Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:07:18 (1142883): wrapper (7.7.26015): starting
07:07:18 (1142883): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 07:07:18] Arguments: --nthreads 12
[2026-01-09 07:07:18] Threads: 12
[2026-01-09 07:07:18] Checking for CVMFS
[2026-01-09 07:07:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:07:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:07:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:07:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:07:21] 2.11.5.0 3990553 56725 146924 154946 1 288 25405402 45568001 12303 130560 0 358825101 99.793 201426759 22689 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-01-09 07:07:21] CVMFS is ok
[2026-01-09 07:07:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:07:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:07:21] Further information can be found at the LHC@home message board.
[2026-01-09 07:07:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:07:21] Checking for apptainer binary...
[2026-01-09 07:07:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:07:21] Running /usr/bin/apptainer --version
[2026-01-09 07:07:21] apptainer version 1.4.1-1.el9
[2026-01-09 07:07:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:07:22] wns0082.triumf.lcg
[2026-01-09 07:07:22] apptainer works
[2026-01-09 07:07:22] Set ATHENA_PROC_NUMBER=12
[2026-01-09 07:07:22] Set ATHENA_CORE_NUMBER=12
[2026-01-09 07:07:22] Starting ATLAS job with PandaID=6963197068
[2026-01-09 07:07:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:12:48]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:12:48] 2026-01-09 15:11:57,709 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:12:48] 2026-01-09 15:11:57,709 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:12:48] 2026-01-09 15:11:57,710 | WARNING  | wrong length of table data, x=[1767971326.0, 1767971387.0], y=[1720.0, 254363.0] (must be same and length>=4)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | could have reported an average CPU frequency of 2685 MHz (4 samples)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | ..............................
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . Timing measurements:
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . get job = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . initial setup = 4 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . payload setup = 11 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . stage-in = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . payload execution = 78 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . stage-out = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . log creation = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | ..............................
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 07:12:48] 2026-01-09 15:11:57,732 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963197068/pilotlog.txt
[2026-01-09 07:12:48] 2026-01-09 15:11:57,743 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-09 07:12:48] - Log from pilotlog.txt -
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963197068/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | INFO     | extracted standard info from prmon json
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 07:12:48] 2026-01-09 15:11:57,709 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:12:48] 2026-01-09 15:11:57,709 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:12:48] 2026-01-09 15:11:57,710 | WARNING  | wrong length of table data, x=[1767971326.0, 1767971387.0], y=[1720.0, 254363.0] (must be same and length>=4)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | could have reported an average CPU frequency of 2685 MHz (4 samples)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | ..............................
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . Timing measurements:
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . get job = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . initial setup = 4 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . payload setup = 11 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . stage-in = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . payload execution = 78 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . stage-out = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . log creation = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | ..............................
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 07:12:48] 2026-01-09 15:11:57,732 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963197068/pilotlog.txt
[2026-01-09 07:12:48] 2026-01-09 15:11:57,743 | WARNING  | 
[2026-01-09 07:12:48] [begin log extracts]
[2026-01-09 07:12:48] - Log from pilotlog.txt -
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963197068/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | INFO     | extracted standard info from prmon json
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 07:12:48] 2026-01-09 15:11:57,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 07:12:48] 2026-01-09 15:11:57,709 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:12:48] 2026-01-09 15:11:57,709 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:12:48] 2026-01-09 15:11:57,710 | WARNING  | wrong length of table data, x=[1767971326.0, 1767971387.0], y=[1720.0, 254363.0] (must be same and length>=4)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | could have reported an average CPU frequency of 2685 MHz (4 samples)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | ..............................
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . Timing measurements:
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . get job = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . initial setup = 4 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . payload setup = 11 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . stage-in = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . payload execution = 78 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . stage-out = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | . log creation = 0 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | ..............................
[2026-01-09 07:12:48] 2026-01-09 15:11:57,711 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 07:12:48] 2026-01-09 15:11:57,732 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963197068/pilotlog.txt
[2026-01-09 07:12:48] [end log extracts]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,744 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,745 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-09 07:12:48] 2026-01-09 15:11:57,948 | INFO     | 
[2026-01-09 07:12:48] 2026-01-09 15:11:57,948 | INFO     | job summary report
[2026-01-09 07:12:48] 2026-01-09 15:11:57,948 | INFO     | --------------------------------------------------
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | PanDA job id: 6963197068
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | task id: 47962010
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-09 07:09:44,753 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | pilot state: failed 
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | transexitcode: 65
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | exeerrorcode: 65
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | exitcode: 65
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | cpuconsumptiontime: 38 s
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | nevents: 0
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | neventsw: 0
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | pid: 1153187
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | pgrp: 1153187
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | corecount: 12
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | event service: False
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | sizes: {0: 2284390, 1: 2284645, 12: 2284645, 19: 2284935, 23: 2284963, 95: 2314968, 96: 2314968, 220: 2315134}
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | --------------------------------------------------
[2026-01-09 07:12:48] 2026-01-09 15:11:57,949 | INFO     | 
[2026-01-09 07:12:48] 2026-01-09 15:11:57,950 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-09 07:12:48] 2026-01-09 15:11:57,963 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,965 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,965 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,965 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,965 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:12:48] 2026-01-09 15:11:57,965 | INFO     | job 6963197068 has completed (purged errors)
[2026-01-09 07:12:48] 2026-01-09 15:11:57,965 | INFO     | overall cleanup function is called
[2026-01-09 07:12:48] 2026-01-09 15:11:58,973 | INFO     | --- collectZombieJob: --- 10, [1153187]
[2026-01-09 07:12:48] 2026-01-09 15:11:58,973 | INFO     | zombie collector waiting for pid 1153187
[2026-01-09 07:12:48] 2026-01-09 15:11:58,973 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:12:48] 2026-01-09 15:11:58,973 | INFO     | collected zombie processes
[2026-01-09 07:12:48] 2026-01-09 15:11:58,973 | INFO     | will attempt to kill all subprocesses of pid=1153187
[2026-01-09 07:12:48] 2026-01-09 15:11:59,323 | INFO     | process IDs to be killed: [1153187] (in reverse order)
[2026-01-09 07:12:48] 2026-01-09 15:11:59,403 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:12:48] 2026-01-09 15:11:59,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:12:48] 2026-01-09 15:11:59,418 | INFO     | did not find any defunct processes belonging to 1153187
[2026-01-09 07:12:48] 2026-01-09 15:11:59,433 | INFO     | did not find any defunct processes belonging to 1153187
[2026-01-09 07:12:48] 2026-01-09 15:11:59,434 | INFO     | ready for new job
[2026-01-09 07:12:48] 2026-01-09 15:11:59,434 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:12:48] 2026-01-09 15:11:59,435 | INFO     | ***************************************
[2026-01-09 07:12:48] 2026-01-09 15:11:59,435 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:12:48] 2026-01-09 15:11:59,435 | INFO     | ***************************************
[2026-01-09 07:12:48] 2026-01-09 15:11:59,435 | INFO     | 
[2026-01-09 07:12:48] 2026-01-09 15:11:59,437 | INFO     | architecture information:
[2026-01-09 07:12:48] 2026-01-09 15:11:59,448 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:12:48] 2026-01-09 15:11:59,555 | INFO     | cat /etc/os-release:
[2026-01-09 07:12:48] NAME="CentOS Linux"
[2026-01-09 07:12:48] VERSION="7 (Core)"
[2026-01-09 07:12:48] ID="centos"
[2026-01-09 07:12:48] ID_LIKE="rhel fedora"
[2026-01-09 07:12:48] VERSION_ID="7"
[2026-01-09 07:12:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:12:48] ANSI_COLOR="0;31"
[2026-01-09 07:12:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:12:48] HOME_URL="https://www.centos.org/"
[2026-01-09 07:12:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:12:48] 
[2026-01-09 07:12:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:12:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:12:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:12:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:12:48] 
[2026-01-09 07:12:48] 2026-01-09 15:11:59,555 | INFO     | ***************************************
[2026-01-09 07:12:48] 2026-01-09 15:12:00,059 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-09 07:12:48] 2026-01-09 15:12:00,407 | INFO     | sufficient remaining disk space (1903656173568 B)
[2026-01-09 07:12:48] 2026-01-09 15:12:00,407 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:12:48] 2026-01-09 15:12:00,407 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:12:48] 2026-01-09 15:12:00,407 | INFO     | update_server=False
[2026-01-09 07:12:48] 2026-01-09 15:12:00,407 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:12:48] 2026-01-09 15:12:00,409 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:12:48] 2026-01-09 15:12:00,954 | INFO     | all payload control threads have been joined
[2026-01-09 07:12:48] 2026-01-09 15:12:01,121 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:12:48] 2026-01-09 15:12:01,121 | INFO     | aborting loop
[2026-01-09 07:12:48] 2026-01-09 15:12:01,218 | INFO     | all job control threads have been joined
[2026-01-09 07:12:48] 2026-01-09 15:12:01,278 | INFO     | all data control threads have been joined
[2026-01-09 07:12:48] 2026-01-09 15:12:01,414 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:01,750 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:01,764 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:12:48] 2026-01-09 15:12:01,797 | INFO     | [job] validate thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:01,880 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:01,960 | INFO     | [payload] control thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:01,962 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,127 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,224 | INFO     | [job] control thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,293 | INFO     | [data] control thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,416 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,502 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,502 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,612 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,844 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:02,963 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:12:48] 2026-01-09 15:12:03,969 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:05,772 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:12:48] 2026-01-09 15:12:29,766 | INFO     | PID=1146547 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 07:12:48] 2026-01-09 15:12:29,766 | INFO     | .. there are 21 such processes running
[2026-01-09 07:12:48] 2026-01-09 15:12:29,766 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:12:48] 2026-01-09 15:12:29,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:12:48] 2026-01-09 15:12:29,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:12:48] 2026-01-09 15:12:40,572 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:12:48] 2026-01-09 15:12:42,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140110267086656)>', '<ExcThread(monitor, started 140109609428736)>']
[2026-01-09 07:12:48] 2026-01-09 15:12:42,844 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:12:48] 2026-01-09 15:12:42,844 | INFO     | [monitor] control thread has ended
[2026-01-09 07:12:48] 2026-01-09 15:12:47,424 | INFO     | all workflow threads have been joined
[2026-01-09 07:12:48] 2026-01-09 15:12:47,424 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:12:48] 2026-01-09 15:12:47,425 | INFO     | traces error code: 0
[2026-01-09 07:12:48] 2026-01-09 15:12:47,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:12:48] 2026-01-09 15:12:47,759 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:12:48] 2026-01-09 15:12:47,762 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:12:48] 2026-01-09 15:12:47,764 [wrapper] pilotpid: 1146547
[2026-01-09 07:12:48] 2026-01-09 15:12:47,766 [wrapper] Pilot exit status: 0
[2026-01-09 07:12:48] 2026-01-09 15:12:47,787 [wrapper] pandaids: 6963197068
[2026-01-09 07:12:48] 2026-01-09 15:12:47,824 [wrapper] cleanup supervisor_pilot 1146553 1146548
[2026-01-09 07:12:48] 2026-01-09 15:12:47,826 [wrapper] Test setup, not cleaning
[2026-01-09 07:12:48] 2026-01-09 15:12:47,828 [wrapper] apfmon messages muted
[2026-01-09 07:12:48] 2026-01-09 15:12:47,830 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:12:48] 2026-01-09 15:12:47,832 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:12:48]  *** Error codes and diagnostics ***
[2026-01-09 07:12:48]     "exeErrorCode": 65,
[2026-01-09 07:12:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2026-01-09 07:12:48]     "pilotErrorCode": 1305,
[2026-01-09 07:12:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2026-01-09 07:12:48]  *** Listing of results directory ***
[2026-01-09 07:12:48] total 387724
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc    579449 Jan  8 23:13 pilot3.tar.gz
[2026-01-09 07:12:48] -rwx------. 1 boinc boinc     36322 Jan  8 23:13 runpilot2-wrapper.sh
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc      5112 Jan  8 23:13 queuedata.json
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc       100 Jan  9 07:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:12:48] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 07:07 run_atlas
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc       105 Jan  9 07:07 job.xml
[2026-01-09 07:12:48] -rw-r--r--. 2 boinc boinc 392826066 Jan  9 07:07 EVNT.47962006._000063.pool.root.1
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc      6595 Jan  9 07:07 init_data.xml
[2026-01-09 07:12:48] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:07 start_atlas.sh
[2026-01-09 07:12:48] drwxrwx--x. 2 boinc boinc      4096 Jan  9 07:07 shared
[2026-01-09 07:12:48] -rw-r--r--. 2 boinc boinc    592611 Jan  9 07:07 input.tar.gz
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc         0 Jan  9 07:07 boinc_lockfile
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc      2891 Jan  9 07:07 pandaJob.out
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc    989377 Jan  9 07:07 agis_schedconf.cvmfs.json
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc   1516240 Jan  9 07:07 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:12:48] drwx------. 5 boinc boinc      4096 Jan  9 07:07 pilot3
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc       524 Jan  9 07:09 boinc_task_state.xml
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc       987 Jan  9 07:09 memory_monitor_summary.json
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc     49262 Jan  9 07:09 log.47962010._000741.job.log.tgz.1
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc        95 Jan  9 07:11 pilot_heartbeat.json
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc     10330 Jan  9 07:11 heartbeat.json
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc      4823 Jan  9 07:12 pilotlog.txt
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc      8192 Jan  9 07:12 boinc_mmap_file
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc     96340 Jan  9 07:12 log.47962010._000741.job.log.1
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc        23 Jan  9 07:12 wrapper_checkpoint.txt
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc       186 Jan  9 07:12 output.list
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc       620 Jan  9 07:12 runtime_log
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc    163840 Jan  9 07:12 result.tar.gz
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc       645 Jan  9 07:12 vUtNDm3rLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8EhKDmvFnrbm.diag
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc      8636 Jan  9 07:12 runtime_log.err
[2026-01-09 07:12:48] -rw-r--r--. 1 boinc boinc     22360 Jan  9 07:12 stderr.txt
[2026-01-09 07:12:48] No HITS result produced
[2026-01-09 07:12:48]  *** Contents of shared directory: ***
[2026-01-09 07:12:48] total 384380
[2026-01-09 07:12:48] -rw-r--r--. 2 boinc boinc 392826066 Jan  9 07:07 ATLAS.root_0
[2026-01-09 07:12:48] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:07 start_atlas.sh
[2026-01-09 07:12:48] -rw-r--r--. 2 boinc boinc    592611 Jan  9 07:07 input.tar.gz
[2026-01-09 07:12:48] -rw-------. 1 boinc boinc    163840 Jan  9 07:12 result.tar.gz
07:12:50 (1142883): run_atlas exited; CPU time 42.152318
07:12:50 (1142883): called boinc_finish(0)

</stderr_txt>
]]>

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