Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:27:32 (1980061): wrapper (7.7.26015): starting
11:27:32 (1980061): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 11:27:32] Arguments: --nthreads 8
[2026-01-09 11:27:32] Threads: 8
[2026-01-09 11:27:32] Checking for CVMFS
[2026-01-09 11:27:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:27:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:27:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:27:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:27:33] 2.13.3.0 6968 23117 215048 154950 0 212 21694008 40960000 19919 16776704 0 81701393 99.593 88559945 34834 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 11:27:33] CVMFS is ok
[2026-01-09 11:27:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:27:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:27:33] Further information can be found at the LHC@home message board.
[2026-01-09 11:27:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:27:33] Checking for apptainer binary...
[2026-01-09 11:27:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:27:33] Running /usr/bin/apptainer --version
[2026-01-09 11:27:33] apptainer version 1.4.5-2.el9
[2026-01-09 11:27:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:27:34] c-212-5.aglt2.org
[2026-01-09 11:27:34] apptainer works
[2026-01-09 11:27:34] Set ATHENA_PROC_NUMBER=8
[2026-01-09 11:27:34] Set ATHENA_CORE_NUMBER=8
[2026-01-09 11:27:34] Starting ATLAS job with PandaID=6963379671
[2026-01-09 11:27:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:47:14 (3724084): wrapper (7.7.26015): starting
20:47:14 (3724084): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 20:47:14] Arguments: --nthreads 9
[2026-01-09 20:47:14] Threads: 9
[2026-01-09 20:47:14] This job has been restarted, cleaning up previous attempt
[2026-01-09 20:47:14] Checking for CVMFS
[2026-01-09 20:47:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:47:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:47:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:47:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:47:14] 2.13.3.0 6968 23676 215760 154963 1 177 24914821 40960001 17033 16776704 0 83055921 99.598 88815779 34833 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 20:47:14] CVMFS is ok
[2026-01-09 20:47:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:47:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:47:15] Further information can be found at the LHC@home message board.
[2026-01-09 20:47:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:47:15] Checking for apptainer binary...
[2026-01-09 20:47:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:47:15] Running /usr/bin/apptainer --version
[2026-01-09 20:47:15] apptainer version 1.4.5-2.el9
[2026-01-09 20:47:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:47:15] c-212-5.aglt2.org
[2026-01-09 20:47:15] apptainer works
[2026-01-09 20:47:15] Set ATHENA_PROC_NUMBER=9
[2026-01-09 20:47:15] Set ATHENA_CORE_NUMBER=9
[2026-01-09 20:47:15] Starting ATLAS job with PandaID=6963379671
[2026-01-09 20:47:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:37:54]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:37:54] 2026-01-10 14:36:52,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,154 | INFO     | time since job start (46163s) is within the limit (349056.0s)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,425 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 09:37:54] 2026-01-10 14:36:53,447 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3164.5022916666658
[2026-01-10 09:37:54] 2026-01-10 14:36:53,462 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963379671/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,463 | INFO     | extracted standard info from prmon json
[2026-01-10 09:37:54] 2026-01-10 14:36:53,463 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:37:54] 2026-01-10 14:36:53,463 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:37:54] 2026-01-10 14:36:53,474 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:37:54] 2026-01-10 14:36:53,475 | INFO     | sum of square deviations: 133974607864.74095
[2026-01-10 09:37:54] 2026-01-10 14:36:53,487 | INFO     | sum of deviations: 1982600118395.852
[2026-01-10 09:37:54] 2026-01-10 14:36:53,487 | INFO     | mean x: 1768032712.4814816
[2026-01-10 09:37:54] 2026-01-10 14:36:53,487 | INFO     | mean y: 2969180.453703704
[2026-01-10 09:37:54] 2026-01-10 14:36:53,487 | INFO     | intersect: -26160957857.365524
[2026-01-10 09:37:54] 2026-01-10 14:36:53,488 | INFO     | chi2: 4.7821592329360785
[2026-01-10 09:37:54] 2026-01-10 14:36:53,488 | INFO     | sum of square deviations: 131334021864.89229
[2026-01-10 09:37:54] 2026-01-10 14:36:53,499 | INFO     | sum of deviations: 2185820420556.4167
[2026-01-10 09:37:54] 2026-01-10 14:36:53,499 | INFO     | mean x: 1768032559.988016
[2026-01-10 09:37:54] 2026-01-10 14:36:53,499 | INFO     | mean y: 2980907.2689747005
[2026-01-10 09:37:54] 2026-01-10 14:36:53,500 | INFO     | intersect: -29422765894.318268
[2026-01-10 09:37:54] 2026-01-10 14:36:53,500 | INFO     | chi2: 2.588985816162666
[2026-01-10 09:37:54] 2026-01-10 14:36:53,500 | INFO     | current chi2=2.588985816162666 (change=45.86157235560893 %)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,501 | INFO     | sum of square deviations: 128728137702.39174
[2026-01-10 09:37:54] 2026-01-10 14:36:53,512 | INFO     | sum of deviations: 2187479468404.6548
[2026-01-10 09:37:54] 2026-01-10 14:36:53,512 | INFO     | mean x: 1768032407.4879355
[2026-01-10 09:37:54] 2026-01-10 14:36:53,512 | INFO     | mean y: 2980996.7949061664
[2026-01-10 09:37:54] 2026-01-10 14:36:53,512 | INFO     | intersect: -30041224255.325768
[2026-01-10 09:37:54] 2026-01-10 14:36:53,513 | INFO     | chi2: 2.4704527256396593
[2026-01-10 09:37:54] 2026-01-10 14:36:53,513 | INFO     | current chi2=2.4704527256396593 (change=4.57835998107914 %)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,513 | INFO     | right removable region: 745
[2026-01-10 09:37:54] 2026-01-10 14:36:53,514 | INFO     | sum of square deviations: 131333569244.89233
[2026-01-10 09:37:54] 2026-01-10 14:36:53,525 | INFO     | sum of deviations: 1765123401914.1567
[2026-01-10 09:37:54] 2026-01-10 14:36:53,526 | INFO     | mean x: 1768032864.988016
[2026-01-10 09:37:54] 2026-01-10 14:36:53,526 | INFO     | mean y: 2981719.239680426
[2026-01-10 09:37:54] 2026-01-10 14:36:53,526 | INFO     | intersect: -23759383099.49496
[2026-01-10 09:37:54] 2026-01-10 14:36:53,528 | INFO     | chi2: 2.6071917852247446
[2026-01-10 09:37:54] 2026-01-10 14:36:53,528 | INFO     | current chi2=2.6071917852247446 (change=45.48086631519336 %)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,529 | INFO     | sum of square deviations: 128727552770.45189
[2026-01-10 09:37:54] 2026-01-10 14:36:53,540 | INFO     | sum of deviations: 1705379672629.8816
[2026-01-10 09:37:54] 2026-01-10 14:36:53,540 | INFO     | mean x: 1768033017.4919572
[2026-01-10 09:37:54] 2026-01-10 14:36:53,540 | INFO     | mean y: 2985214.896782842
[2026-01-10 09:37:54] 2026-01-10 14:36:53,540 | INFO     | intersect: -23419875731.942852
[2026-01-10 09:37:54] 2026-01-10 14:36:53,541 | INFO     | chi2: 2.5807540216556086
[2026-01-10 09:37:54] 2026-01-10 14:36:53,541 | INFO     | current chi2=2.5807540216556086 (change=1.0140321751150725 %)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,541 | INFO     | left removable region: 20
[2026-01-10 09:37:54] 2026-01-10 14:36:53,542 | INFO     | sum of square deviations: 118158959907.95024
[2026-01-10 09:37:54] 2026-01-10 14:36:53,553 | INFO     | sum of deviations: 1803282513820.4136
[2026-01-10 09:37:54] 2026-01-10 14:36:53,553 | INFO     | mean x: 1768032987.0082757
[2026-01-10 09:37:54] 2026-01-10 14:36:53,553 | INFO     | mean y: 3003428.0979310344
[2026-01-10 09:37:54] 2026-01-10 14:36:53,553 | INFO     | intersect: -26979825227.583035
[2026-01-10 09:37:54] 2026-01-10 14:36:53,554 | INFO     | chi2: 0.23743570507047687
[2026-01-10 09:37:54] 2026-01-10 14:36:53,554 | INFO     | current memory leak: 15.26 B/s (using 725 data points, chi2=0.24)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | could have reported an average CPU frequency of 3186 MHz (29 samples)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | ..............................
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . Timing measurements:
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . get job = 0 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . initial setup = 2 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . payload setup = 8 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . stage-in = 0 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . payload execution = 46123 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . stage-out = 2 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,555 | INFO     | . log creation = 0 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,556 | INFO     | ..............................
[2026-01-10 09:37:54] 2026-01-10 14:36:53,637 | INFO     | 
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | job summary report
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | --------------------------------------------------
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | PanDA job id: 6963379671
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | task id: 47962010
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | errors: (none)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | pilot state: finished 
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | transexitcode: 0
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | exeerrorcode: 0
[2026-01-10 09:37:54] 2026-01-10 14:36:53,638 | INFO     | exeerrordiag: 
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | exitcode: 0
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | exitmsg: OK
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | cpuconsumptiontime: 201943 s
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | nevents: 900
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | neventsw: 0
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | pid: 3767894
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | pgrp: 3767894
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | corecount: 9
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | event service: False
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | sizes: {0: 2284622, 6: 2284884, 11: 2284912, 46135: 2331191, 46136: 2331190, 46139: 2340424, 46146: 2340614}
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | --------------------------------------------------
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | 
[2026-01-10 09:37:54] 2026-01-10 14:36:53,639 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-10 09:37:54] 2026-01-10 14:36:53,661 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,661 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,662 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | job 6963379671 has completed (purged errors)
[2026-01-10 09:37:54] 2026-01-10 14:36:53,663 | INFO     | overall cleanup function is called
[2026-01-10 09:37:54] 2026-01-10 14:36:54,680 | INFO     | --- collectZombieJob: --- 10, [3767894]
[2026-01-10 09:37:54] 2026-01-10 14:36:54,682 | INFO     | zombie collector waiting for pid 3767894
[2026-01-10 09:37:54] 2026-01-10 14:36:54,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:37:54] 2026-01-10 14:36:54,683 | INFO     | collected zombie processes
[2026-01-10 09:37:54] 2026-01-10 14:36:54,683 | INFO     | will attempt to kill all subprocesses of pid=3767894
[2026-01-10 09:37:54] 2026-01-10 14:36:54,807 | INFO     | PID=3739560 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 09:37:54] 2026-01-10 14:36:54,807 | INFO     | .. there are 16 such processes running
[2026-01-10 09:37:54] 2026-01-10 14:36:55,198 | INFO     | process IDs to be killed: [3767894] (in reverse order)
[2026-01-10 09:37:54] 2026-01-10 14:36:55,338 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:37:54] 2026-01-10 14:36:55,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:37:54] 2026-01-10 14:36:55,355 | INFO     | did not find any defunct processes belonging to 3767894
[2026-01-10 09:37:54] 2026-01-10 14:36:55,371 | INFO     | did not find any defunct processes belonging to 3767894
[2026-01-10 09:37:54] 2026-01-10 14:36:55,371 | INFO     | ready for new job
[2026-01-10 09:37:54] 2026-01-10 14:36:55,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:37:54] 2026-01-10 14:36:55,375 | INFO     | ***************************************
[2026-01-10 09:37:54] 2026-01-10 14:36:55,375 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:37:54] 2026-01-10 14:36:55,375 | INFO     | ***************************************
[2026-01-10 09:37:54] 2026-01-10 14:36:55,375 | INFO     | 
[2026-01-10 09:37:54] 2026-01-10 14:36:55,379 | INFO     | architecture information:
[2026-01-10 09:37:54] 2026-01-10 14:36:55,380 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:37:54] 2026-01-10 14:36:55,396 | INFO     | cat /etc/os-release:
[2026-01-10 09:37:54] NAME="CentOS Linux"
[2026-01-10 09:37:54] VERSION="7 (Core)"
[2026-01-10 09:37:54] ID="centos"
[2026-01-10 09:37:54] ID_LIKE="rhel fedora"
[2026-01-10 09:37:54] VERSION_ID="7"
[2026-01-10 09:37:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:37:54] ANSI_COLOR="0;31"
[2026-01-10 09:37:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:37:54] HOME_URL="https://www.centos.org/"
[2026-01-10 09:37:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:37:54] 
[2026-01-10 09:37:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:37:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:37:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:37:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:37:54] 
[2026-01-10 09:37:54] 2026-01-10 14:36:55,396 | INFO     | ***************************************
[2026-01-10 09:37:54] 2026-01-10 14:36:55,899 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-10 09:37:54] 2026-01-10 14:36:55,926 | INFO     | sufficient remaining disk space (127842385920 B)
[2026-01-10 09:37:54] 2026-01-10 14:36:55,927 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:37:54] 2026-01-10 14:36:55,927 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:37:54] 2026-01-10 14:36:55,927 | INFO     | update_server=False
[2026-01-10 09:37:54] 2026-01-10 14:36:55,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:37:54] 2026-01-10 14:36:56,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:37:54] 2026-01-10 14:36:56,299 | INFO     | aborting loop
[2026-01-10 09:37:54] 2026-01-10 14:36:56,365 | INFO     | all job control threads have been joined
[2026-01-10 09:37:54] 2026-01-10 14:36:56,860 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:37:54] 2026-01-10 14:36:56,861 | INFO     | all data control threads have been joined
[2026-01-10 09:37:54] 2026-01-10 14:36:56,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:37:54] 2026-01-10 14:36:56,932 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,131 | INFO     | all payload control threads have been joined
[2026-01-10 09:37:54] 2026-01-10 14:36:57,150 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,213 | INFO     | [job] validate thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,263 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,303 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,370 | INFO     | [job] control thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,439 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,467 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,499 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,653 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:57,867 | INFO     | [data] control thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:58,101 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:58,137 | INFO     | [payload] control thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:58,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:37:54] 2026-01-10 14:36:58,866 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:36:59,656 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:37:00,940 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:37:54] 2026-01-10 14:37:27,341 | INFO     | PID=3739560 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:37:54] 2026-01-10 14:37:27,342 | INFO     | .. there are 16 such processes running
[2026-01-10 09:37:54] 2026-01-10 14:37:27,342 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:37:54] 2026-01-10 14:37:27,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:37:54] 2026-01-10 14:37:27,342 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:37:54] 2026-01-10 14:37:48,754 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:37:54] 2026-01-10 14:37:48,815 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139907201972032)>', '<ExcThread(monitor, started 139906655438592)>']
[2026-01-10 09:37:54] 2026-01-10 14:37:49,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:37:54] 2026-01-10 14:37:49,455 | INFO     | [monitor] control thread has ended
[2026-01-10 09:37:54] 2026-01-10 14:37:53,841 | INFO     | all workflow threads have been joined
[2026-01-10 09:37:54] 2026-01-10 14:37:53,841 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:37:54] 2026-01-10 14:37:53,842 | INFO     | traces error code: 0
[2026-01-10 09:37:54] 2026-01-10 14:37:53,842 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:37:54] 2026-01-10 14:37:53,942 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:37:54] 2026-01-10 14:37:53,946 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:37:54] 2026-01-10 14:37:53,948 [wrapper] pilotpid: 3739560
[2026-01-10 09:37:54] 2026-01-10 14:37:53,951 [wrapper] Pilot exit status: 0
[2026-01-10 09:37:54] 2026-01-10 14:37:53,969 [wrapper] pandaids: 6963379671 6963379671
[2026-01-10 09:37:54] 2026-01-10 14:37:54,075 [wrapper] cleanup supervisor_pilot 2667209 3739561
[2026-01-10 09:37:54] 2026-01-10 14:37:54,079 [wrapper] Test setup, not cleaning
[2026-01-10 09:37:54] 2026-01-10 14:37:54,082 [wrapper] apfmon messages muted
[2026-01-10 09:37:54] 2026-01-10 14:37:54,085 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:37:54] 2026-01-10 14:37:54,087 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:37:54]  *** Error codes and diagnostics ***
[2026-01-10 09:37:54]     "exeErrorCode": 0,
[2026-01-10 09:37:54]     "exeErrorDiag": "",
[2026-01-10 09:37:54]     "pilotErrorCode": 0,
[2026-01-10 09:37:54]     "pilotErrorDiag": "",
[2026-01-10 09:37:54]  *** Listing of results directory ***
[2026-01-10 09:37:54] total 1578536
[2026-01-10 09:37:54] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 09:37:54] -rwx------. 1 boincer umatlas     36322 Jan  9 02:17 runpilot2-wrapper.sh
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:20 pilot3.tar.gz
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:21 queuedata.json
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas       100 Jan  9 11:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:37:54] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 11:27 run_atlas
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas       105 Jan  9 11:27 job.xml
[2026-01-10 09:37:54] -rw-r--r--. 3 boincer umatlas 392975142 Jan  9 11:27 EVNT.47962006._000017.pool.root.1
[2026-01-10 09:37:54] -rw-r--r--. 3 boincer umatlas 392975142 Jan  9 11:27 ATLAS.root_0
[2026-01-10 09:37:54] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:27 start_atlas.sh
[2026-01-10 09:37:54] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 11:27 shared
[2026-01-10 09:37:54] -rw-r--r--. 2 boincer umatlas    592613 Jan  9 11:27 input.tar.gz
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas         0 Jan  9 11:27 boinc_lockfile
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas      2892 Jan  9 20:47 pandaJob.out
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas        57 Jan  9 20:47 setup.sh.local
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas    989382 Jan  9 20:47 agis_schedconf.cvmfs.json
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas       533 Jan 10 09:28 boinc_task_state.xml
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas 810041877 Jan 10 09:36 HITS.47962010._001428.pool.root.1
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas      6958 Jan 10 09:36 init_data.xml
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas      1069 Jan 10 09:36 memory_monitor_summary.json
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas   1516240 Jan 10 09:36 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas   2064677 Jan 10 09:36 log.47962010._001428.job.log.tgz.1
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas      8615 Jan 10 09:36 heartbeat.json
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas        96 Jan 10 09:36 pilot_heartbeat.json
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas        29 Jan 10 09:37 wrapper_checkpoint.txt
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 09:37 boinc_mmap_file
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas      4825 Jan 10 09:37 pilotlog.txt
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas   6181250 Jan 10 09:37 log.47962010._001428.job.log.1
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas       353 Jan 10 09:37 output.list
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas       620 Jan 10 09:37 runtime_log
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas   8263680 Jan 10 09:37 result.tar.gz
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas      9423 Jan 10 09:37 runtime_log.err
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas       790 Jan 10 09:37 c6oKDmRvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtQhKDmrdSh9m.diag
[2026-01-10 09:37:54] -rw-r--r--. 1 boincer umatlas     23480 Jan 10 09:37 stderr.txt
[2026-01-10 09:37:54] HITS file was successfully produced:
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas 810041877 Jan 10 09:36 shared/HITS.pool.root.1
[2026-01-10 09:37:54]  *** Contents of shared directory: ***
[2026-01-10 09:37:54] total 1183504
[2026-01-10 09:37:54] -rw-r--r--. 3 boincer umatlas 392975142 Jan  9 11:27 ATLAS.root_0
[2026-01-10 09:37:54] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:27 start_atlas.sh
[2026-01-10 09:37:54] -rw-r--r--. 2 boincer umatlas    592613 Jan  9 11:27 input.tar.gz
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas 810041877 Jan 10 09:36 HITS.pool.root.1
[2026-01-10 09:37:54] -rw-------. 1 boincer umatlas   8263680 Jan 10 09:37 result.tar.gz
09:37:55 (3724084): run_atlas exited; CPU time 201541.133805
09:37:55 (3724084): called boinc_finish(0)

</stderr_txt>
]]>

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