Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:18:45 (368108): wrapper (7.7.26015): starting
08:18:45 (368108): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 08:18:45] Arguments: --nthreads 12
[2026-01-09 08:18:45] Threads: 12
[2026-01-09 08:18:45] Checking for CVMFS
[2026-01-09 08:18:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 08:18:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 08:18:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 08:18:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 08:18:46] 2.11.5.0 3604676 56809 142316 154950 3 91 36782704 45568001 20798 130560 1 417621368 99.792 266969175 18676 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2026-01-09 08:18:46] CVMFS is ok
[2026-01-09 08:18:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 08:18:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 08:18:46] Further information can be found at the LHC@home message board.
[2026-01-09 08:18:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 08:18:46] Checking for apptainer binary...
[2026-01-09 08:18:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 08:18:46] Running /usr/bin/apptainer --version
[2026-01-09 08:18:46] apptainer version 1.4.1-1.el9
[2026-01-09 08:18:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 08:18:47] wns0034.triumf.lcg
[2026-01-09 08:18:47] apptainer works
[2026-01-09 08:18:47] Set ATHENA_PROC_NUMBER=12
[2026-01-09 08:18:47] Set ATHENA_CORE_NUMBER=12
[2026-01-09 08:18:47] Starting ATLAS job with PandaID=6963379506
[2026-01-09 08:18:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:25:24]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | WARNING  | wrong length of table data, x=[1767975635.0, 1767975696.0], y=[13932.0, 870151.0] (must be same and length>=4)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | could have reported an average CPU frequency of 2727 MHz (4 samples)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | ..............................
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . Timing measurements:
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . get job = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . initial setup = 3 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . payload setup = 21 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . stage-in = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . payload execution = 123 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . stage-out = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . log creation = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | ..............................
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963379506/pilotlog.txt
[2026-01-09 08:25:24] 2026-01-09 16:24:40,259 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-09 08:25:24] - Log from pilotlog.txt -
[2026-01-09 08:25:24] 2026-01-09 16:24:40,243 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963379506/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | INFO     | extracted standard info from prmon json
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | WARNING  | wrong length of table data, x=[1767975635.0, 1767975696.0], y=[13932.0, 870151.0] (must be same and length>=4)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | could have reported an average CPU frequency of 2727 MHz (4 samples)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | ..............................
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . Timing measurements:
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . get job = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . initial setup = 3 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . payload setup = 21 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . stage-in = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . payload execution = 123 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . stage-out = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . log creation = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | ..............................
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963379506/pilotlog.txt
[2026-01-09 08:25:24] 2026-01-09 16:24:40,260 | WARNING  | 
[2026-01-09 08:25:24] [begin log extracts]
[2026-01-09 08:25:24] - Log from pilotlog.txt -
[2026-01-09 08:25:24] 2026-01-09 16:24:40,243 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963379506/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | INFO     | extracted standard info from prmon json
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:25:24] 2026-01-09 16:24:40,244 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | WARNING  | wrong length of table data, x=[1767975635.0, 1767975696.0], y=[13932.0, 870151.0] (must be same and length>=4)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | could have reported an average CPU frequency of 2727 MHz (4 samples)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | ..............................
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . Timing measurements:
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . get job = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . initial setup = 3 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . payload setup = 21 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,245 | INFO     | . stage-in = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . payload execution = 123 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . stage-out = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | . log creation = 0 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | ..............................
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 08:25:24] 2026-01-09 16:24:40,246 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963379506/pilotlog.txt
[2026-01-09 08:25:24] [end log extracts]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,260 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,260 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-09 08:25:24] 2026-01-09 16:24:40,315 | INFO     | 
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | job summary report
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | --------------------------------------------------
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | PanDA job id: 6963379506
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | task id: 47962010
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-09 08:22:19,411 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | pilot state: failed 
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | transexitcode: 65
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | exeerrorcode: 65
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | exitcode: 65
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | cpuconsumptiontime: 42 s
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | nevents: 0
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | neventsw: 0
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | pid: 378768
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | pgrp: 378768
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | corecount: 12
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | event service: False
[2026-01-09 08:25:24] 2026-01-09 16:24:40,316 | INFO     | sizes: {0: 2284446, 1: 2284645, 12: 2284645, 21: 2284935, 23: 2284963, 149: 2314987, 151: 2314987, 281: 2315153}
[2026-01-09 08:25:24] 2026-01-09 16:24:40,317 | INFO     | --------------------------------------------------
[2026-01-09 08:25:24] 2026-01-09 16:24:40,317 | INFO     | 
[2026-01-09 08:25:24] 2026-01-09 16:24:40,317 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-09 08:25:24] 2026-01-09 16:24:40,346 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,346 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,346 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,346 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,347 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:25:24] 2026-01-09 16:24:40,348 | INFO     | job 6963379506 has completed (purged errors)
[2026-01-09 08:25:24] 2026-01-09 16:24:40,348 | INFO     | overall cleanup function is called
[2026-01-09 08:25:24] 2026-01-09 16:24:41,355 | INFO     | --- collectZombieJob: --- 10, [378768]
[2026-01-09 08:25:24] 2026-01-09 16:24:41,356 | INFO     | zombie collector waiting for pid 378768
[2026-01-09 08:25:24] 2026-01-09 16:24:41,356 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:25:24] 2026-01-09 16:24:41,356 | INFO     | collected zombie processes
[2026-01-09 08:25:24] 2026-01-09 16:24:41,356 | INFO     | will attempt to kill all subprocesses of pid=378768
[2026-01-09 08:25:24] 2026-01-09 16:24:42,305 | INFO     | process IDs to be killed: [378768] (in reverse order)
[2026-01-09 08:25:24] 2026-01-09 16:24:42,381 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:25:24] 2026-01-09 16:24:42,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:25:24] 2026-01-09 16:24:42,390 | INFO     | did not find any defunct processes belonging to 378768
[2026-01-09 08:25:24] 2026-01-09 16:24:42,397 | INFO     | did not find any defunct processes belonging to 378768
[2026-01-09 08:25:24] 2026-01-09 16:24:42,397 | INFO     | ready for new job
[2026-01-09 08:25:24] 2026-01-09 16:24:42,397 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:25:24] 2026-01-09 16:24:42,398 | INFO     | ***************************************
[2026-01-09 08:25:24] 2026-01-09 16:24:42,398 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:25:24] 2026-01-09 16:24:42,398 | INFO     | ***************************************
[2026-01-09 08:25:24] 2026-01-09 16:24:42,398 | INFO     | 
[2026-01-09 08:25:24] 2026-01-09 16:24:42,400 | INFO     | architecture information:
[2026-01-09 08:25:24] 2026-01-09 16:24:42,401 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:25:24] 2026-01-09 16:24:42,414 | INFO     | cat /etc/os-release:
[2026-01-09 08:25:24] NAME="CentOS Linux"
[2026-01-09 08:25:24] VERSION="7 (Core)"
[2026-01-09 08:25:24] ID="centos"
[2026-01-09 08:25:24] ID_LIKE="rhel fedora"
[2026-01-09 08:25:24] VERSION_ID="7"
[2026-01-09 08:25:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:25:24] ANSI_COLOR="0;31"
[2026-01-09 08:25:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:25:24] HOME_URL="https://www.centos.org/"
[2026-01-09 08:25:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:25:24] 
[2026-01-09 08:25:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:25:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:25:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:25:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:25:24] 
[2026-01-09 08:25:24] 2026-01-09 16:24:42,414 | INFO     | ***************************************
[2026-01-09 08:25:24] 2026-01-09 16:24:42,918 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-09 08:25:24] 2026-01-09 16:24:42,934 | INFO     | sufficient remaining disk space (1820289138688 B)
[2026-01-09 08:25:24] 2026-01-09 16:24:42,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:25:24] 2026-01-09 16:24:42,934 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:25:24] 2026-01-09 16:24:42,934 | INFO     | update_server=False
[2026-01-09 08:25:24] 2026-01-09 16:24:42,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:25:24] 2026-01-09 16:24:42,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:25:24] 2026-01-09 16:24:43,152 | INFO     | all payload control threads have been joined
[2026-01-09 08:25:24] 2026-01-09 16:24:43,374 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 08:25:24] 2026-01-09 16:24:43,375 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 08:25:24] 2026-01-09 16:24:43,375 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:25:24] 2026-01-09 16:24:43,375 | INFO     | will abort loop
[2026-01-09 08:25:24] 2026-01-09 16:24:43,462 | INFO     | all job control threads have been joined
[2026-01-09 08:25:24] 2026-01-09 16:24:43,847 | INFO     | all data control threads have been joined
[2026-01-09 08:25:24] 2026-01-09 16:24:43,949 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,141 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,163 | INFO     | [payload] control thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,245 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,380 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,399 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:25:24] 2026-01-09 16:24:44,468 | INFO     | [job] control thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,473 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,853 | INFO     | [data] control thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:44,999 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:45,075 | INFO     | [job] validate thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:45,202 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:45,224 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:45,319 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:45,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:25:24] 2026-01-09 16:24:46,358 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:46,406 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:24:46,943 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:25:24] 2026-01-09 16:25:12,762 | INFO     | PID=371867 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 08:25:24] 2026-01-09 16:25:12,762 | INFO     | .. there are 35 such processes running
[2026-01-09 08:25:24] 2026-01-09 16:25:12,762 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:25:24] 2026-01-09 16:25:12,762 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:25:24] 2026-01-09 16:25:12,762 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:25:24] 2026-01-09 16:25:17,572 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:25:24] 2026-01-09 16:25:18,620 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976876181312)>', '<ExcThread(monitor, started 139976171828992)>']
[2026-01-09 08:25:24] 2026-01-09 16:25:18,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:25:24] 2026-01-09 16:25:18,805 | INFO     | [monitor] control thread has ended
[2026-01-09 08:25:24] 2026-01-09 16:25:23,646 | INFO     | all workflow threads have been joined
[2026-01-09 08:25:24] 2026-01-09 16:25:23,647 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:25:24] 2026-01-09 16:25:23,647 | INFO     | traces error code: 0
[2026-01-09 08:25:24] 2026-01-09 16:25:23,647 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:25:24] 2026-01-09 16:25:23,916 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:25:24] 2026-01-09 16:25:23,944 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:25:24] 2026-01-09 16:25:23,955 [wrapper] pilotpid: 371867
[2026-01-09 08:25:24] 2026-01-09 16:25:23,984 [wrapper] Pilot exit status: 0
[2026-01-09 08:25:24] 2026-01-09 16:25:24,128 [wrapper] pandaids: 6963379506
[2026-01-09 08:25:24] 2026-01-09 16:25:24,277 [wrapper] cleanup supervisor_pilot  371873 371868
[2026-01-09 08:25:24] 2026-01-09 16:25:24,279 [wrapper] Test setup, not cleaning
[2026-01-09 08:25:24] 2026-01-09 16:25:24,281 [wrapper] apfmon messages muted
[2026-01-09 08:25:24] 2026-01-09 16:25:24,282 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:25:24] 2026-01-09 16:25:24,290 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:25:24]  *** Error codes and diagnostics ***
[2026-01-09 08:25:24]     "exeErrorCode": 65,
[2026-01-09 08:25:24]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2026-01-09 08:25:24]     "pilotErrorCode": 1305,
[2026-01-09 08:25:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2026-01-09 08:25:24]  *** Listing of results directory ***
[2026-01-09 08:25:24] total 387272
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc    579449 Jan  8 23:13 pilot3.tar.gz
[2026-01-09 08:25:24] -rwx------. 1 boinc boinc     36322 Jan  8 23:15 runpilot2-wrapper.sh
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc      5112 Jan  8 23:16 queuedata.json
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc       100 Jan  9 08:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:25:24] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 08:18 run_atlas
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc       105 Jan  9 08:18 job.xml
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc      6595 Jan  9 08:18 init_data.xml
[2026-01-09 08:25:24] -rw-r--r--. 2 boinc boinc 392348212 Jan  9 08:18 EVNT.47962006._000012.pool.root.1
[2026-01-09 08:25:24] -rw-r--r--. 2 boinc boinc     15847 Jan  9 08:18 start_atlas.sh
[2026-01-09 08:25:24] drwxrwx--x. 2 boinc boinc      4096 Jan  9 08:18 shared
[2026-01-09 08:25:24] -rw-r--r--. 2 boinc boinc    592607 Jan  9 08:18 input.tar.gz
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc         0 Jan  9 08:18 boinc_lockfile
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc      2891 Jan  9 08:18 pandaJob.out
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc    989356 Jan  9 08:19 agis_schedconf.cvmfs.json
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc   1516240 Jan  9 08:19 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:25:24] drwx------. 5 boinc boinc      4096 Jan  9 08:19 pilot3
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc       524 Jan  9 08:21 boinc_task_state.xml
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc      1006 Jan  9 08:22 memory_monitor_summary.json
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc     48993 Jan  9 08:22 log.47962010._001367.job.log.tgz.1
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc        95 Jan  9 08:24 pilot_heartbeat.json
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc     10333 Jan  9 08:24 heartbeat.json
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc      8192 Jan  9 08:25 boinc_mmap_file
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc        23 Jan  9 08:25 wrapper_checkpoint.txt
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc      5008 Jan  9 08:25 pilotlog.txt
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc    104769 Jan  9 08:25 log.47962010._001367.job.log.1
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc       186 Jan  9 08:25 output.list
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc       620 Jan  9 08:25 runtime_log
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc    174080 Jan  9 08:25 result.tar.gz
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc      8636 Jan  9 08:25 runtime_log.err
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc       646 Jan  9 08:25 7QrKDmHtLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlKhKDmLy0i3m.diag
[2026-01-09 08:25:24] -rw-r--r--. 1 boinc boinc     22384 Jan  9 08:25 stderr.txt
[2026-01-09 08:25:24] No HITS result produced
[2026-01-09 08:25:24]  *** Contents of shared directory: ***
[2026-01-09 08:25:24] total 383924
[2026-01-09 08:25:24] -rw-r--r--. 2 boinc boinc 392348212 Jan  9 08:18 ATLAS.root_0
[2026-01-09 08:25:24] -rw-r--r--. 2 boinc boinc     15847 Jan  9 08:18 start_atlas.sh
[2026-01-09 08:25:24] -rw-r--r--. 2 boinc boinc    592607 Jan  9 08:18 input.tar.gz
[2026-01-09 08:25:24] -rw-------. 1 boinc boinc    174080 Jan  9 08:25 result.tar.gz
08:25:26 (368108): run_atlas exited; CPU time 47.445861
08:25:26 (368108): called boinc_finish(0)

</stderr_txt>
]]>

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