Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:13:06 (15028): wrapper (7.7.26015): starting
19:13:06 (15028): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 19:13:06] Arguments: --nthreads 8
[2026-01-09 19:13:06] Threads: 8
[2026-01-09 19:13:06] Checking for CVMFS
[2026-01-09 19:13:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:13:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:13:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:13:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:13:06] 2.11.2.0 898 35742 95812 154952 3 9 18677768 25165825 0 130560 0 14785103 99.817 12654483 3802 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 19:13:06] CVMFS is ok
[2026-01-09 19:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:13:06] Checking for apptainer binary...
[2026-01-09 19:13:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:13:06] Running /usr/bin/apptainer --version
[2026-01-09 19:13:06] apptainer version 1.3.2-1.el7
[2026-01-09 19:13:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:13:08] cg-vwn390.simple-grid.lan
[2026-01-09 19:13:08] apptainer works
[2026-01-09 19:13:08] Set ATHENA_PROC_NUMBER=8
[2026-01-09 19:13:08] Set ATHENA_CORE_NUMBER=8
[2026-01-09 19:13:08] Starting ATLAS job with PandaID=6963383758
[2026-01-09 19:13:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:10:41]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:10:41] 2026-01-09 20:09:56,060 | INFO     | maximum number of monitored processes: 6
[2026-01-09 21:10:41] 2026-01-09 20:09:57,032 | INFO     | time since job start (6994s) is within the limit (349056.0s)
[2026-01-09 21:10:41] 2026-01-09 20:09:58,562 | INFO     | monitor loop #480: job 0:6963383758 is in state 'finished'
[2026-01-09 21:10:41] 2026-01-09 20:09:58,563 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:10:41] 2026-01-09 20:09:59,038 | INFO     | time since job start (6996s) is within the limit (349056.0s)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,043 | INFO     | time since job start (6998s) is within the limit (349056.0s)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,066 | INFO     | monitor loop #481: job 0:6963383758 is in state 'finished'
[2026-01-09 21:10:41] 2026-01-09 20:10:01,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,858 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 21:10:41] 2026-01-09 20:10:01,859 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 21:10:41] 2026-01-09 20:10:01,861 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6963383758/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,861 | INFO     | extracted standard info from prmon json
[2026-01-09 21:10:41] 2026-01-09 20:10:01,862 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:10:41] 2026-01-09 20:10:01,862 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:10:41] 2026-01-09 20:10:01,862 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 21:10:41] 2026-01-09 20:10:01,862 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 21:10:41] 2026-01-09 20:10:01,865 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:10:41] 2026-01-09 20:10:01,865 | INFO     | sum of square deviations: 459366752.5
[2026-01-09 21:10:41] 2026-01-09 20:10:01,866 | INFO     | sum of deviations: 6277491547.500002
[2026-01-09 21:10:41] 2026-01-09 20:10:01,866 | INFO     | mean x: 1767985882.5
[2026-01-09 21:10:41] 2026-01-09 20:10:01,866 | INFO     | mean y: 2521197.8157894737
[2026-01-09 21:10:41] 2026-01-09 20:10:01,867 | INFO     | intersect: -24157948346.599228
[2026-01-09 21:10:41] 2026-01-09 20:10:01,867 | INFO     | chi2: 1.6377757495417637
[2026-01-09 21:10:41] 2026-01-09 20:10:01,867 | INFO     | sum of square deviations: 401533110.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,868 | INFO     | sum of deviations: 6092581484.999997
[2026-01-09 21:10:41] 2026-01-09 20:10:01,868 | INFO     | mean x: 1767985730.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,868 | INFO     | mean y: 2520709.9174311925
[2026-01-09 21:10:41] 2026-01-09 20:10:01,868 | INFO     | intersect: -26823653411.42017
[2026-01-09 21:10:41] 2026-01-09 20:10:01,869 | INFO     | chi2: 1.6405893627065888
[2026-01-09 21:10:41] 2026-01-09 20:10:01,869 | INFO     | current chi2=1.6405893627065888 (change=-0.17179477505466278 %)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,869 | INFO     | right removable region: 108
[2026-01-09 21:10:41] 2026-01-09 20:10:01,869 | INFO     | sum of square deviations: 401533110.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,870 | INFO     | sum of deviations: -11303386315.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,870 | INFO     | mean x: 1767986035.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,870 | INFO     | mean y: 2566638.348623853
[2026-01-09 21:10:41] 2026-01-09 20:10:01,870 | INFO     | intersect: 49772383013.21771
[2026-01-09 21:10:41] 2026-01-09 20:10:01,871 | INFO     | chi2: 0.11407329142027998
[2026-01-09 21:10:41] 2026-01-09 20:10:01,871 | INFO     | current chi2=0.11407329142027998 (change=93.03486503251762 %)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,871 | INFO     | sum of square deviations: 348769330.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,872 | INFO     | sum of deviations: -10806211488.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,872 | INFO     | mean x: 1767986187.5
[2026-01-09 21:10:41] 2026-01-09 20:10:01,872 | INFO     | mean y: 2565033.7884615385
[2026-01-09 21:10:41] 2026-01-09 20:10:01,872 | INFO     | intersect: 54781557928.5703
[2026-01-09 21:10:41] 2026-01-09 20:10:01,872 | INFO     | chi2: 0.09533793968118143
[2026-01-09 21:10:41] 2026-01-09 20:10:01,872 | INFO     | current chi2=0.09533793968118143 (change=16.42395998733125 %)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,873 | INFO     | left removable region: 20
[2026-01-09 21:10:41] 2026-01-09 20:10:01,873 | INFO     | sum of square deviations: 211285822.0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,873 | INFO     | sum of deviations: -3898030662.0000005
[2026-01-09 21:10:41] 2026-01-09 20:10:01,873 | INFO     | mean x: 1767986309.5
[2026-01-09 21:10:41] 2026-01-09 20:10:01,874 | INFO     | mean y: 2543126.340909091
[2026-01-09 21:10:41] 2026-01-09 20:10:01,874 | INFO     | intersect: 32620277620.741688
[2026-01-09 21:10:41] 2026-01-09 20:10:01,874 | INFO     | chi2: 0.06190808299074018
[2026-01-09 21:10:41] 2026-01-09 20:10:01,874 | INFO     | current memory leak: -18.45 B/s (using 88 data points, chi2=0.06)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | could have reported an average CPU frequency of 1999 MHz (7 samples)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | ..............................
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | . Timing measurements:
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | . get job = 0 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | . initial setup = 2 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | . payload setup = 7 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | . stage-in = 0 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,875 | INFO     | . payload execution = 6958 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,876 | INFO     | . stage-out = 0 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,876 | INFO     | . log creation = 0 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,876 | INFO     | ..............................
[2026-01-09 21:10:41] 2026-01-09 20:10:01,990 | INFO     | 
[2026-01-09 21:10:41] 2026-01-09 20:10:01,991 | INFO     | job summary report
[2026-01-09 21:10:41] 2026-01-09 20:10:01,991 | INFO     | --------------------------------------------------
[2026-01-09 21:10:41] 2026-01-09 20:10:01,991 | INFO     | PanDA job id: 6963383758
[2026-01-09 21:10:41] 2026-01-09 20:10:01,991 | INFO     | task id: 47929288
[2026-01-09 21:10:41] 2026-01-09 20:10:01,991 | INFO     | errors: (none)
[2026-01-09 21:10:41] 2026-01-09 20:10:01,991 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:10:41] 2026-01-09 20:10:01,991 | INFO     | pilot state: finished 
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | transexitcode: 0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | exeerrorcode: 0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | exeerrordiag: 
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | exitcode: 0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | exitmsg: OK
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | cpuconsumptiontime: 50728 s
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | nevents: 400
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | neventsw: 0
[2026-01-09 21:10:41] 2026-01-09 20:10:01,992 | INFO     | pid: 25198
[2026-01-09 21:10:41] 2026-01-09 20:10:01,993 | INFO     | pgrp: 25198
[2026-01-09 21:10:41] 2026-01-09 20:10:01,993 | INFO     | corecount: 8
[2026-01-09 21:10:41] 2026-01-09 20:10:01,993 | INFO     | event service: False
[2026-01-09 21:10:41] 2026-01-09 20:10:01,993 | INFO     | sizes: {0: 2283792, 1: 2283991, 6: 2284253, 11: 2284281, 6969: 2311313, 6970: 2311312, 6972: 2320550, 6981: 2320688}
[2026-01-09 21:10:41] 2026-01-09 20:10:01,993 | INFO     | --------------------------------------------------
[2026-01-09 21:10:41] 2026-01-09 20:10:01,993 | INFO     | 
[2026-01-09 21:10:41] 2026-01-09 20:10:01,993 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-09 21:10:41] 2026-01-09 20:10:02,027 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,027 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,029 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:10:41] 2026-01-09 20:10:02,030 | INFO     | job 6963383758 has completed (purged errors)
[2026-01-09 21:10:41] 2026-01-09 20:10:02,030 | INFO     | overall cleanup function is called
[2026-01-09 21:10:41] 2026-01-09 20:10:03,038 | INFO     | --- collectZombieJob: --- 10, [25198]
[2026-01-09 21:10:41] 2026-01-09 20:10:03,038 | INFO     | zombie collector waiting for pid 25198
[2026-01-09 21:10:41] 2026-01-09 20:10:03,038 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:10:41] 2026-01-09 20:10:03,038 | INFO     | collected zombie processes
[2026-01-09 21:10:41] 2026-01-09 20:10:03,039 | INFO     | will attempt to kill all subprocesses of pid=25198
[2026-01-09 21:10:41] 2026-01-09 20:10:03,104 | INFO     | process IDs to be killed: [25198] (in reverse order)
[2026-01-09 21:10:41] 2026-01-09 20:10:03,153 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:10:41] 2026-01-09 20:10:03,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:10:41] 2026-01-09 20:10:03,156 | INFO     | did not find any defunct processes belonging to 25198
[2026-01-09 21:10:41] 2026-01-09 20:10:03,157 | INFO     | did not find any defunct processes belonging to 25198
[2026-01-09 21:10:41] 2026-01-09 20:10:03,157 | INFO     | ready for new job
[2026-01-09 21:10:41] 2026-01-09 20:10:03,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:10:41] 2026-01-09 20:10:03,159 | INFO     | ***************************************
[2026-01-09 21:10:41] 2026-01-09 20:10:03,159 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:10:41] 2026-01-09 20:10:03,159 | INFO     | ***************************************
[2026-01-09 21:10:41] 2026-01-09 20:10:03,160 | INFO     | 
[2026-01-09 21:10:41] 2026-01-09 20:10:03,160 | INFO     | pilot is running in a VM
[2026-01-09 21:10:41] 2026-01-09 20:10:03,160 | INFO     | architecture information:
[2026-01-09 21:10:41] 2026-01-09 20:10:03,162 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:10:41] 2026-01-09 20:10:03,185 | INFO     | cat /etc/os-release:
[2026-01-09 21:10:41] NAME="CentOS Linux"
[2026-01-09 21:10:41] VERSION="7 (Core)"
[2026-01-09 21:10:41] ID="centos"
[2026-01-09 21:10:41] ID_LIKE="rhel fedora"
[2026-01-09 21:10:41] VERSION_ID="7"
[2026-01-09 21:10:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:10:41] ANSI_COLOR="0;31"
[2026-01-09 21:10:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:10:41] HOME_URL="https://www.centos.org/"
[2026-01-09 21:10:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:10:41] 
[2026-01-09 21:10:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:10:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:10:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:10:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:10:41] 
[2026-01-09 21:10:41] 2026-01-09 20:10:03,186 | INFO     | ***************************************
[2026-01-09 21:10:41] 2026-01-09 20:10:03,689 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-09 21:10:41] 2026-01-09 20:10:03,710 | INFO     | sufficient remaining disk space (498117640192 B)
[2026-01-09 21:10:41] 2026-01-09 20:10:03,710 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:10:41] 2026-01-09 20:10:03,710 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:10:41] 2026-01-09 20:10:03,710 | INFO     | update_server=False
[2026-01-09 21:10:41] 2026-01-09 20:10:03,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:10:41] 2026-01-09 20:10:03,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:10:41] 2026-01-09 20:10:03,711 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:10:41] 2026-01-09 20:10:03,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:10:41] 2026-01-09 20:10:04,128 | INFO     | all payload control threads have been joined
[2026-01-09 21:10:41] 2026-01-09 20:10:04,152 | INFO     | all data control threads have been joined
[2026-01-09 21:10:41] 2026-01-09 20:10:04,262 | INFO     | all job control threads have been joined
[2026-01-09 21:10:41] 2026-01-09 20:10:04,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:10:41] 2026-01-09 20:10:04,575 | INFO     | aborting loop
[2026-01-09 21:10:41] 2026-01-09 20:10:04,712 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:04,717 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:04,950 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,000 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,134 | INFO     | [payload] control thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,158 | INFO     | [data] control thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,267 | INFO     | [job] control thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,400 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,581 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,675 | INFO     | [job] validate thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,714 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,731 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:05,977 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:06,110 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:07,720 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:14,287 | INFO     | job.realtimelogging is not enabled
[2026-01-09 21:10:41] 2026-01-09 20:10:15,293 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:10:41] 2026-01-09 20:10:34,141 | INFO     | PID=18756 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 21:10:41] 2026-01-09 20:10:34,141 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:10:41] 2026-01-09 20:10:34,141 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:10:41] 2026-01-09 20:10:34,142 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:10:41] 2026-01-09 20:10:34,436 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:10:41] 2026-01-09 20:10:36,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394664810304)>', '<ExcThread(monitor, started 140394437822208)>']
[2026-01-09 21:10:41] 2026-01-09 20:10:37,154 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:10:41] 2026-01-09 20:10:37,154 | INFO     | [monitor] control thread has ended
[2026-01-09 21:10:41] 2026-01-09 20:10:41,243 | INFO     | all workflow threads have been joined
[2026-01-09 21:10:41] 2026-01-09 20:10:41,243 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:10:41] 2026-01-09 20:10:41,243 | INFO     | traces error code: 0
[2026-01-09 21:10:41] 2026-01-09 20:10:41,244 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:10:41] 2026-01-09 20:10:41,384 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:10:41] 2026-01-09 20:10:41,388 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:10:41] 2026-01-09 20:10:41,391 [wrapper] pilotpid: 18756
[2026-01-09 21:10:41] 2026-01-09 20:10:41,395 [wrapper] Pilot exit status: 0
[2026-01-09 21:10:41] 2026-01-09 20:10:41,414 [wrapper] pandaids: 6963383758
[2026-01-09 21:10:41] 2026-01-09 20:10:41,446 [wrapper] cleanup supervisor_pilot  6755 18757
[2026-01-09 21:10:41] 2026-01-09 20:10:41,452 [wrapper] Test setup, not cleaning
[2026-01-09 21:10:41] 2026-01-09 20:10:41,455 [wrapper] apfmon messages muted
[2026-01-09 21:10:41] 2026-01-09 20:10:41,459 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:10:41] 2026-01-09 20:10:41,463 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:10:41]  *** Error codes and diagnostics ***
[2026-01-09 21:10:41]     "exeErrorCode": 0,
[2026-01-09 21:10:41]     "exeErrorDiag": "",
[2026-01-09 21:10:41]     "pilotErrorCode": 0,
[2026-01-09 21:10:41]     "pilotErrorDiag": "",
[2026-01-09 21:10:41]  *** Listing of results directory ***
[2026-01-09 21:10:41] total 436196
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-09 21:10:41] -rwx------. 1 boinc boinc     36322 Jan  9 08:14 runpilot2-wrapper.sh
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:16 queuedata.json
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc       100 Jan  9 19:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:10:41] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 19:13 run_atlas
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc       105 Jan  9 19:13 job.xml
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc      6390 Jan  9 19:13 init_data.xml
[2026-01-09 21:10:41] -rw-r--r--. 2 boinc boinc 254604138 Jan  9 19:13 EVNT.47929286._000041.pool.root.1
[2026-01-09 21:10:41] -rw-r--r--. 2 boinc boinc     15847 Jan  9 19:13 start_atlas.sh
[2026-01-09 21:10:41] drwxrwx--x. 2 boinc boinc        68 Jan  9 19:13 shared
[2026-01-09 21:10:41] -rw-r--r--. 2 boinc boinc    592406 Jan  9 19:13 input.tar.gz
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc         0 Jan  9 19:13 boinc_lockfile
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc      2548 Jan  9 19:13 pandaJob.out
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc    989372 Jan  9 19:13 agis_schedconf.cvmfs.json
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc   1516240 Jan  9 19:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:10:41] drwx------. 5 boinc boinc      4096 Jan  9 19:13 pilot3
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc       530 Jan  9 21:09 boinc_task_state.xml
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc 185559042 Jan  9 21:09 HITS.47929288._002303.pool.root.1
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc        95 Jan  9 21:09 pilot_heartbeat.json
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc      1027 Jan  9 21:09 memory_monitor_summary.json
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc    344675 Jan  9 21:09 log.47929288._002303.job.log.tgz.1
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc      7766 Jan  9 21:10 heartbeat.json
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc      8192 Jan  9 21:10 boinc_mmap_file
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc        27 Jan  9 21:10 wrapper_checkpoint.txt
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc      4881 Jan  9 21:10 pilotlog.txt
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc    952458 Jan  9 21:10 log.47929288._002303.job.log.1
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc       357 Jan  9 21:10 output.list
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc       620 Jan  9 21:10 runtime_log
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc   1320960 Jan  9 21:10 result.tar.gz
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc       653 Jan  9 21:10 wlOODmTsLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHUmKDmbRaaym.diag
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc      8816 Jan  9 21:10 runtime_log.err
[2026-01-09 21:10:41] -rw-r--r--. 1 boinc boinc     20917 Jan  9 21:10 stderr.txt
[2026-01-09 21:10:41] HITS file was successfully produced:
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc 185559042 Jan  9 21:09 shared/HITS.pool.root.1
[2026-01-09 21:10:41]  *** Contents of shared directory: ***
[2026-01-09 21:10:41] total 431740
[2026-01-09 21:10:41] -rw-r--r--. 2 boinc boinc 254604138 Jan  9 19:13 ATLAS.root_0
[2026-01-09 21:10:41] -rw-r--r--. 2 boinc boinc     15847 Jan  9 19:13 start_atlas.sh
[2026-01-09 21:10:41] -rw-r--r--. 2 boinc boinc    592406 Jan  9 19:13 input.tar.gz
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc 185559042 Jan  9 21:09 HITS.pool.root.1
[2026-01-09 21:10:41] -rw-------. 1 boinc boinc   1320960 Jan  9 21:10 result.tar.gz
21:10:43 (15028): run_atlas exited; CPU time 50770.515773
21:10:43 (15028): called boinc_finish(0)

</stderr_txt>
]]>

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