Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:15:34 (31078): wrapper (7.7.26015): starting
10:15:34 (31078): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 10:15:34] Arguments: --nthreads 12
[2026-01-09 10:15:34] Threads: 12
[2026-01-09 10:15:34] Checking for CVMFS
[2026-01-09 10:15:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:15:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:15:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:15:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:15:34] 2.11.2.0 2947 351163 95984 154948 2 10 12248887 20275201 1 130560 1 149411256 99.954 20591459 14780 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 10:15:34] CVMFS is ok
[2026-01-09 10:15:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 10:15:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 10:15:34] Further information can be found at the LHC@home message board.
[2026-01-09 10:15:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:15:34] Checking for apptainer binary...
[2026-01-09 10:15:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:15:34] Running /usr/bin/apptainer --version
[2026-01-09 10:15:34] apptainer version 1.3.2-1.el7
[2026-01-09 10:15:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:15:36] c-205-18.aglt2.org
[2026-01-09 10:15:36] apptainer works
[2026-01-09 10:15:36] Set ATHENA_PROC_NUMBER=12
[2026-01-09 10:15:36] Set ATHENA_CORE_NUMBER=12
[2026-01-09 10:15:36] Starting ATLAS job with PandaID=6963168936
[2026-01-09 10:15:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:49:04 (8659): wrapper (7.7.26015): starting
11:49:04 (8659): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 11:49:04] Arguments: --nthreads 12
[2026-01-09 11:49:04] Threads: 12
[2026-01-09 11:49:04] This job has been restarted, cleaning up previous attempt
[2026-01-09 11:49:04] Checking for CVMFS
[2026-01-09 11:49:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:49:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:49:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:49:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:49:05] 2.11.2.0 2947 351256 96912 154950 1 11 12354718 20275201 1 130560 1 149483562 99.954 20593910 14781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 11:49:05] CVMFS is ok
[2026-01-09 11:49:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:49:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:49:05] Further information can be found at the LHC@home message board.
[2026-01-09 11:49:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:49:05] Checking for apptainer binary...
[2026-01-09 11:49:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:49:05] Running /usr/bin/apptainer --version
[2026-01-09 11:49:05] apptainer version 1.3.2-1.el7
[2026-01-09 11:49:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:49:06] c-205-18.aglt2.org
[2026-01-09 11:49:06] apptainer works
[2026-01-09 11:49:06] Set ATHENA_PROC_NUMBER=12
[2026-01-09 11:49:06] Set ATHENA_CORE_NUMBER=12
[2026-01-09 11:49:06] Starting ATLAS job with PandaID=6963168936
[2026-01-09 11:49:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:31:37]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:31:37] 2026-01-09 18:30:49,293 | INFO     | time since job start (6088s) is within the limit (349056.0s)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,039 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 13:31:37] 2026-01-09 18:30:50,043 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1851.0833333333333
[2026-01-09 13:31:37] 2026-01-09 18:30:50,046 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963168936/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,047 | INFO     | extracted standard info from prmon json
[2026-01-09 13:31:37] 2026-01-09 18:30:50,047 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:31:37] 2026-01-09 18:30:50,047 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:31:37] 2026-01-09 18:30:50,048 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:31:37] 2026-01-09 18:30:50,048 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:31:37] 2026-01-09 18:30:50,051 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:31:37] 2026-01-09 18:30:50,051 | INFO     | sum of square deviations: 310052325.0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,051 | INFO     | sum of deviations: -2492752067.999995
[2026-01-09 13:31:37] 2026-01-09 18:30:50,051 | INFO     | mean x: 1767980409.5
[2026-01-09 13:31:37] 2026-01-09 18:30:50,052 | INFO     | mean y: 2656701.28
[2026-01-09 13:31:37] 2026-01-09 18:30:50,052 | INFO     | intersect: 14216827880.175703
[2026-01-09 13:31:37] 2026-01-09 18:30:50,052 | INFO     | chi2: 2.313391628930275
[2026-01-09 13:31:37] 2026-01-09 18:30:50,052 | INFO     | sum of square deviations: 265828240.0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,053 | INFO     | sum of deviations: 4688785130.000003
[2026-01-09 13:31:37] 2026-01-09 18:30:50,053 | INFO     | mean x: 1767980257.0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,053 | INFO     | mean y: 2680480.8105263156
[2026-01-09 13:31:37] 2026-01-09 18:30:50,053 | INFO     | intersect: -31181664490.044273
[2026-01-09 13:31:37] 2026-01-09 18:30:50,053 | INFO     | chi2: 1.5433383975606938
[2026-01-09 13:31:37] 2026-01-09 18:30:50,053 | INFO     | current chi2=1.5433383975606938 (change=33.286764840834934 %)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,053 | INFO     | sum of square deviations: 226022842.5
[2026-01-09 13:31:37] 2026-01-09 18:30:50,054 | INFO     | sum of deviations: 4662243236.999999
[2026-01-09 13:31:37] 2026-01-09 18:30:50,054 | INFO     | mean x: 1767980104.5
[2026-01-09 13:31:37] 2026-01-09 18:30:50,054 | INFO     | mean y: 2680379.2
[2026-01-09 13:31:37] 2026-01-09 18:30:50,054 | INFO     | intersect: -36465993291.93869
[2026-01-09 13:31:37] 2026-01-09 18:30:50,054 | INFO     | chi2: 1.5470031710215204
[2026-01-09 13:31:37] 2026-01-09 18:30:50,055 | INFO     | current chi2=1.5470031710215204 (change=-0.23745754441274355 %)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,055 | INFO     | right removable region: 89
[2026-01-09 13:31:37] 2026-01-09 18:30:50,055 | INFO     | sum of square deviations: 265828240.0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,055 | INFO     | sum of deviations: -18007797433.999996
[2026-01-09 13:31:37] 2026-01-09 18:30:50,055 | INFO     | mean x: 1767980562.0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,056 | INFO     | mean y: 2709037.4631578946
[2026-01-09 13:31:37] 2026-01-09 18:30:50,056 | INFO     | intersect: 119769652638.88593
[2026-01-09 13:31:37] 2026-01-09 18:30:50,056 | INFO     | chi2: 0.9157059588891905
[2026-01-09 13:31:37] 2026-01-09 18:30:50,056 | INFO     | current chi2=0.9157059588891905 (change=60.41716640460838 %)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,056 | INFO     | sum of square deviations: 226022842.5
[2026-01-09 13:31:37] 2026-01-09 18:30:50,057 | INFO     | sum of deviations: -16915154941.999998
[2026-01-09 13:31:37] 2026-01-09 18:30:50,057 | INFO     | mean x: 1767980714.5
[2026-01-09 13:31:37] 2026-01-09 18:30:50,057 | INFO     | mean y: 2704596.5555555555
[2026-01-09 13:31:37] 2026-01-09 18:30:50,057 | INFO     | intersect: 132315294728.83548
[2026-01-09 13:31:37] 2026-01-09 18:30:50,057 | INFO     | chi2: 0.8931817687795451
[2026-01-09 13:31:37] 2026-01-09 18:30:50,057 | INFO     | current chi2=0.8931817687795451 (change=2.459762316821507 %)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,057 | INFO     | left removable region: 20
[2026-01-09 13:31:37] 2026-01-09 18:30:50,058 | INFO     | sum of square deviations: 101843770.0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,058 | INFO     | sum of deviations: -3979271559.999999
[2026-01-09 13:31:37] 2026-01-09 18:30:50,058 | INFO     | mean x: 1767980684.0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,058 | INFO     | mean y: 2708086.5942028984
[2026-01-09 13:31:37] 2026-01-09 18:30:50,058 | INFO     | intersect: 69081801039.168
[2026-01-09 13:31:37] 2026-01-09 18:30:50,058 | INFO     | chi2: 0.052730474972674225
[2026-01-09 13:31:37] 2026-01-09 18:30:50,059 | INFO     | current memory leak: -39.07 B/s (using 69 data points, chi2=0.05)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,059 | INFO     | could have reported an average CPU frequency of 2145 MHz (7 samples)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,059 | INFO     | ..............................
[2026-01-09 13:31:37] 2026-01-09 18:30:50,059 | INFO     | . Timing measurements:
[2026-01-09 13:31:37] 2026-01-09 18:30:50,059 | INFO     | . get job = 0 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,059 | INFO     | . initial setup = 1 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,059 | INFO     | . payload setup = 7 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,060 | INFO     | . stage-in = 0 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,060 | INFO     | . payload execution = 6051 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,060 | INFO     | . stage-out = 2 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,060 | INFO     | . log creation = 0 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,060 | INFO     | ..............................
[2026-01-09 13:31:37] 2026-01-09 18:30:50,412 | INFO     | 
[2026-01-09 13:31:37] 2026-01-09 18:30:50,413 | INFO     | job summary report
[2026-01-09 13:31:37] 2026-01-09 18:30:50,413 | INFO     | --------------------------------------------------
[2026-01-09 13:31:37] 2026-01-09 18:30:50,413 | INFO     | PanDA job id: 6963168936
[2026-01-09 13:31:37] 2026-01-09 18:30:50,414 | INFO     | task id: 47898826
[2026-01-09 13:31:37] 2026-01-09 18:30:50,414 | INFO     | errors: (none)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,414 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:31:37] 2026-01-09 18:30:50,414 | INFO     | pilot state: finished 
[2026-01-09 13:31:37] 2026-01-09 18:30:50,414 | INFO     | transexitcode: 0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,415 | INFO     | exeerrorcode: 0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,415 | INFO     | exeerrordiag: 
[2026-01-09 13:31:37] 2026-01-09 18:30:50,415 | INFO     | exitcode: 0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,415 | INFO     | exitmsg: OK
[2026-01-09 13:31:37] 2026-01-09 18:30:50,416 | INFO     | cpuconsumptiontime: 66975 s
[2026-01-09 13:31:37] 2026-01-09 18:30:50,416 | INFO     | nevents: 400
[2026-01-09 13:31:37] 2026-01-09 18:30:50,416 | INFO     | neventsw: 0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,416 | INFO     | pid: 19094
[2026-01-09 13:31:37] 2026-01-09 18:30:50,416 | INFO     | pgrp: 19094
[2026-01-09 13:31:37] 2026-01-09 18:30:50,416 | INFO     | corecount: 12
[2026-01-09 13:31:37] 2026-01-09 18:30:50,416 | INFO     | PID=12710 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:31:37] 2026-01-09 18:30:50,417 | INFO     | event service: False
[2026-01-09 13:31:37] 2026-01-09 18:30:50,417 | INFO     | sizes: {0: 2283970, 5: 2284232, 11: 2284288, 6062: 2311040, 6066: 2320094, 6072: 2320232}
[2026-01-09 13:31:37] 2026-01-09 18:30:50,417 | INFO     | --------------------------------------------------
[2026-01-09 13:31:37] 2026-01-09 18:30:50,417 | INFO     | 
[2026-01-09 13:31:37] 2026-01-09 18:30:50,417 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 13:31:37] 2026-01-09 18:30:50,440 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,440 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,440 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,440 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,440 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,441 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,441 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,441 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,441 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,443 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,443 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,443 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:31:37] 2026-01-09 18:30:50,443 | INFO     | job 6963168936 has completed (purged errors)
[2026-01-09 13:31:37] 2026-01-09 18:30:50,444 | INFO     | overall cleanup function is called
[2026-01-09 13:31:37] 2026-01-09 18:30:51,452 | INFO     | --- collectZombieJob: --- 10, [19094]
[2026-01-09 13:31:37] 2026-01-09 18:30:51,452 | INFO     | zombie collector waiting for pid 19094
[2026-01-09 13:31:37] 2026-01-09 18:30:51,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:31:37] 2026-01-09 18:30:51,453 | INFO     | collected zombie processes
[2026-01-09 13:31:37] 2026-01-09 18:30:51,453 | INFO     | will attempt to kill all subprocesses of pid=19094
[2026-01-09 13:31:37] 2026-01-09 18:30:51,547 | INFO     | process IDs to be killed: [19094] (in reverse order)
[2026-01-09 13:31:37] 2026-01-09 18:30:51,598 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:31:37] 2026-01-09 18:30:51,598 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:31:37] 2026-01-09 18:30:51,601 | INFO     | did not find any defunct processes belonging to 19094
[2026-01-09 13:31:37] 2026-01-09 18:30:51,604 | INFO     | did not find any defunct processes belonging to 19094
[2026-01-09 13:31:37] 2026-01-09 18:30:51,604 | INFO     | ready for new job
[2026-01-09 13:31:37] 2026-01-09 18:30:51,605 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:31:37] 2026-01-09 18:30:51,606 | INFO     | ***************************************
[2026-01-09 13:31:37] 2026-01-09 18:30:51,607 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:31:37] 2026-01-09 18:30:51,607 | INFO     | ***************************************
[2026-01-09 13:31:37] 2026-01-09 18:30:51,607 | INFO     | 
[2026-01-09 13:31:37] 2026-01-09 18:30:51,608 | INFO     | architecture information:
[2026-01-09 13:31:37] 2026-01-09 18:30:51,608 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:31:37] 2026-01-09 18:30:51,622 | INFO     | cat /etc/os-release:
[2026-01-09 13:31:37] NAME="CentOS Linux"
[2026-01-09 13:31:37] VERSION="7 (Core)"
[2026-01-09 13:31:37] ID="centos"
[2026-01-09 13:31:37] ID_LIKE="rhel fedora"
[2026-01-09 13:31:37] VERSION_ID="7"
[2026-01-09 13:31:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:31:37] ANSI_COLOR="0;31"
[2026-01-09 13:31:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:31:37] HOME_URL="https://www.centos.org/"
[2026-01-09 13:31:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:31:37] 
[2026-01-09 13:31:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:31:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:31:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:31:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:31:37] 
[2026-01-09 13:31:37] 2026-01-09 18:30:51,623 | INFO     | ***************************************
[2026-01-09 13:31:37] 2026-01-09 18:30:52,126 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 13:31:37] 2026-01-09 18:30:52,142 | INFO     | sufficient remaining disk space (29307699200 B)
[2026-01-09 13:31:37] 2026-01-09 18:30:52,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:31:37] 2026-01-09 18:30:52,143 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:31:37] 2026-01-09 18:30:52,143 | INFO     | update_server=False
[2026-01-09 13:31:37] 2026-01-09 18:30:52,143 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:31:37] 2026-01-09 18:30:52,143 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:31:37] 2026-01-09 18:30:52,144 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:31:37] 2026-01-09 18:30:52,420 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:31:37] 2026-01-09 18:30:52,420 | INFO     | aborting loop
[2026-01-09 13:31:37] 2026-01-09 18:30:52,546 | INFO     | all payload control threads have been joined
[2026-01-09 13:31:37] 2026-01-09 18:30:52,554 | INFO     | all data control threads have been joined
[2026-01-09 13:31:37] 2026-01-09 18:30:53,148 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:53,148 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:53,303 | INFO     | all job control threads have been joined
[2026-01-09 13:31:37] 2026-01-09 18:30:53,426 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:53,528 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:53,552 | INFO     | [payload] control thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:53,559 | INFO     | [data] control thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:53,617 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:54,149 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:54,185 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:54,251 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:31:37] 2026-01-09 18:30:54,308 | INFO     | [job] control thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:54,325 | INFO     | [job] validate thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:54,408 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:54,466 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:54,512 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:30:58,256 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:31:02,287 | INFO     | job.realtimelogging is not enabled
[2026-01-09 13:31:37] 2026-01-09 18:31:03,292 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:31:37] 2026-01-09 18:31:22,619 | INFO     | PID=12710 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:31:37] 2026-01-09 18:31:22,619 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:31:37] 2026-01-09 18:31:22,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:31:37] 2026-01-09 18:31:22,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:31:37] 2026-01-09 18:31:30,776 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:31:37] 2026-01-09 18:31:32,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140161217791808)>', '<ExcThread(monitor, started 140160335337216)>']
[2026-01-09 13:31:37] 2026-01-09 18:31:32,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:31:37] 2026-01-09 18:31:32,670 | INFO     | [monitor] control thread has ended
[2026-01-09 13:31:37] 2026-01-09 18:31:37,064 | INFO     | all workflow threads have been joined
[2026-01-09 13:31:37] 2026-01-09 18:31:37,064 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:31:37] 2026-01-09 18:31:37,064 | INFO     | traces error code: 0
[2026-01-09 13:31:37] 2026-01-09 18:31:37,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:31:37] 2026-01-09 18:31:37,165 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:31:37] 2026-01-09 18:31:37,169 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:31:37] 2026-01-09 18:31:37,173 [wrapper] pilotpid: 12710
[2026-01-09 13:31:37] 2026-01-09 18:31:37,177 [wrapper] Pilot exit status: 0
[2026-01-09 13:31:37] 2026-01-09 18:31:37,193 [wrapper] pandaids: 6963168936 6963168936
[2026-01-09 13:31:37] 2026-01-09 18:31:37,236 [wrapper] cleanup supervisor_pilot 18215 12711
[2026-01-09 13:31:37] 2026-01-09 18:31:37,240 [wrapper] Test setup, not cleaning
[2026-01-09 13:31:37] 2026-01-09 18:31:37,244 [wrapper] apfmon messages muted
[2026-01-09 13:31:37] 2026-01-09 18:31:37,248 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:31:37] 2026-01-09 18:31:37,252 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:31:37]  *** Error codes and diagnostics ***
[2026-01-09 13:31:37]     "exeErrorCode": 0,
[2026-01-09 13:31:37]     "exeErrorDiag": "",
[2026-01-09 13:31:37]     "pilotErrorCode": 0,
[2026-01-09 13:31:37]     "pilotErrorDiag": "",
[2026-01-09 13:31:37]  *** Listing of results directory ***
[2026-01-09 13:31:37] total 665216
[2026-01-09 13:31:37] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 13:31:37] -rwx------ 1 boincer umatlas     36322 Jan  8 19:58 runpilot2-wrapper.sh
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 20:01 queuedata.json
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas       100 Jan  9 10:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:31:37] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 10:15 run_atlas
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas       105 Jan  9 10:15 job.xml
[2026-01-09 13:31:37] -rw-r--r-- 3 boincer umatlas 225825360 Jan  9 10:15 EVNT.47898824._001397.pool.root.1
[2026-01-09 13:31:37] -rw-r--r-- 3 boincer umatlas 225825360 Jan  9 10:15 ATLAS.root_0
[2026-01-09 13:31:37] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 10:15 start_atlas.sh
[2026-01-09 13:31:37] drwxrwx--x 2 boincer umatlas      4096 Jan  9 10:15 shared
[2026-01-09 13:31:37] -rw-r--r-- 2 boincer umatlas    592403 Jan  9 10:15 input.tar.gz
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas         0 Jan  9 10:15 boinc_lockfile
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 11:49 pandaJob.out
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas        57 Jan  9 11:49 setup.sh.local
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas    989356 Jan  9 11:49 agis_schedconf.cvmfs.json
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas      5954 Jan  9 13:27 init_data.xml
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas 223071055 Jan  9 13:30 HITS.47898826._036463.pool.root.1
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas       532 Jan  9 13:30 boinc_task_state.xml
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas      1046 Jan  9 13:30 memory_monitor_summary.json
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas   1516240 Jan  9 13:30 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas    409002 Jan  9 13:30 log.47898826._036463.job.log.tgz.1
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas        96 Jan  9 13:30 pilot_heartbeat.json
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas      7851 Jan  9 13:30 heartbeat.json
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas        29 Jan  9 13:31 wrapper_checkpoint.txt
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 13:31 boinc_mmap_file
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas      4818 Jan  9 13:31 pilotlog.txt
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas    866243 Jan  9 13:31 log.47898826._036463.job.log.1
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas       357 Jan  9 13:31 output.list
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas       620 Jan  9 13:31 runtime_log
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas   1290240 Jan  9 13:31 result.tar.gz
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas      9429 Jan  9 13:31 runtime_log.err
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas       784 Jan  9 13:31 hlnMDmN0Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2tlKDmj1xH3n.diag
[2026-01-09 13:31:37] -rw-r--r-- 1 boincer umatlas     23292 Jan  9 13:31 stderr.txt
[2026-01-09 13:31:37] HITS file was successfully produced:
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas 223071055 Jan  9 13:30 shared/HITS.pool.root.1
[2026-01-09 13:31:37]  *** Contents of shared directory: ***
[2026-01-09 13:31:37] total 440236
[2026-01-09 13:31:37] -rw-r--r-- 3 boincer umatlas 225825360 Jan  9 10:15 ATLAS.root_0
[2026-01-09 13:31:37] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 10:15 start_atlas.sh
[2026-01-09 13:31:37] -rw-r--r-- 2 boincer umatlas    592403 Jan  9 10:15 input.tar.gz
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas 223071055 Jan  9 13:30 HITS.pool.root.1
[2026-01-09 13:31:37] -rw------- 1 boincer umatlas   1290240 Jan  9 13:31 result.tar.gz
13:31:38 (8659): run_atlas exited; CPU time 66961.093948
13:31:38 (8659): called boinc_finish(0)

</stderr_txt>
]]>

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