umatlas       785 Jan 10 13:44 xnyKDmRvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0QhKDmR4TUvn.diag
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas      9428 Jan 10 13:44 runtime_log.err
[2026-01-10 13:44:03] -rw-r--r--. 1 boincer umatlas     23503 Jan 10 13:44 stderr.txt
[2026-01-10 13:44:03] HITS file was successfully produced:
[2026-01-10 13:44:04] -rw-------. 1 boincer umatlas 795501154 Jan 10 13:42 shared/HITS.pool.root.1
[2026-01-10 13:44:04]  *** Contents of shared directory: ***
[2026-01-10 13:44:04] total 1171396
[2026-01-10 13:44:04] -rw-r--r--. 3 boincer umatlas 391896450 Jan  9 11:49 ATLAS.root_0
[2026-01-10 13:44:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:49 start_atlas.sh
[2026-01-10 13:44:04] -rw-r--r--. 2 boincer umatlas    592608 Jan  9 11:49 input.tar.gz
[2026-01-10 13:44:04] -rw-------. 1 boincer umatlas 795501154 Jan 10 13:42 HITS.pool.root.1
[2026-01-10 13:44:04] -rw-------. 1 boincer umatlas  11489280 Jan 10 13:44 result.tar.gz
13:44:05 (623412): run_atlas exited; CPU time 279096.061546
13:44:05 (623412): called boinc_finish(0)

</stderr_txt>
]]>

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