Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:04:25 (30861): wrapper (7.7.26015): starting
20:04:25 (30861): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 20:04:25] Arguments: --nthreads 8
[2026-01-09 20:04:25] Threads: 8
[2026-01-09 20:04:25] Checking for CVMFS
[2026-01-09 20:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:04:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:04:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:04:26] 2.11.2.0 24551 35810 120160 154954 3 9 24876720 25165824 0 130560 0 15560411 99.802 10865376 3463 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 20:04:26] CVMFS is ok
[2026-01-09 20:04:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:04:26] Checking for apptainer binary...
[2026-01-09 20:04:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:04:26] Running /usr/bin/apptainer --version
[2026-01-09 20:04:26] apptainer version 1.3.2-1.el7
[2026-01-09 20:04:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:04:27] cg-vwn415.simple-grid.lan
[2026-01-09 20:04:27] apptainer works
[2026-01-09 20:04:27] Set ATHENA_PROC_NUMBER=8
[2026-01-09 20:04:27] Set ATHENA_CORE_NUMBER=8
[2026-01-09 20:04:27] Starting ATLAS job with PandaID=6963186826
[2026-01-09 20:04:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:01:09]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:01:09] 2026-01-09 22:00:07,400 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:01:09] 2026-01-09 22:00:07,401 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 23:01:09] 2026-01-09 22:00:07,403 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6963186826/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,403 | INFO     | extracted standard info from prmon json
[2026-01-09 23:01:09] 2026-01-09 22:00:07,404 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:01:09] 2026-01-09 22:00:07,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:01:09] 2026-01-09 22:00:07,404 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:01:09] 2026-01-09 22:00:07,404 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:01:09] 2026-01-09 22:00:07,408 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:01:09] 2026-01-09 22:00:07,409 | INFO     | sum of square deviations: 1523386702.5
[2026-01-09 23:01:09] 2026-01-09 22:00:07,410 | INFO     | sum of deviations: 20358464886.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,410 | INFO     | mean x: 1767990665.5
[2026-01-09 23:01:09] 2026-01-09 22:00:07,410 | INFO     | mean y: 2458672.435294118
[2026-01-09 23:01:09] 2026-01-09 22:00:07,410 | INFO     | intersect: -23624881531.65679
[2026-01-09 23:01:09] 2026-01-09 22:00:07,411 | INFO     | chi2: 2.1641346747375314
[2026-01-09 23:01:09] 2026-01-09 22:00:07,411 | INFO     | sum of square deviations: 1392881930.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,412 | INFO     | sum of deviations: 30718600454.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,412 | INFO     | mean x: 1767990513.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,413 | INFO     | mean y: 2470464.381818182
[2026-01-09 23:01:09] 2026-01-09 22:00:07,413 | INFO     | intersect: -38988769931.21258
[2026-01-09 23:01:09] 2026-01-09 22:00:07,413 | INFO     | chi2: 1.3855896619021162
[2026-01-09 23:01:09] 2026-01-09 22:00:07,413 | INFO     | current chi2=1.3855896619021162 (change=35.97488741914077 %)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,413 | INFO     | sum of square deviations: 1270051720.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,415 | INFO     | sum of deviations: 29597866547.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,415 | INFO     | mean x: 1767990360.5
[2026-01-09 23:01:09] 2026-01-09 22:00:07,415 | INFO     | mean y: 2469072.5
[2026-01-09 23:01:09] 2026-01-09 22:00:07,415 | INFO     | intersect: -41199587444.1129
[2026-01-09 23:01:09] 2026-01-09 22:00:07,415 | INFO     | chi2: 1.3860876263577926
[2026-01-09 23:01:09] 2026-01-09 22:00:07,416 | INFO     | current chi2=1.3860876263577926 (change=-0.03593881142219298 %)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,416 | INFO     | right removable region: 159
[2026-01-09 23:01:09] 2026-01-09 22:00:07,416 | INFO     | sum of square deviations: 1392881930.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,417 | INFO     | sum of deviations: -3800031355.999998
[2026-01-09 23:01:09] 2026-01-09 22:00:07,417 | INFO     | mean x: 1767990818.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,418 | INFO     | mean y: 2486491.824242424
[2026-01-09 23:01:09] 2026-01-09 22:00:07,418 | INFO     | intersect: 4825882072.467669
[2026-01-09 23:01:09] 2026-01-09 22:00:07,418 | INFO     | chi2: 0.8058162119197607
[2026-01-09 23:01:09] 2026-01-09 22:00:07,418 | INFO     | current chi2=0.8058162119197607 (change=62.7649692356835 %)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,419 | INFO     | sum of square deviations: 1270051720.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,420 | INFO     | sum of deviations: -5686569907.5
[2026-01-09 23:01:09] 2026-01-09 22:00:07,420 | INFO     | mean x: 1767990970.5
[2026-01-09 23:01:09] 2026-01-09 22:00:07,420 | INFO     | mean y: 2488834.09375
[2026-01-09 23:01:09] 2026-01-09 22:00:07,420 | INFO     | intersect: 7918547756.14853
[2026-01-09 23:01:09] 2026-01-09 22:00:07,420 | INFO     | chi2: 0.8021288300665744
[2026-01-09 23:01:09] 2026-01-09 22:00:07,421 | INFO     | current chi2=0.8021288300665744 (change=0.45759588832316284 %)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,421 | INFO     | left removable region: 20
[2026-01-09 23:01:09] 2026-01-09 22:00:07,421 | INFO     | sum of square deviations: 832722590.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,422 | INFO     | sum of deviations: 2565599000.0000005
[2026-01-09 23:01:09] 2026-01-09 22:00:07,422 | INFO     | mean x: 1767990940.0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,422 | INFO     | mean y: 2504804.510791367
[2026-01-09 23:01:09] 2026-01-09 22:00:07,423 | INFO     | intersect: -5444634305.373403
[2026-01-09 23:01:09] 2026-01-09 22:00:07,423 | INFO     | chi2: 0.0002382529708441224
[2026-01-09 23:01:09] 2026-01-09 22:00:07,423 | INFO     | current memory leak: 3.08 B/s (using 139 data points, chi2=0.00)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,424 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,424 | INFO     | ..............................
[2026-01-09 23:01:09] 2026-01-09 22:00:07,424 | INFO     | . Timing measurements:
[2026-01-09 23:01:09] 2026-01-09 22:00:07,424 | INFO     | . get job = 0 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,424 | INFO     | . initial setup = 1 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,424 | INFO     | . payload setup = 6 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,424 | INFO     | . stage-in = 0 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,425 | INFO     | . payload execution = 10375 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,425 | INFO     | . stage-out = 3 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,425 | INFO     | . log creation = 1 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,425 | INFO     | ..............................
[2026-01-09 23:01:09] 2026-01-09 22:00:07,593 | INFO     | 
[2026-01-09 23:01:09] 2026-01-09 22:00:07,594 | INFO     | job summary report
[2026-01-09 23:01:09] 2026-01-09 22:00:07,594 | INFO     | --------------------------------------------------
[2026-01-09 23:01:09] 2026-01-09 22:00:07,594 | INFO     | PanDA job id: 6963186826
[2026-01-09 23:01:09] 2026-01-09 22:00:07,594 | INFO     | task id: 47898826
[2026-01-09 23:01:09] 2026-01-09 22:00:07,594 | INFO     | errors: (none)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,594 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | pilot state: finished 
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | transexitcode: 0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | exeerrorcode: 0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | exeerrordiag: 
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | exitcode: 0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | exitmsg: OK
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | cpuconsumptiontime: 76821 s
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | nevents: 400
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | neventsw: 0
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | pid: 8630
[2026-01-09 23:01:09] 2026-01-09 22:00:07,595 | INFO     | pgrp: 8630
[2026-01-09 23:01:09] 2026-01-09 22:00:07,596 | INFO     | corecount: 8
[2026-01-09 23:01:09] 2026-01-09 22:00:07,596 | INFO     | event service: False
[2026-01-09 23:01:09] 2026-01-09 22:00:07,596 | INFO     | sizes: {0: 2283799, 1: 2283998, 5: 2284260, 12: 2284316, 10387: 2312798, 10391: 2321796, 10394: 2321980, 10510: 2322238}
[2026-01-09 23:01:09] 2026-01-09 22:00:07,596 | INFO     | --------------------------------------------------
[2026-01-09 23:01:09] 2026-01-09 22:00:07,596 | INFO     | 
[2026-01-09 23:01:09] 2026-01-09 22:00:07,596 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-09 23:01:09] 2026-01-09 22:00:07,764 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,764 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,765 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,766 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,767 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,767 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:01:09] 2026-01-09 22:00:07,767 | INFO     | job 6963186826 has completed (purged errors)
[2026-01-09 23:01:09] 2026-01-09 22:00:07,767 | INFO     | overall cleanup function is called
[2026-01-09 23:01:09] 2026-01-09 22:00:08,775 | INFO     | --- collectZombieJob: --- 10, [8630]
[2026-01-09 23:01:09] 2026-01-09 22:00:08,776 | INFO     | zombie collector waiting for pid 8630
[2026-01-09 23:01:09] 2026-01-09 22:00:08,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:01:09] 2026-01-09 22:00:08,776 | INFO     | collected zombie processes
[2026-01-09 23:01:09] 2026-01-09 22:00:08,776 | INFO     | will attempt to kill all subprocesses of pid=8630
[2026-01-09 23:01:09] 2026-01-09 22:00:08,854 | INFO     | process IDs to be killed: [8630] (in reverse order)
[2026-01-09 23:01:09] 2026-01-09 22:00:09,716 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:01:09] 2026-01-09 22:00:09,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:01:09] 2026-01-09 22:00:09,719 | INFO     | did not find any defunct processes belonging to 8630
[2026-01-09 23:01:09] 2026-01-09 22:00:09,720 | INFO     | did not find any defunct processes belonging to 8630
[2026-01-09 23:01:09] 2026-01-09 22:00:09,721 | INFO     | ready for new job
[2026-01-09 23:01:09] 2026-01-09 22:00:09,721 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:01:09] 2026-01-09 22:00:09,723 | INFO     | ***************************************
[2026-01-09 23:01:09] 2026-01-09 22:00:09,723 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:01:09] 2026-01-09 22:00:09,723 | INFO     | ***************************************
[2026-01-09 23:01:09] 2026-01-09 22:00:09,723 | INFO     | 
[2026-01-09 23:01:09] 2026-01-09 22:00:09,724 | INFO     | pilot is running in a VM
[2026-01-09 23:01:09] 2026-01-09 22:00:09,724 | INFO     | architecture information:
[2026-01-09 23:01:09] 2026-01-09 22:00:09,725 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:01:09] 2026-01-09 22:00:09,985 | INFO     | cat /etc/os-release:
[2026-01-09 23:01:09] NAME="CentOS Linux"
[2026-01-09 23:01:09] VERSION="7 (Core)"
[2026-01-09 23:01:09] ID="centos"
[2026-01-09 23:01:09] ID_LIKE="rhel fedora"
[2026-01-09 23:01:09] VERSION_ID="7"
[2026-01-09 23:01:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:01:09] ANSI_COLOR="0;31"
[2026-01-09 23:01:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:01:09] HOME_URL="https://www.centos.org/"
[2026-01-09 23:01:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:01:09] 
[2026-01-09 23:01:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:01:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:01:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:01:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:01:09] 
[2026-01-09 23:01:09] 2026-01-09 22:00:09,985 | INFO     | ***************************************
[2026-01-09 23:01:09] 2026-01-09 22:00:10,489 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-09 23:01:09] 2026-01-09 22:00:10,790 | INFO     | sufficient remaining disk space (497791533056 B)
[2026-01-09 23:01:09] 2026-01-09 22:00:10,790 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:01:09] 2026-01-09 22:00:10,791 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:01:09] 2026-01-09 22:00:10,791 | INFO     | update_server=False
[2026-01-09 23:01:09] 2026-01-09 22:00:10,791 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:01:09] 2026-01-09 22:00:10,791 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:01:09] 2026-01-09 22:00:10,792 | INFO     | aborting loop
[2026-01-09 23:01:09] 2026-01-09 22:00:10,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:01:09] 2026-01-09 22:00:10,888 | INFO     | all job control threads have been joined
[2026-01-09 23:01:09] 2026-01-09 22:00:10,909 | INFO     | all data control threads have been joined
[2026-01-09 23:01:09] 2026-01-09 22:00:11,693 | INFO     | all payload control threads have been joined
[2026-01-09 23:01:09] 2026-01-09 22:00:11,797 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:11,802 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:11,895 | INFO     | [job] control thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:11,897 | INFO     | [job] validate thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:11,916 | INFO     | [data] control thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:12,085 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:12,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:01:09] 2026-01-09 22:00:12,610 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:01:09] 2026-01-09 22:00:12,683 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:12,700 | INFO     | [payload] control thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:12,824 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:12,906 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:13,077 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:13,200 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:13,617 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:14,103 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:14,806 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:20,964 | INFO     | job.realtimelogging is not enabled
[2026-01-09 23:01:09] 2026-01-09 22:00:21,970 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:01:09] 2026-01-09 22:00:39,636 | INFO     | PID=2198 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 23:01:09] 2026-01-09 22:00:39,636 | INFO     | .. there are 2 such processes running
[2026-01-09 23:01:09] 2026-01-09 22:00:39,636 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:01:09] 2026-01-09 22:00:39,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:01:09] 2026-01-09 22:00:39,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:01:09] 2026-01-09 22:00:58,941 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:01:09] 2026-01-09 22:01:00,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646426265408)>', '<ExcThread(monitor, started 140645985400576)>']
[2026-01-09 23:01:09] 2026-01-09 22:01:00,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:01:09] 2026-01-09 22:01:00,762 | INFO     | [monitor] control thread has ended
[2026-01-09 23:01:09] 2026-01-09 22:01:05,639 | INFO     | all workflow threads have been joined
[2026-01-09 23:01:09] 2026-01-09 22:01:05,640 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:01:09] 2026-01-09 22:01:05,640 | INFO     | traces error code: 0
[2026-01-09 23:01:09] 2026-01-09 22:01:05,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:01:09] 2026-01-09 22:01:06,023 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:01:09] 2026-01-09 22:01:06,142 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:01:09] 2026-01-09 22:01:06,226 [wrapper] pilotpid: 2198
[2026-01-09 23:01:09] 2026-01-09 22:01:06,293 [wrapper] Pilot exit status: 0
[2026-01-09 23:01:09] 2026-01-09 22:01:06,420 [wrapper] pandaids: 6963186826
[2026-01-09 23:01:09] 2026-01-09 22:01:06,530 [wrapper] cleanup supervisor_pilot  8773 2199
[2026-01-09 23:01:09] 2026-01-09 22:01:06,626 [wrapper] Test setup, not cleaning
[2026-01-09 23:01:09] 2026-01-09 22:01:06,735 [wrapper] apfmon messages muted
[2026-01-09 23:01:09] 2026-01-09 22:01:06,834 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:01:09] 2026-01-09 22:01:06,931 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:01:09]  *** Error codes and diagnostics ***
[2026-01-09 23:01:09]     "exeErrorCode": 0,
[2026-01-09 23:01:09]     "exeErrorDiag": "",
[2026-01-09 23:01:09]     "pilotErrorCode": 0,
[2026-01-09 23:01:09]     "pilotErrorDiag": "",
[2026-01-09 23:01:09]  *** Listing of results directory ***
[2026-01-09 23:01:09] total 444560
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 23:01:09] -rwx------. 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc       100 Jan  9 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:01:09] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 20:04 run_atlas
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc       105 Jan  9 20:04 job.xml
[2026-01-09 23:01:09] -rw-r--r--. 2 boinc boinc 223557319 Jan  9 20:04 EVNT.47898824._001408.pool.root.1
[2026-01-09 23:01:09] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:04 start_atlas.sh
[2026-01-09 23:01:09] drwxrwx--x. 2 boinc boinc        68 Jan  9 20:04 shared
[2026-01-09 23:01:09] -rw-r--r--. 2 boinc boinc    592399 Jan  9 20:04 input.tar.gz
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc      6391 Jan  9 20:04 init_data.xml
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc         0 Jan  9 20:04 boinc_lockfile
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc      2519 Jan  9 20:04 pandaJob.out
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc    989372 Jan  9 20:04 agis_schedconf.cvmfs.json
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc   1516240 Jan  9 20:04 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:01:09] drwx------. 5 boinc boinc      4096 Jan  9 20:04 pilot3
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc 224144936 Jan  9 22:56 HITS.47898826._036734.pool.root.1
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc       530 Jan  9 22:56 boinc_task_state.xml
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc      1028 Jan  9 22:58 memory_monitor_summary.json
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc    399697 Jan  9 22:58 log.47898826._036734.job.log.tgz.1
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc        95 Jan  9 22:59 pilot_heartbeat.json
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc      7776 Jan  9 23:00 heartbeat.json
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc        28 Jan  9 23:00 wrapper_checkpoint.txt
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc      8192 Jan  9 23:00 boinc_mmap_file
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc      4955 Jan  9 23:01 pilotlog.txt
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc   1416445 Jan  9 23:01 log.47898826._036734.job.log.1
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc       357 Jan  9 23:01 output.list
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc       620 Jan  9 23:01 runtime_log
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc   1832960 Jan  9 23:01 result.tar.gz
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc      8817 Jan  9 23:01 runtime_log.err
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc       657 Jan  9 23:01 QdKMDmO0Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmDggKDmg0fYKm.diag
[2026-01-09 23:01:09] -rw-r--r--. 1 boinc boinc     20665 Jan  9 23:01 stderr.txt
[2026-01-09 23:01:09] HITS file was successfully produced:
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc 224144936 Jan  9 22:56 shared/HITS.pool.root.1
[2026-01-09 23:01:09]  *** Contents of shared directory: ***
[2026-01-09 23:01:09] total 439600
[2026-01-09 23:01:09] -rw-r--r--. 2 boinc boinc 223557319 Jan  9 20:04 ATLAS.root_0
[2026-01-09 23:01:09] -rw-r--r--. 2 boinc boinc     15847 Jan  9 20:04 start_atlas.sh
[2026-01-09 23:01:09] -rw-r--r--. 2 boinc boinc    592399 Jan  9 20:04 input.tar.gz
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc 224144936 Jan  9 22:56 HITS.pool.root.1
[2026-01-09 23:01:09] -rw-------. 1 boinc boinc   1832960 Jan  9 23:01 result.tar.gz
23:01:10 (30861): run_atlas exited; CPU time 76896.884095
23:01:10 (30861): called boinc_finish(0)

</stderr_txt>
]]>

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