Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:53:03 (9668): wrapper (7.7.26015): starting
09:53:03 (9668): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 09:53:03] Arguments: --nthreads 3
[2026-01-10 09:53:03] Threads: 3
[2026-01-10 09:53:03] Checking for CVMFS
[2026-01-10 09:53:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:53:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:53:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:53:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:53:03] 2.9.2.0 3347489 3481 85264 154973 2 57 15622805 36864000 0 130560 0 2167901 99.988 129060 6708 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 09:53:03] CVMFS is ok
[2026-01-10 09:53:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:53:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:53:03] Further information can be found at the LHC@home message board.
[2026-01-10 09:53:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:53:03] Checking for apptainer binary...
[2026-01-10 09:53:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:53:03] Running /usr/bin/apptainer --version
[2026-01-10 09:53:03] apptainer version 1.4.1-1.1
[2026-01-10 09:53:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:53:03] thA325a
[2026-01-10 09:53:03] apptainer works
[2026-01-10 09:53:03] Set ATHENA_PROC_NUMBER=3
[2026-01-10 09:53:03] Set ATHENA_CORE_NUMBER=3
[2026-01-10 09:53:03] Starting ATLAS job with PandaID=6963199445
[2026-01-10 09:53:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 14:14:34]  *** The last 200 lines of the pilot log: ***
[2026-01-10 14:14:34] 2026-01-10 13:13:48,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 14:14:34] 2026-01-10 13:13:49,014 | INFO     | all data control threads have been joined
[2026-01-10 14:14:34] 2026-01-10 13:13:49,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:14:34] 2026-01-10 13:13:49,594 | INFO     | aborting loop
[2026-01-10 14:14:34] 2026-01-10 13:13:49,627 | INFO     | all job control threads have been joined
[2026-01-10 14:14:34] 2026-01-10 13:13:49,671 | INFO     | all payload control threads have been joined
[2026-01-10 14:14:34] 2026-01-10 13:13:49,880 | INFO     | [job] retrieve thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:49,880 | INFO     | [job] queue monitor thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,020 | INFO     | [data] control thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,411 | INFO     | [payload] validate_post thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,476 | INFO     | [data] copytool_in thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,599 | INFO     | [job] job monitor thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,633 | INFO     | [job] control thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,676 | INFO     | [payload] control thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,876 | INFO     | [job] validate thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,885 | INFO     | [data] copytool_out thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:50,947 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:51,065 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:51,088 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:51,313 | INFO     | [payload] failed_post thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:51,493 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 14:14:34] 2026-01-10 13:13:55,500 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:13:59,010 | INFO     | job.realtimelogging is not enabled
[2026-01-10 14:14:34] 2026-01-10 13:14:00,016 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 14:14:34] 2026-01-10 13:14:19,397 | INFO     | PID=13395 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 14:14:34] 2026-01-10 13:14:19,397 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 14:14:34] 2026-01-10 13:14:19,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 14:14:34] 2026-01-10 13:14:19,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 14:14:34] 2026-01-10 13:14:27,280 | INFO     | [monitor] cgroup control has ended
[2026-01-10 14:14:34] 2026-01-10 13:14:29,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139710618814272)>', '<ExcThread(monitor, started 139710336829184)>']
[2026-01-10 14:14:34] 2026-01-10 13:14:29,440 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 14:14:34] 2026-01-10 13:14:29,440 | INFO     | [monitor] control thread has ended
[2026-01-10 14:14:34] 2026-01-10 13:14:34,208 | INFO     | all workflow threads have been joined
[2026-01-10 14:14:34] 2026-01-10 13:14:34,208 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 14:14:34] 2026-01-10 13:14:34,209 | INFO     | traces error code: 0
[2026-01-10 14:14:34] 2026-01-10 13:14:34,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 14:14:34] 2026-01-10 13:14:34,262 [wrapper] ==== pilot stdout END ====
[2026-01-10 14:14:34] 2026-01-10 13:14:34,264 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 14:14:34] 2026-01-10 13:14:34,267 [wrapper] pilotpid: 13395
[2026-01-10 14:14:34] 2026-01-10 13:14:34,269 [wrapper] Pilot exit status: 0
[2026-01-10 14:14:34] 2026-01-10 13:14:34,276 [wrapper] pandaids: 6963199445
[2026-01-10 14:14:34] 2026-01-10 13:14:34,294 [wrapper] cleanup supervisor_pilot   50716 13396
[2026-01-10 14:14:34] 2026-01-10 13:14:34,296 [wrapper] Test setup, not cleaning
[2026-01-10 14:14:34] 2026-01-10 13:14:34,298 [wrapper] apfmon messages muted
[2026-01-10 14:14:34] 2026-01-10 13:14:34,301 [wrapper] ==== wrapper stdout END ====
[2026-01-10 14:14:34] 2026-01-10 13:14:34,303 [wrapper] ==== wrapper stderr END ====
[2026-01-10 14:14:34]  *** Error codes and diagnostics ***
[2026-01-10 14:14:34]     "exeErrorCode": 0,
[2026-01-10 14:14:34]     "exeErrorDiag": "",
[2026-01-10 14:14:34]     "pilotErrorCode": 0,
[2026-01-10 14:14:34]     "pilotErrorDiag": "",
[2026-01-10 14:14:34]  *** Listing of results directory ***
[2026-01-10 14:14:34] total 774216
[2026-01-10 14:14:34] -rwx------ 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc      5112 Jan  9 08:20 queuedata.json
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc       100 Jan 10 09:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 14:14:34] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 09:53 run_atlas
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc       105 Jan 10 09:53 job.xml
[2026-01-10 14:14:34] -rw-r--r-- 2 boinc boinc 393331237 Jan 10 09:53 EVNT.47962006._000068.pool.root.1
[2026-01-10 14:14:34] drwxrwx--x 2 boinc boinc      4096 Jan 10 09:53 shared
[2026-01-10 14:14:34] -rw-r--r-- 2 boinc boinc    592609 Jan 10 09:53 input.tar.gz
[2026-01-10 14:14:34] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:53 start_atlas.sh
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:53 boinc_setup_complete
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc      6440 Jan 10 09:53 init_data.xml
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:53 boinc_lockfile
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc      2891 Jan 10 09:53 pandaJob.out
[2026-01-10 14:14:34] -rw------- 1 boinc boinc    989548 Jan 10 09:53 agis_schedconf.cvmfs.json
[2026-01-10 14:14:34] drwx------ 5 boinc boinc      4096 Jan 10 09:53 pilot3
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc       531 Jan 10 14:09 boinc_task_state.xml
[2026-01-10 14:14:34] -rw------- 1 boinc boinc 389336551 Jan 10 14:13 HITS.47962010._000849.pool.root.1
[2026-01-10 14:14:34] -rw------- 1 boinc boinc        95 Jan 10 14:13 pilot_heartbeat.json
[2026-01-10 14:14:34] -rw------- 1 boinc boinc      1019 Jan 10 14:13 memory_monitor_summary.json
[2026-01-10 14:14:34] -rw------- 1 boinc boinc   1516240 Jan 10 14:13 agis_ddmendpoints.agis.ALL.json
[2026-01-10 14:14:34] -rw------- 1 boinc boinc    900330 Jan 10 14:13 log.47962010._000849.job.log.tgz.1
[2026-01-10 14:14:34] -rw------- 1 boinc boinc      8550 Jan 10 14:13 heartbeat.json
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc        28 Jan 10 14:14 wrapper_checkpoint.txt
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc      8192 Jan 10 14:14 boinc_mmap_file
[2026-01-10 14:14:34] -rw------- 1 boinc boinc      4822 Jan 10 14:14 pilotlog.txt
[2026-01-10 14:14:34] -rw------- 1 boinc boinc   2215581 Jan 10 14:14 log.47962010._000849.job.log.1
[2026-01-10 14:14:34] -rw------- 1 boinc boinc       353 Jan 10 14:14 output.list
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc       620 Jan 10 14:14 runtime_log
[2026-01-10 14:14:34] -rw------- 1 boinc boinc   3133440 Jan 10 14:14 result.tar.gz
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc      8903 Jan 10 14:14 runtime_log.err
[2026-01-10 14:14:34] -rw------- 1 boinc boinc       665 Jan 10 14:14 kdMLDmFvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2amKDmbyir6n.diag
[2026-01-10 14:14:34] -rw-r--r-- 1 boinc boinc      7151 Jan 10 14:14 stderr.txt
[2026-01-10 14:14:34] HITS file was successfully produced:
[2026-01-10 14:14:34] -rw------- 1 boinc boinc 389336551 Jan 10 14:13 shared/HITS.pool.root.1
[2026-01-10 14:14:34]  *** Contents of shared directory: ***
[2026-01-10 14:14:34] total 767992
[2026-01-10 14:14:34] -rw-r--r-- 2 boinc boinc 393331237 Jan 10 09:53 ATLAS.root_0
[2026-01-10 14:14:34] -rw-r--r-- 2 boinc boinc    592609 Jan 10 09:53 input.tar.gz
[2026-01-10 14:14:34] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:53 start_atlas.sh
[2026-01-10 14:14:34] -rw------- 1 boinc boinc 389336551 Jan 10 14:13 HITS.pool.root.1
[2026-01-10 14:14:34] -rw------- 1 boinc boinc   3133440 Jan 10 14:14 result.tar.gz
14:14:35 (9668): run_atlas exited; CPU time 45417.524504
14:14:35 (9668): called boinc_finish(0)

</stderr_txt>
]]>

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