Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:21:24 (1199763): wrapper (7.7.26015): starting
11:21:24 (1199763): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 11:21:24] Arguments: --nthreads 8
[2026-01-09 11:21:24] Threads: 8
[2026-01-09 11:21:24] Checking for CVMFS
[2026-01-09 11:21:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:21:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:21:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:21:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:21:25] 2.13.3.0 7268 23116 215980 154950 3 365 40436473 40960001 25551 16776704 0 55950754 99.658 52918658 39181 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 11:21:25] CVMFS is ok
[2026-01-09 11:21:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:21:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:21:25] Further information can be found at the LHC@home message board.
[2026-01-09 11:21:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:21:25] Checking for apptainer binary...
[2026-01-09 11:21:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:21:25] Running /usr/bin/apptainer --version
[2026-01-09 11:21:25] apptainer version 1.4.5-2.el9
[2026-01-09 11:21:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:21:26] c-212-18.aglt2.org
[2026-01-09 11:21:26] apptainer works
[2026-01-09 11:21:26] Set ATHENA_PROC_NUMBER=8
[2026-01-09 11:21:26] Set ATHENA_CORE_NUMBER=8
[2026-01-09 11:21:26] Starting ATLAS job with PandaID=6963169988
[2026-01-09 11:21:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:40:08 (1199763): BOINC client no longer exists - exiting
23:40:08 (1199763): timer handler: client dead, exiting
23:46:48 (204993): wrapper (7.7.26015): starting
23:46:48 (204993): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 23:46:48] Arguments: --nthreads 8
[2026-01-09 23:46:48] Threads: 8
[2026-01-09 23:46:48] This job has been restarted, cleaning up previous attempt
[2026-01-09 23:46:48] Checking for CVMFS
[2026-01-09 23:46:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:46:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:46:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:46:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:46:48] 2.13.3.0 7268 23861 214664 154968 3 386 33159053 40960000 21706 16776704 0 57987114 99.659 54069840 38992 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 23:46:48] CVMFS is ok
[2026-01-09 23:46:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:46:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:46:48] Further information can be found at the LHC@home message board.
[2026-01-09 23:46:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:46:48] Checking for apptainer binary...
[2026-01-09 23:46:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:46:48] Running /usr/bin/apptainer --version
[2026-01-09 23:46:48] apptainer version 1.4.5-2.el9
[2026-01-09 23:46:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:46:49] c-212-18.aglt2.org
[2026-01-09 23:46:49] apptainer works
[2026-01-09 23:46:49] Set ATHENA_PROC_NUMBER=8
[2026-01-09 23:46:49] Set ATHENA_CORE_NUMBER=8
[2026-01-09 23:46:49] Starting ATLAS job with PandaID=6963169988
[2026-01-09 23:46:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:38:29]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:38:29] 2026-01-10 18:37:26,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:38:29] 2026-01-10 18:37:26,881 | INFO     | job 6963169988 has state=finished
[2026-01-10 13:38:29] 2026-01-10 18:37:26,882 | INFO     | preparing for final server update for job 6963169988 in state='finished'
[2026-01-10 13:38:29] 2026-01-10 18:37:26,882 | INFO     | this job has now completed (state=finished)
[2026-01-10 13:38:29] 2026-01-10 18:37:26,883 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 13:38:29] 2026-01-10 18:37:26,883 | INFO     | log transfer has been attempted: DONE
[2026-01-10 13:38:29] 2026-01-10 18:37:26,883 | INFO     | job 6963169988 has finished - writing final server update
[2026-01-10 13:38:29] 2026-01-10 18:37:26,883 | INFO     | total number of processed events: 450 (read)
[2026-01-10 13:38:29] 2026-01-10 18:37:26,897 | INFO     | executing command: lscpu
[2026-01-10 13:38:29] 2026-01-10 18:37:26,983 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 13:38:29] 2026-01-10 18:37:27,338 | INFO     | time since job start (49827s) is within the limit (349056.0s)
[2026-01-10 13:38:29] 2026-01-10 18:37:29,185 | INFO     | monitor loop #3463: job 0:6963169988 is in state 'finished'
[2026-01-10 13:38:29] 2026-01-10 18:37:29,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:38:29] 2026-01-10 18:37:29,343 | INFO     | time since job start (49829s) is within the limit (349056.0s)
[2026-01-10 13:38:29] 2026-01-10 18:37:31,348 | INFO     | time since job start (49831s) is within the limit (349056.0s)
[2026-01-10 13:38:29] 2026-01-10 18:37:31,688 | INFO     | monitor loop #3464: job 0:6963169988 is in state 'finished'
[2026-01-10 13:38:29] 2026-01-10 18:37:31,688 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 13:38:29] 2026-01-10 18:37:32,721 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 13:38:29] 2026-01-10 18:37:32,734 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3274.440114583333
[2026-01-10 13:38:29] 2026-01-10 18:37:32,747 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6963169988/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 13:38:29] 2026-01-10 18:37:32,748 | INFO     | extracted standard info from prmon json
[2026-01-10 13:38:29] 2026-01-10 18:37:32,748 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 13:38:29] 2026-01-10 18:37:32,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 13:38:29] 2026-01-10 18:37:32,759 | INFO     | fitting pss+swap vs Time
[2026-01-10 13:38:29] 2026-01-10 18:37:32,760 | INFO     | sum of square deviations: 169103328222.2498
[2026-01-10 13:38:29] 2026-01-10 18:37:32,789 | INFO     | sum of deviations: 4529346998295.597
[2026-01-10 13:38:29] 2026-01-10 18:37:32,789 | INFO     | mean x: 1768045335.500612
[2026-01-10 13:38:29] 2026-01-10 18:37:32,789 | INFO     | mean y: 3396651.805385557
[2026-01-10 13:38:29] 2026-01-10 18:37:32,789 | INFO     | intersect: -47352802172.828766
[2026-01-10 13:38:29] 2026-01-10 18:37:32,790 | INFO     | chi2: 11.258062314186144
[2026-01-10 13:38:29] 2026-01-10 18:37:32,791 | INFO     | sum of square deviations: 166017757900.98874
[2026-01-10 13:38:29] 2026-01-10 18:37:32,802 | INFO     | sum of deviations: 4789683393363.977
[2026-01-10 13:38:29] 2026-01-10 18:37:32,802 | INFO     | mean x: 1768045183.0036945
[2026-01-10 13:38:29] 2026-01-10 18:37:32,803 | INFO     | mean y: 3409502.339901478
[2026-01-10 13:38:29] 2026-01-10 18:37:32,803 | INFO     | intersect: -51005450988.35784
[2026-01-10 13:38:29] 2026-01-10 18:37:32,803 | INFO     | chi2: 8.489832788278937
[2026-01-10 13:38:29] 2026-01-10 18:37:32,808 | INFO     | current chi2=8.489832788278937 (change=24.588863062331747 %)
[2026-01-10 13:38:29] 2026-01-10 18:37:32,808 | INFO     | right removable region: 811
[2026-01-10 13:38:29] 2026-01-10 18:37:32,808 | INFO     | sum of square deviations: 166017508410.98865
[2026-01-10 13:38:29] 2026-01-10 18:37:32,819 | INFO     | sum of deviations: 4211939326423.8877
[2026-01-10 13:38:29] 2026-01-10 18:37:32,820 | INFO     | mean x: 1768045488.0036945
[2026-01-10 13:38:29] 2026-01-10 18:37:32,820 | INFO     | mean y: 3412326.7044334975
[2026-01-10 13:38:29] 2026-01-10 18:37:32,820 | INFO     | intersect: -44852701905.49884
[2026-01-10 13:38:29] 2026-01-10 18:37:32,821 | INFO     | chi2: 8.687583719963767
[2026-01-10 13:38:29] 2026-01-10 18:37:32,821 | INFO     | current chi2=8.687583719963767 (change=22.832335818423648 %)
[2026-01-10 13:38:29] 2026-01-10 18:37:32,821 | INFO     | left removable region: 10
[2026-01-10 13:38:29] 2026-01-10 18:37:32,821 | INFO     | sum of square deviations: 159361620654.15976
[2026-01-10 13:38:29] 2026-01-10 18:37:32,832 | INFO     | sum of deviations: 4331901927394.7056
[2026-01-10 13:38:29] 2026-01-10 18:37:32,832 | INFO     | mean x: 1768045457.5106118
[2026-01-10 13:38:29] 2026-01-10 18:37:32,833 | INFO     | mean y: 3432109.2109862673
[2026-01-10 13:38:29] 2026-01-10 18:37:32,833 | INFO     | intersect: -48057070122.58376
[2026-01-10 13:38:29] 2026-01-10 18:37:32,834 | INFO     | chi2: 5.770119613447568
[2026-01-10 13:38:29] 2026-01-10 18:37:32,834 | INFO     | current memory leak: 27.18 B/s (using 801 data points, chi2=5.77)
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | could have reported an average CPU frequency of 3335 MHz (31 samples)
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | ..............................
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . Timing measurements:
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . get job = 0 s
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . initial setup = 2 s
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . payload setup = 6 s
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . stage-in = 0 s
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . payload execution = 49798 s
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . stage-out = 2 s
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | . log creation = 0 s
[2026-01-10 13:38:29] 2026-01-10 18:37:32,835 | INFO     | ..............................
[2026-01-10 13:38:29] 2026-01-10 18:37:33,073 | INFO     | 
[2026-01-10 13:38:29] 2026-01-10 18:37:33,073 | INFO     | job summary report
[2026-01-10 13:38:29] 2026-01-10 18:37:33,073 | INFO     | --------------------------------------------------
[2026-01-10 13:38:29] 2026-01-10 18:37:33,073 | INFO     | PanDA job id: 6963169988
[2026-01-10 13:38:29] 2026-01-10 18:37:33,073 | INFO     | task id: 47962010
[2026-01-10 13:38:29] 2026-01-10 18:37:33,073 | INFO     | errors: (none)
[2026-01-10 13:38:29] 2026-01-10 18:37:33,073 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | pilot state: finished 
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | transexitcode: 0
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | exeerrorcode: 0
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | exeerrordiag: 
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | exitcode: 0
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | exitmsg: OK
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | cpuconsumptiontime: 98031 s
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | nevents: 450
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | neventsw: 0
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | pid: 262210
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | pgrp: 262210
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | corecount: 8
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | event service: False
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | sizes: {0: 2284620, 4: 2284882, 11: 2284910, 49808: 2332911, 49811: 2341905, 49812: 2341961, 49818: 2342335}
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | --------------------------------------------------
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | 
[2026-01-10 13:38:29] 2026-01-10 18:37:33,074 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-10 13:38:29] 2026-01-10 18:37:33,103 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,103 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,105 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:38:29] 2026-01-10 18:37:33,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,105 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:38:29] 2026-01-10 18:37:33,105 | INFO     | job 6963169988 has completed (purged errors)
[2026-01-10 13:38:29] 2026-01-10 18:37:33,105 | INFO     | overall cleanup function is called
[2026-01-10 13:38:29] 2026-01-10 18:37:34,120 | INFO     | --- collectZombieJob: --- 10, [262210]
[2026-01-10 13:38:29] 2026-01-10 18:37:34,120 | INFO     | zombie collector waiting for pid 262210
[2026-01-10 13:38:29] 2026-01-10 18:37:34,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:38:29] 2026-01-10 18:37:34,120 | INFO     | collected zombie processes
[2026-01-10 13:38:29] 2026-01-10 18:37:34,120 | INFO     | will attempt to kill all subprocesses of pid=262210
[2026-01-10 13:38:29] 2026-01-10 18:37:34,504 | INFO     | process IDs to be killed: [262210] (in reverse order)
[2026-01-10 13:38:29] 2026-01-10 18:37:34,672 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:38:29] 2026-01-10 18:37:34,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:38:29] 2026-01-10 18:37:34,692 | INFO     | did not find any defunct processes belonging to 262210
[2026-01-10 13:38:29] 2026-01-10 18:37:34,711 | INFO     | did not find any defunct processes belonging to 262210
[2026-01-10 13:38:29] 2026-01-10 18:37:34,711 | INFO     | ready for new job
[2026-01-10 13:38:29] 2026-01-10 18:37:34,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:38:29] 2026-01-10 18:37:34,715 | INFO     | ***************************************
[2026-01-10 13:38:29] 2026-01-10 18:37:34,715 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:38:29] 2026-01-10 18:37:34,715 | INFO     | ***************************************
[2026-01-10 13:38:29] 2026-01-10 18:37:34,715 | INFO     | 
[2026-01-10 13:38:29] 2026-01-10 18:37:34,720 | INFO     | architecture information:
[2026-01-10 13:38:29] 2026-01-10 18:37:34,721 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:38:29] 2026-01-10 18:37:34,741 | INFO     | cat /etc/os-release:
[2026-01-10 13:38:29] NAME="CentOS Linux"
[2026-01-10 13:38:29] VERSION="7 (Core)"
[2026-01-10 13:38:29] ID="centos"
[2026-01-10 13:38:29] ID_LIKE="rhel fedora"
[2026-01-10 13:38:29] VERSION_ID="7"
[2026-01-10 13:38:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:38:29] ANSI_COLOR="0;31"
[2026-01-10 13:38:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:38:29] HOME_URL="https://www.centos.org/"
[2026-01-10 13:38:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:38:29] 
[2026-01-10 13:38:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:38:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:38:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:38:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:38:29] 
[2026-01-10 13:38:29] 2026-01-10 18:37:34,741 | INFO     | ***************************************
[2026-01-10 13:38:29] 2026-01-10 18:37:35,247 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-10 13:38:29] 2026-01-10 18:37:35,267 | INFO     | sufficient remaining disk space (126581997568 B)
[2026-01-10 13:38:29] 2026-01-10 18:37:35,268 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:38:29] 2026-01-10 18:37:35,268 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:38:29] 2026-01-10 18:37:35,268 | INFO     | update_server=False
[2026-01-10 13:38:29] 2026-01-10 18:37:35,268 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:38:29] 2026-01-10 18:37:35,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:38:29] 2026-01-10 18:37:35,269 | INFO     | aborting loop
[2026-01-10 13:38:29] 2026-01-10 18:37:35,333 | INFO     | all payload control threads have been joined
[2026-01-10 13:38:29] 2026-01-10 18:37:35,545 | INFO     | all data control threads have been joined
[2026-01-10 13:38:29] 2026-01-10 18:37:35,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:38:29] 2026-01-10 18:37:36,271 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:36,281 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:36,339 | INFO     | [payload] control thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:36,516 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:36,551 | INFO     | [data] control thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:36,733 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:36,754 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:36,893 | INFO     | all job control threads have been joined
[2026-01-10 13:38:29] 2026-01-10 18:37:36,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:38:29] 2026-01-10 18:37:37,183 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:37,304 | INFO     | [job] validate thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:37,611 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:37,659 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:37,732 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:37,899 | INFO     | [job] control thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:37,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:38:29] 2026-01-10 18:37:38,926 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:41,004 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:37:45,548 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:38:29] 2026-01-10 18:37:46,554 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:38:29] 2026-01-10 18:38:04,902 | INFO     | PID=224100 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 13:38:29] 2026-01-10 18:38:04,902 | INFO     | .. there are 27 such processes running
[2026-01-10 13:38:29] 2026-01-10 18:38:04,902 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:38:29] 2026-01-10 18:38:04,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:38:29] 2026-01-10 18:38:04,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:38:29] 2026-01-10 18:38:23,209 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:38:29] 2026-01-10 18:38:24,039 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140296844097344)>', '<ExcThread(monitor, started 140296465651456)>']
[2026-01-10 13:38:29] 2026-01-10 18:38:25,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:38:29] 2026-01-10 18:38:25,016 | INFO     | [monitor] control thread has ended
[2026-01-10 13:38:29] 2026-01-10 18:38:29,065 | INFO     | all workflow threads have been joined
[2026-01-10 13:38:29] 2026-01-10 18:38:29,067 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:38:29] 2026-01-10 18:38:29,068 | INFO     | traces error code: 0
[2026-01-10 13:38:29] 2026-01-10 18:38:29,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:38:29] 2026-01-10 18:38:29,212 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:38:29] 2026-01-10 18:38:29,216 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:38:29] 2026-01-10 18:38:29,219 [wrapper] pilotpid: 224100
[2026-01-10 13:38:29] 2026-01-10 18:38:29,222 [wrapper] Pilot exit status: 0
[2026-01-10 13:38:29] 2026-01-10 18:38:29,233 [wrapper] pandaids: 6963169988 6963169988
[2026-01-10 13:38:29] 2026-01-10 18:38:29,344 [wrapper] cleanup supervisor_pilot  979378 224102
[2026-01-10 13:38:29] 2026-01-10 18:38:29,347 [wrapper] Test setup, not cleaning
[2026-01-10 13:38:29] 2026-01-10 18:38:29,350 [wrapper] apfmon messages muted
[2026-01-10 13:38:29] 2026-01-10 18:38:29,352 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:38:29] 2026-01-10 18:38:29,354 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:38:29]  *** Error codes and diagnostics ***
[2026-01-10 13:38:29]     "exeErrorCode": 0,
[2026-01-10 13:38:29]     "exeErrorDiag": "",
[2026-01-10 13:38:29]     "pilotErrorCode": 0,
[2026-01-10 13:38:29]     "pilotErrorDiag": "",
[2026-01-10 13:38:29]  *** Listing of results directory ***
[2026-01-10 13:38:29] total 1168748
[2026-01-10 13:38:29] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 13:38:29] -rwx------. 1 boincer umatlas     36322 Jan  9 02:16 runpilot2-wrapper.sh
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:20 queuedata.json
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:20 pilot3.tar.gz
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas       100 Jan  9 11:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:38:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 11:21 run_atlas
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas       105 Jan  9 11:21 job.xml
[2026-01-10 13:38:29] -rw-r--r--. 3 boincer umatlas 390768179 Jan  9 11:21 EVNT.47962006._000052.pool.root.1
[2026-01-10 13:38:29] -rw-r--r--. 3 boincer umatlas 390768179 Jan  9 11:21 ATLAS.root_0
[2026-01-10 13:38:29] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:21 start_atlas.sh
[2026-01-10 13:38:29] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 11:21 shared
[2026-01-10 13:38:29] -rw-r--r--. 2 boincer umatlas    592612 Jan  9 11:21 input.tar.gz
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas         0 Jan  9 11:21 boinc_lockfile
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas      2891 Jan  9 23:46 pandaJob.out
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas        57 Jan  9 23:46 setup.sh.local
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas    989374 Jan  9 23:46 agis_schedconf.cvmfs.json
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas      6959 Jan 10 13:27 init_data.xml
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas       532 Jan 10 13:30 boinc_task_state.xml
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas 393948758 Jan 10 13:37 HITS.47962010._000488.pool.root.1
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas      1071 Jan 10 13:37 memory_monitor_summary.json
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas   1516240 Jan 10 13:37 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas        96 Jan 10 13:37 pilot_heartbeat.json
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas   1907280 Jan 10 13:37 log.47962010._000488.job.log.tgz.1
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas      8616 Jan 10 13:37 heartbeat.json
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 13:38 boinc_mmap_file
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas        29 Jan 10 13:38 wrapper_checkpoint.txt
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas      4896 Jan 10 13:38 pilotlog.txt
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas   6790437 Jan 10 13:38 log.47962010._000488.job.log.1
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas       353 Jan 10 13:38 output.list
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas       620 Jan 10 13:38 runtime_log
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas   8714240 Jan 10 13:38 result.tar.gz
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas       790 Jan 10 13:38 VKkMDm3uLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfZmKDmYuZRum.diag
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas      9428 Jan 10 13:38 runtime_log.err
[2026-01-10 13:38:29] -rw-r--r--. 1 boincer umatlas     23866 Jan 10 13:38 stderr.txt
[2026-01-10 13:38:29] HITS file was successfully produced:
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas 393948758 Jan 10 13:37 shared/HITS.pool.root.1
[2026-01-10 13:38:29]  *** Contents of shared directory: ***
[2026-01-10 13:38:29] total 775440
[2026-01-10 13:38:29] -rw-r--r--. 3 boincer umatlas 390768179 Jan  9 11:21 ATLAS.root_0
[2026-01-10 13:38:29] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 11:21 start_atlas.sh
[2026-01-10 13:38:29] -rw-r--r--. 2 boincer umatlas    592612 Jan  9 11:21 input.tar.gz
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas 393948758 Jan 10 13:37 HITS.pool.root.1
[2026-01-10 13:38:29] -rw-------. 1 boincer umatlas   8714240 Jan 10 13:38 result.tar.gz
13:38:52 (204993): run_atlas exited; CPU time 98402.731183
13:38:52 (204993): called boinc_finish(0)

</stderr_txt>
]]>

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