Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:10:58 (5228): wrapper (7.7.26015): starting
20:10:58 (5228): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 20:10:58] Arguments: --nthreads 8
[2026-01-09 20:10:58] Threads: 8
[2026-01-09 20:10:58] Checking for CVMFS
[2026-01-09 20:10:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:10:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:10:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:10:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:10:59] 2.11.2.0 1035 35818 97188 154954 2 56 17244459 25165824 0 130560 0 14662880 99.817 10084802 4244 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 20:10:59] CVMFS is ok
[2026-01-09 20:10:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:10:59] Checking for apptainer binary...
[2026-01-09 20:10:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:10:59] Running /usr/bin/apptainer --version
[2026-01-09 20:10:59] apptainer version 1.3.2-1.el7
[2026-01-09 20:10:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:11:00] cg-vwn358.simple-grid.lan
[2026-01-09 20:11:00] apptainer works
[2026-01-09 20:11:00] Set ATHENA_PROC_NUMBER=8
[2026-01-09 20:11:00] Set ATHENA_CORE_NUMBER=8
[2026-01-09 20:11:00] Starting ATLAS job with PandaID=6963378810
[2026-01-09 20:11:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 19:55:07]  *** The last 200 lines of the pilot log: ***
[2026-01-10 19:55:07] 2026-01-10 18:54:18,779 | INFO     | monitor loop #5690: job 0:6963378810 is in state 'finished'
[2026-01-10 19:55:07] 2026-01-10 18:54:18,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:55:07] 2026-01-10 18:54:20,026 | INFO     | time since job start (85386s) is within the limit (349056.0s)
[2026-01-10 19:55:07] 2026-01-10 18:54:21,288 | INFO     | monitor loop #5691: job 0:6963378810 is in state 'finished'
[2026-01-10 19:55:07] 2026-01-10 18:54:21,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:55:07] 2026-01-10 18:54:22,038 | INFO     | time since job start (85388s) is within the limit (349056.0s)
[2026-01-10 19:55:07] 2026-01-10 18:54:23,792 | INFO     | monitor loop #5692: job 0:6963378810 is in state 'finished'
[2026-01-10 19:55:07] 2026-01-10 18:54:23,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:55:07] 2026-01-10 18:54:24,050 | INFO     | time since job start (85390s) is within the limit (349056.0s)
[2026-01-10 19:55:07] 2026-01-10 18:54:25,179 | INFO     | PID=8962 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 19:55:07] 2026-01-10 18:54:25,179 | INFO     | .. there are 2 such processes running
[2026-01-10 19:55:07] 2026-01-10 18:54:26,180 | INFO     | time since job start (85392s) is within the limit (349056.0s)
[2026-01-10 19:55:07] 2026-01-10 18:54:26,309 | INFO     | monitor loop #5693: job 0:6963378810 is in state 'finished'
[2026-01-10 19:55:07] 2026-01-10 18:54:26,310 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 19:55:07] 2026-01-10 18:54:27,444 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 19:55:07] 2026-01-10 18:54:27,445 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 19:55:07] 2026-01-10 18:54:27,447 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6963378810/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 19:55:07] 2026-01-10 18:54:27,448 | INFO     | extracted standard info from prmon json
[2026-01-10 19:55:07] 2026-01-10 18:54:27,448 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 19:55:07] 2026-01-10 18:54:27,448 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 19:55:07] 2026-01-10 18:54:27,475 | INFO     | fitting pss+swap vs Time
[2026-01-10 19:55:07] 2026-01-10 18:54:27,477 | INFO     | sum of square deviations: 847232899139.3394
[2026-01-10 19:55:07] 2026-01-10 18:54:27,559 | INFO     | sum of deviations: 828546173187.9922
[2026-01-10 19:55:07] 2026-01-10 18:54:27,560 | INFO     | mean x: 1768028514.5107296
[2026-01-10 19:55:07] 2026-01-10 18:54:27,560 | INFO     | mean y: 2855417.4341917024
[2026-01-10 19:55:07] 2026-01-10 18:54:27,560 | INFO     | intersect: -1726177132.261678
[2026-01-10 19:55:07] 2026-01-10 18:54:27,562 | INFO     | chi2: 18.487285192502902
[2026-01-10 19:55:07] 2026-01-10 18:54:27,564 | INFO     | sum of square deviations: 838175383521.7139
[2026-01-10 19:55:07] 2026-01-10 18:54:27,663 | INFO     | sum of deviations: 1304426204497.0312
[2026-01-10 19:55:07] 2026-01-10 18:54:27,664 | INFO     | mean x: 1768028362.0143576
[2026-01-10 19:55:07] 2026-01-10 18:54:27,664 | INFO     | mean y: 2863429.1486001434
[2026-01-10 19:55:07] 2026-01-10 18:54:27,664 | INFO     | intersect: -2748663961.235259
[2026-01-10 19:55:07] 2026-01-10 18:54:27,666 | INFO     | chi2: 15.07717035927529
[2026-01-10 19:55:07] 2026-01-10 18:54:27,666 | INFO     | current chi2=15.07717035927529 (change=18.445730661473796 %)
[2026-01-10 19:55:07] 2026-01-10 18:54:27,666 | INFO     | right removable region: 1392
[2026-01-10 19:55:07] 2026-01-10 18:54:27,668 | INFO     | sum of square deviations: 838174521591.7148
[2026-01-10 19:55:07] 2026-01-10 18:54:27,724 | INFO     | sum of deviations: 425067734766.08136
[2026-01-10 19:55:07] 2026-01-10 18:54:27,724 | INFO     | mean x: 1768028667.0143576
[2026-01-10 19:55:07] 2026-01-10 18:54:27,725 | INFO     | mean y: 2862204.5958363246
[2026-01-10 19:55:07] 2026-01-10 18:54:27,725 | INFO     | intersect: -893767221.7700582
[2026-01-10 19:55:07] 2026-01-10 18:54:27,727 | INFO     | chi2: 16.027203922195472
[2026-01-10 19:55:07] 2026-01-10 18:54:27,727 | INFO     | current chi2=16.027203922195472 (change=13.306882241991163 %)
[2026-01-10 19:55:07] 2026-01-10 18:54:27,727 | INFO     | left removable region: 10
[2026-01-10 19:55:07] 2026-01-10 18:54:27,729 | INFO     | sum of square deviations: 818474865386.8052
[2026-01-10 19:55:07] 2026-01-10 18:54:27,797 | INFO     | sum of deviations: 910628518230.2183
[2026-01-10 19:55:07] 2026-01-10 18:54:27,797 | INFO     | mean x: 1768028636.5224314
[2026-01-10 19:55:07] 2026-01-10 18:54:27,797 | INFO     | mean y: 2873745.589725036
[2026-01-10 19:55:07] 2026-01-10 18:54:27,797 | INFO     | intersect: -1964220621.6931758
[2026-01-10 19:55:07] 2026-01-10 18:54:27,799 | INFO     | chi2: 11.679128006142804
[2026-01-10 19:55:07] 2026-01-10 18:54:27,799 | INFO     | current memory leak: 1.11 B/s (using 1382 data points, chi2=11.68)
[2026-01-10 19:55:07] 2026-01-10 18:54:27,801 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2026-01-10 19:55:07] 2026-01-10 18:54:27,801 | INFO     | ..............................
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . Timing measurements:
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . get job = 0 s
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . initial setup = 2 s
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . payload setup = 7 s
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . stage-in = 0 s
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . payload execution = 85254 s
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . stage-out = 5 s
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | . log creation = 2 s
[2026-01-10 19:55:07] 2026-01-10 18:54:27,802 | INFO     | ..............................
[2026-01-10 19:55:07] 2026-01-10 18:54:28,088 | INFO     | 
[2026-01-10 19:55:07] 2026-01-10 18:54:28,089 | INFO     | job summary report
[2026-01-10 19:55:07] 2026-01-10 18:54:28,089 | INFO     | --------------------------------------------------
[2026-01-10 19:55:07] 2026-01-10 18:54:28,089 | INFO     | PanDA job id: 6963378810
[2026-01-10 19:55:07] 2026-01-10 18:54:28,089 | INFO     | task id: 47962010
[2026-01-10 19:55:07] 2026-01-10 18:54:28,089 | INFO     | errors: (none)
[2026-01-10 19:55:07] 2026-01-10 18:54:28,089 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 19:55:07] 2026-01-10 18:54:28,089 | INFO     | pilot state: finished 
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | transexitcode: 0
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | exeerrorcode: 0
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | exeerrordiag: 
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | exitcode: 0
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | exitmsg: OK
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | cpuconsumptiontime: 358967 s
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | nevents: 900
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | neventsw: 0
[2026-01-10 19:55:07] 2026-01-10 18:54:28,090 | INFO     | pid: 15390
[2026-01-10 19:55:07] 2026-01-10 18:54:28,091 | INFO     | pgrp: 15390
[2026-01-10 19:55:07] 2026-01-10 18:54:28,091 | INFO     | corecount: 8
[2026-01-10 19:55:07] 2026-01-10 18:54:28,091 | INFO     | event service: False
[2026-01-10 19:55:07] 2026-01-10 18:54:28,091 | INFO     | sizes: {0: 2284395, 1: 2284650, 6: 2284912, 12: 2284940, 85265: 2345740, 85266: 2345739, 85273: 2354917, 85275: 2354973, 85376: 2355219}
[2026-01-10 19:55:07] 2026-01-10 18:54:28,091 | INFO     | --------------------------------------------------
[2026-01-10 19:55:07] 2026-01-10 18:54:28,091 | INFO     | 
[2026-01-10 19:55:07] 2026-01-10 18:54:28,091 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-10 19:55:07] 2026-01-10 18:54:28,188 | INFO     | time since job start (85394s) is within the limit (349056.0s)
[2026-01-10 19:55:07] 2026-01-10 18:54:28,647 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,647 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,647 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,647 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,649 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 19:55:07] 2026-01-10 18:54:28,650 | INFO     | job 6963378810 has completed (purged errors)
[2026-01-10 19:55:07] 2026-01-10 18:54:28,650 | INFO     | overall cleanup function is called
[2026-01-10 19:55:07] 2026-01-10 18:54:29,675 | INFO     | --- collectZombieJob: --- 10, [15390]
[2026-01-10 19:55:07] 2026-01-10 18:54:29,676 | INFO     | zombie collector waiting for pid 15390
[2026-01-10 19:55:07] 2026-01-10 18:54:29,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 19:55:07] 2026-01-10 18:54:29,676 | INFO     | collected zombie processes
[2026-01-10 19:55:07] 2026-01-10 18:54:29,676 | INFO     | will attempt to kill all subprocesses of pid=15390
[2026-01-10 19:55:07] 2026-01-10 18:54:29,763 | INFO     | process IDs to be killed: [15390] (in reverse order)
[2026-01-10 19:55:07] 2026-01-10 18:54:30,365 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 19:55:07] 2026-01-10 18:54:30,365 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 19:55:07] 2026-01-10 18:54:30,367 | INFO     | did not find any defunct processes belonging to 15390
[2026-01-10 19:55:07] 2026-01-10 18:54:30,369 | INFO     | did not find any defunct processes belonging to 15390
[2026-01-10 19:55:07] 2026-01-10 18:54:30,369 | INFO     | ready for new job
[2026-01-10 19:55:07] 2026-01-10 18:54:30,370 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 19:55:07] 2026-01-10 18:54:30,375 | INFO     | ***************************************
[2026-01-10 19:55:07] 2026-01-10 18:54:30,375 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 19:55:07] 2026-01-10 18:54:30,375 | INFO     | ***************************************
[2026-01-10 19:55:07] 2026-01-10 18:54:30,376 | INFO     | 
[2026-01-10 19:55:07] 2026-01-10 18:54:30,376 | INFO     | pilot is running in a VM
[2026-01-10 19:55:07] 2026-01-10 18:54:30,376 | INFO     | architecture information:
[2026-01-10 19:55:07] 2026-01-10 18:54:30,383 | INFO     | executing command: cat /etc/os-release
[2026-01-10 19:55:07] 2026-01-10 18:54:30,536 | INFO     | cat /etc/os-release:
[2026-01-10 19:55:07] NAME="CentOS Linux"
[2026-01-10 19:55:07] VERSION="7 (Core)"
[2026-01-10 19:55:07] ID="centos"
[2026-01-10 19:55:07] ID_LIKE="rhel fedora"
[2026-01-10 19:55:07] VERSION_ID="7"
[2026-01-10 19:55:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 19:55:07] ANSI_COLOR="0;31"
[2026-01-10 19:55:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 19:55:07] HOME_URL="https://www.centos.org/"
[2026-01-10 19:55:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 19:55:07] 
[2026-01-10 19:55:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 19:55:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 19:55:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 19:55:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 19:55:07] 
[2026-01-10 19:55:07] 2026-01-10 18:54:30,536 | INFO     | ***************************************
[2026-01-10 19:55:07] 2026-01-10 18:54:31,040 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-10 19:55:07] 2026-01-10 18:54:31,163 | INFO     | sufficient remaining disk space (496250126336 B)
[2026-01-10 19:55:07] 2026-01-10 18:54:31,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 19:55:07] 2026-01-10 18:54:31,164 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 19:55:07] 2026-01-10 18:54:31,164 | INFO     | update_server=False
[2026-01-10 19:55:07] 2026-01-10 18:54:31,164 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 19:55:07] 2026-01-10 18:54:31,327 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 19:55:07] 2026-01-10 18:54:31,328 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 19:55:07] 2026-01-10 18:54:31,328 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:55:07] 2026-01-10 18:54:31,328 | INFO     | will abort loop
[2026-01-10 19:55:07] 2026-01-10 18:54:31,370 | INFO     | all data control threads have been joined
[2026-01-10 19:55:07] 2026-01-10 18:54:31,771 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 19:55:07] 2026-01-10 18:54:32,171 | INFO     | [job] retrieve thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,325 | INFO     | all job control threads have been joined
[2026-01-10 19:55:07] 2026-01-10 18:54:32,334 | INFO     | [job] job monitor thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,377 | INFO     | [data] control thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,422 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 19:55:07] 2026-01-10 18:54:32,566 | INFO     | all payload control threads have been joined
[2026-01-10 19:55:07] 2026-01-10 18:54:32,668 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,763 | INFO     | [payload] validate_post thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,875 | INFO     | [data] copytool_in thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,897 | INFO     | [job] validate thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,915 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:32,999 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 19:55:07] 2026-01-10 18:54:33,331 | INFO     | [job] control thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:33,569 | INFO     | [payload] failed_post thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:33,573 | INFO     | [payload] control thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:33,630 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:34,005 | INFO     | [job] queue monitor thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:34,513 | INFO     | [data] copytool_out thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:35,779 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 19:55:07] 2026-01-10 18:54:43,138 | INFO     | [monitor] cgroup control has ended
[2026-01-10 19:55:07] 2026-01-10 18:54:45,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140070146811712)>', '<ExcThread(monitor, started 140069411219200)>']
[2026-01-10 19:55:07] 2026-01-10 18:54:50,212 | INFO     | all workflow threads have been joined
[2026-01-10 19:55:07] 2026-01-10 18:54:50,213 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 19:55:07] 2026-01-10 18:54:50,213 | INFO     | traces error code: 0
[2026-01-10 19:55:07] 2026-01-10 18:54:50,213 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 19:55:07] 2026-01-10 18:55:01,307 | INFO     | PID=8962 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 19:55:07] 2026-01-10 18:55:01,307 | INFO     | .. there are 2 such processes running
[2026-01-10 19:55:07] 2026-01-10 18:55:01,308 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 19:55:07] 2026-01-10 18:55:01,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 19:55:07] 2026-01-10 18:55:01,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 19:55:07] 2026-01-10 18:55:01,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 19:55:07] 2026-01-10 18:55:01,308 | INFO     | [monitor] control thread has ended
[2026-01-10 19:55:07] 2026-01-10 18:55:01,860 [wrapper] ==== pilot stdout END ====
[2026-01-10 19:55:07] 2026-01-10 18:55:01,954 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 19:55:07] 2026-01-10 18:55:02,002 [wrapper] pilotpid: 8962
[2026-01-10 19:55:07] 2026-01-10 18:55:02,110 [wrapper] Pilot exit status: 0
[2026-01-10 19:55:07] 2026-01-10 18:55:02,551 [wrapper] pandaids: 6963378810
[2026-01-10 19:55:07] 2026-01-10 18:55:03,815 [wrapper] cleanup supervisor_pilot  7411 8963
[2026-01-10 19:55:07] 2026-01-10 18:55:03,882 [wrapper] Test setup, not cleaning
[2026-01-10 19:55:07] 2026-01-10 18:55:03,947 [wrapper] apfmon messages muted
[2026-01-10 19:55:07] 2026-01-10 18:55:04,047 [wrapper] ==== wrapper stdout END ====
[2026-01-10 19:55:07] 2026-01-10 18:55:04,128 [wrapper] ==== wrapper stderr END ====
[2026-01-10 19:55:07]  *** Error codes and diagnostics ***
[2026-01-10 19:55:07]     "exeErrorCode": 0,
[2026-01-10 19:55:07]     "exeErrorDiag": "",
[2026-01-10 19:55:07]     "pilotErrorCode": 0,
[2026-01-10 19:55:07]     "pilotErrorDiag": "",
[2026-01-10 19:55:07]  *** Listing of results directory ***
[2026-01-10 19:55:07] total 1190152
[2026-01-10 19:55:07] -rwx------. 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:21 queuedata.json
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc       100 Jan  9 20:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 19:55:07] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 20:10 run_atlas
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc       105 Jan  9 20:10 job.xml
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc      6390 Jan  9 20:10 init_data.xml
[2026-01-10 19:55:07] -rw-r--r--. 2 boinc boinc 391949667 Jan  9 20:10 EVNT.47962006._000105.pool.root.1
[2026-01-10 19:55:07] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:10 start_atlas.sh
[2026-01-10 19:55:07] drwxrwx--x. 2 boinc boinc        68 Jan  9 20:10 shared
[2026-01-10 19:55:07] -rw-r--r--. 2 boinc boinc    592621 Jan  9 20:10 input.tar.gz
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc         0 Jan  9 20:10 boinc_lockfile
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc      2892 Jan  9 20:11 pandaJob.out
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc    989372 Jan  9 20:11 agis_schedconf.cvmfs.json
[2026-01-10 19:55:07] drwx------. 5 boinc boinc      4096 Jan  9 20:11 pilot3
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc       533 Jan 10 19:24 boinc_task_state.xml
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc 795227651 Jan 10 19:51 HITS.47962010._001291.pool.root.1
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc      1034 Jan 10 19:52 memory_monitor_summary.json
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc   1516240 Jan 10 19:52 agis_ddmendpoints.agis.ALL.json
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc   2446088 Jan 10 19:52 log.47962010._001291.job.log.tgz.1
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc        95 Jan 10 19:54 pilot_heartbeat.json
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc      8619 Jan 10 19:54 heartbeat.json
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc      8192 Jan 10 19:54 boinc_mmap_file
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc        29 Jan 10 19:54 wrapper_checkpoint.txt
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc       819 Jan 10 19:55 pilotlog.txt
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc  11373567 Jan 10 19:55 log.47962010._001291.job.log.1
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc       353 Jan 10 19:55 output.list
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc       620 Jan 10 19:55 runtime_log
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc  13834240 Jan 10 19:55 result.tar.gz
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc      8817 Jan 10 19:55 runtime_log.err
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc       662 Jan 10 19:55 PDKODmQvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPQhKDmGZ9T8n.diag
[2026-01-10 19:55:07] -rw-r--r--. 1 boinc boinc     21352 Jan 10 19:55 stderr.txt
[2026-01-10 19:55:07] HITS file was successfully produced:
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc 795227651 Jan 10 19:51 shared/HITS.pool.root.1
[2026-01-10 19:55:07]  *** Contents of shared directory: ***
[2026-01-10 19:55:07] total 1173464
[2026-01-10 19:55:07] -rw-r--r--. 2 boinc boinc 391949667 Jan  9 20:10 ATLAS.root_0
[2026-01-10 19:55:07] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:10 start_atlas.sh
[2026-01-10 19:55:07] -rw-r--r--. 2 boinc boinc    592621 Jan  9 20:10 input.tar.gz
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc 795227651 Jan 10 19:51 HITS.pool.root.1
[2026-01-10 19:55:07] -rw-------. 1 boinc boinc  13834240 Jan 10 19:55 result.tar.gz
19:55:08 (5228): run_atlas exited; CPU time 359280.080937
19:55:08 (5228): called boinc_finish(0)

</stderr_txt>
]]>

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