Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:05:53 (866034): wrapper (7.7.26015): starting
01:05:53 (866034): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 01:05:53] Arguments: --nthreads 4
[2026-01-10 01:05:53] Threads: 4
[2026-01-10 01:05:53] Checking for CVMFS
[2026-01-10 01:05:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 01:05:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 01:05:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 01:05:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 01:05:54] 2.9.2.0 211398 2224 89572 154961 0 57 36574850 36864001 0 130560 0 1679059 99.989 83969 4050 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 01:05:54] CVMFS is ok
[2026-01-10 01:05:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 01:05:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 01:05:54] Further information can be found at the LHC@home message board.
[2026-01-10 01:05:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 01:05:54] Checking for apptainer binary...
[2026-01-10 01:05:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 01:05:54] Running /usr/bin/apptainer --version
[2026-01-10 01:05:54] apptainer version 1.4.1-1.1
[2026-01-10 01:05:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 01:05:54] thA381
[2026-01-10 01:05:54] apptainer works
[2026-01-10 01:05:54] Set ATHENA_PROC_NUMBER=4
[2026-01-10 01:05:54] Set ATHENA_CORE_NUMBER=4
[2026-01-10 01:05:54] Starting ATLAS job with PandaID=6963197122
[2026-01-10 01:05:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:48:26]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:48:26] 2026-01-10 03:47:59,884 | INFO     | process IDs to be killed: [876410] (in reverse order)
[2026-01-10 04:48:26] 2026-01-10 03:47:59,917 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:48:26] 2026-01-10 03:47:59,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:48:26] 2026-01-10 03:47:59,919 | INFO     | did not find any defunct processes belonging to 876410
[2026-01-10 04:48:26] 2026-01-10 03:47:59,920 | INFO     | did not find any defunct processes belonging to 876410
[2026-01-10 04:48:26] 2026-01-10 03:47:59,920 | INFO     | ready for new job
[2026-01-10 04:48:26] 2026-01-10 03:47:59,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:48:26] 2026-01-10 03:47:59,921 | INFO     | ***************************************
[2026-01-10 04:48:26] 2026-01-10 03:47:59,921 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:48:26] 2026-01-10 03:47:59,921 | INFO     | ***************************************
[2026-01-10 04:48:26] 2026-01-10 03:47:59,921 | INFO     | 
[2026-01-10 04:48:26] 2026-01-10 03:47:59,922 | INFO     | architecture information:
[2026-01-10 04:48:26] 2026-01-10 03:47:59,922 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:48:26] 2026-01-10 03:47:59,937 | INFO     | cat /etc/os-release:
[2026-01-10 04:48:26] NAME="CentOS Linux"
[2026-01-10 04:48:26] VERSION="7 (Core)"
[2026-01-10 04:48:26] ID="centos"
[2026-01-10 04:48:26] ID_LIKE="rhel fedora"
[2026-01-10 04:48:26] VERSION_ID="7"
[2026-01-10 04:48:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:48:26] ANSI_COLOR="0;31"
[2026-01-10 04:48:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:48:26] HOME_URL="https://www.centos.org/"
[2026-01-10 04:48:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:48:26] 
[2026-01-10 04:48:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:48:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:48:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:48:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:48:26] 
[2026-01-10 04:48:26] 2026-01-10 03:47:59,937 | INFO     | ***************************************
[2026-01-10 04:48:26] 2026-01-10 03:48:00,440 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 04:48:26] 2026-01-10 03:48:00,458 | INFO     | sufficient remaining disk space (223568986112 B)
[2026-01-10 04:48:26] 2026-01-10 03:48:00,458 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | INFO     | update_server=False
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:48:26] 2026-01-10 03:48:00,459 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:48:26] 2026-01-10 03:48:00,460 | INFO     | aborting loop
[2026-01-10 04:48:26] 2026-01-10 03:48:00,460 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:48:26] 2026-01-10 03:48:00,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:48:26] 2026-01-10 03:48:00,731 | INFO     | all data control threads have been joined
[2026-01-10 04:48:26] 2026-01-10 03:48:01,464 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:01,465 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:01,465 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:01,737 | INFO     | [data] control thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:01,739 | INFO     | all payload control threads have been joined
[2026-01-10 04:48:26] 2026-01-10 03:48:01,881 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:01,908 | INFO     | [job] validate thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:01,926 | INFO     | all job control threads have been joined
[2026-01-10 04:48:26] 2026-01-10 03:48:02,130 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,224 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,465 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,534 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:48:26] 2026-01-10 03:48:02,683 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,745 | INFO     | [payload] control thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,824 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,831 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,836 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:02,932 | INFO     | [job] control thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:06,541 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:48:26] 2026-01-10 03:48:19,357 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:48:26] 2026-01-10 03:48:21,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140202117363520)>', '<ExcThread(monitor, started 140201330460416)>']
[2026-01-10 04:48:26] 2026-01-10 03:48:21,568 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:48:26] 2026-01-10 03:48:21,568 | INFO     | [monitor] control thread has ended
[2026-01-10 04:48:26] 2026-01-10 03:48:26,132 | INFO     | all workflow threads have been joined
[2026-01-10 04:48:26] 2026-01-10 03:48:26,132 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:48:26] 2026-01-10 03:48:26,133 | INFO     | traces error code: 0
[2026-01-10 04:48:26] 2026-01-10 03:48:26,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:48:26] 2026-01-10 03:48:26,212 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:48:26] 2026-01-10 03:48:26,216 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:48:26] 2026-01-10 03:48:26,220 [wrapper] pilotpid: 869827
[2026-01-10 04:48:26] 2026-01-10 03:48:26,225 [wrapper] Pilot exit status: 0
[2026-01-10 04:48:26] 2026-01-10 03:48:26,237 [wrapper] pandaids: 6963197122
[2026-01-10 04:48:26] 2026-01-10 03:48:26,259 [wrapper] cleanup supervisor_pilot  901364 869828
[2026-01-10 04:48:26] 2026-01-10 03:48:26,264 [wrapper] Test setup, not cleaning
[2026-01-10 04:48:26] 2026-01-10 03:48:26,267 [wrapper] apfmon messages muted
[2026-01-10 04:48:26] 2026-01-10 03:48:26,271 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:48:26] 2026-01-10 03:48:26,275 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:48:26]  *** Error codes and diagnostics ***
[2026-01-10 04:48:26]     "exeErrorCode": 0,
[2026-01-10 04:48:26]     "exeErrorDiag": "",
[2026-01-10 04:48:26]     "pilotErrorCode": 0,
[2026-01-10 04:48:26]     "pilotErrorDiag": "",
[2026-01-10 04:48:26]  *** Listing of results directory ***
[2026-01-10 04:48:26] total 766972
[2026-01-10 04:48:26] -rwx------ 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc      5112 Jan  9 08:20 queuedata.json
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc       100 Jan 10 01:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:48:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 01:05 run_atlas
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc       105 Jan 10 01:05 job.xml
[2026-01-10 04:48:26] -rw-r--r-- 2 boinc boinc 391722418 Jan 10 01:05 EVNT.47962006._000066.pool.root.1
[2026-01-10 04:48:26] -rw-r--r-- 2 boinc boinc    592612 Jan 10 01:05 input.tar.gz
[2026-01-10 04:48:26] -rw-r--r-- 2 boinc boinc     15847 Jan 10 01:05 start_atlas.sh
[2026-01-10 04:48:26] drwxrwx--x 2 boinc boinc      4096 Jan 10 01:05 shared
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc         0 Jan 10 01:05 boinc_setup_complete
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc      6376 Jan 10 01:05 init_data.xml
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc         0 Jan 10 01:05 boinc_lockfile
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc      2891 Jan 10 01:05 pandaJob.out
[2026-01-10 04:48:26] -rw------- 1 boinc boinc    989374 Jan 10 01:06 agis_schedconf.cvmfs.json
[2026-01-10 04:48:26] drwx------ 5 boinc boinc      4096 Jan 10 01:06 pilot3
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc       532 Jan 10 04:42 boinc_task_state.xml
[2026-01-10 04:48:26] -rw------- 1 boinc boinc        95 Jan 10 04:47 pilot_heartbeat.json
[2026-01-10 04:48:26] -rw------- 1 boinc boinc 383970631 Jan 10 04:47 HITS.47962010._000795.pool.root.1
[2026-01-10 04:48:26] -rw------- 1 boinc boinc      1021 Jan 10 04:47 memory_monitor_summary.json
[2026-01-10 04:48:26] -rw------- 1 boinc boinc   1516240 Jan 10 04:47 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:48:26] -rw------- 1 boinc boinc    988936 Jan 10 04:47 log.47962010._000795.job.log.tgz.1
[2026-01-10 04:48:26] -rw------- 1 boinc boinc      8568 Jan 10 04:47 heartbeat.json
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc      8192 Jan 10 04:48 boinc_mmap_file
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc        28 Jan 10 04:48 wrapper_checkpoint.txt
[2026-01-10 04:48:26] -rw------- 1 boinc boinc      4556 Jan 10 04:48 pilotlog.txt
[2026-01-10 04:48:26] -rw------- 1 boinc boinc   1900707 Jan 10 04:48 log.47962010._000795.job.log.1
[2026-01-10 04:48:26] -rw------- 1 boinc boinc       353 Jan 10 04:48 output.list
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc       620 Jan 10 04:48 runtime_log
[2026-01-10 04:48:26] -rw------- 1 boinc boinc   2908160 Jan 10 04:48 result.tar.gz
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc      8898 Jan 10 04:48 runtime_log.err
[2026-01-10 04:48:26] -rw------- 1 boinc boinc       664 Jan 10 04:48 cuBMDmFvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiPhKDmnPytIn.diag
[2026-01-10 04:48:26] -rw-r--r-- 1 boinc boinc      9997 Jan 10 04:48 stderr.txt
[2026-01-10 04:48:26] HITS file was successfully produced:
[2026-01-10 04:48:26] -rw------- 1 boinc boinc 383970631 Jan 10 04:47 shared/HITS.pool.root.1
[2026-01-10 04:48:26]  *** Contents of shared directory: ***
[2026-01-10 04:48:26] total 760960
[2026-01-10 04:48:26] -rw-r--r-- 2 boinc boinc 391722418 Jan 10 01:05 ATLAS.root_0
[2026-01-10 04:48:26] -rw-r--r-- 2 boinc boinc    592612 Jan 10 01:05 input.tar.gz
[2026-01-10 04:48:26] -rw-r--r-- 2 boinc boinc     15847 Jan 10 01:05 start_atlas.sh
[2026-01-10 04:48:26] -rw------- 1 boinc boinc 383970631 Jan 10 04:47 HITS.pool.root.1
[2026-01-10 04:48:26] -rw------- 1 boinc boinc   2908160 Jan 10 04:48 result.tar.gz
04:48:28 (866034): run_atlas exited; CPU time 50936.184437
04:48:28 (866034): called boinc_finish(0)

</stderr_txt>
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