Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:50:13 (242767): wrapper (7.7.26015): starting
11:50:13 (242767): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 11:50:13] Arguments: --nthreads 3
[2026-01-10 11:50:13] Threads: 3
[2026-01-10 11:50:13] Checking for CVMFS
[2026-01-10 11:50:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:50:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:50:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:50:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:50:13] 2.9.2.0 185998 138176 108728 154976 3 57 20394441 36864001 12 130560 1 43292685 99.970 4714483 1601 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 11:50:13] CVMFS is ok
[2026-01-10 11:50:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:50:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:50:13] Further information can be found at the LHC@home message board.
[2026-01-10 11:50:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:50:13] Checking for apptainer binary...
[2026-01-10 11:50:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:50:13] Running /usr/bin/apptainer --version
[2026-01-10 11:50:13] apptainer version 1.4.1-1.1
[2026-01-10 11:50:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:50:13] thA387a
[2026-01-10 11:50:13] apptainer works
[2026-01-10 11:50:13] Set ATHENA_PROC_NUMBER=3
[2026-01-10 11:50:13] Set ATHENA_CORE_NUMBER=3
[2026-01-10 11:50:13] Starting ATLAS job with PandaID=6963168815
[2026-01-10 11:50:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:37:31]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:37:31] 2026-01-10 12:36:27,959 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:37:31] 2026-01-10 12:36:28,443 | INFO     | all job control threads have been joined
[2026-01-10 13:37:31] 2026-01-10 12:36:28,640 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:37:31] 2026-01-10 12:36:28,640 | INFO     | aborting loop
[2026-01-10 13:37:31] 2026-01-10 12:36:28,644 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:28,644 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:28,739 | INFO     | [data] control thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:28,796 | INFO     | [payload] control thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:28,966 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,313 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,345 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,449 | INFO     | [job] control thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,646 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,913 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,914 | INFO     | [job] validate thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,965 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:29,977 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:30,006 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:30,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:37:31] 2026-01-10 12:36:34,490 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:38,069 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:37:31] 2026-01-10 12:36:39,075 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:37:31] 2026-01-10 12:36:57,980 | INFO     | PID=246491 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 13:37:31] 2026-01-10 12:36:57,981 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:37:31] 2026-01-10 12:36:57,981 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:37:31] 2026-01-10 12:36:57,981 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:37:31] 2026-01-10 12:37:26,261 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:37:31] 2026-01-10 12:37:26,301 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140198629906240)>', '<ExcThread(monitor, started 140198348293888)>']
[2026-01-10 13:37:31] 2026-01-10 12:37:27,134 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:37:31] 2026-01-10 12:37:27,134 | INFO     | [monitor] control thread has ended
[2026-01-10 13:37:31] 2026-01-10 12:37:31,327 | INFO     | all workflow threads have been joined
[2026-01-10 13:37:31] 2026-01-10 12:37:31,327 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:37:31] 2026-01-10 12:37:31,328 | INFO     | traces error code: 0
[2026-01-10 13:37:31] 2026-01-10 12:37:31,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:37:31] 2026-01-10 12:37:31,378 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:37:31] 2026-01-10 12:37:31,380 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:37:31] 2026-01-10 12:37:31,382 [wrapper] pilotpid: 246491
[2026-01-10 13:37:31] 2026-01-10 12:37:31,385 [wrapper] Pilot exit status: 0
[2026-01-10 13:37:31] 2026-01-10 12:37:31,392 [wrapper] pandaids: 6963168815
[2026-01-10 13:37:31] 2026-01-10 12:37:31,409 [wrapper] cleanup supervisor_pilot  267699 246492
[2026-01-10 13:37:31] 2026-01-10 12:37:31,411 [wrapper] Test setup, not cleaning
[2026-01-10 13:37:31] 2026-01-10 12:37:31,413 [wrapper] apfmon messages muted
[2026-01-10 13:37:31] 2026-01-10 12:37:31,416 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:37:31] 2026-01-10 12:37:31,418 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:37:31]  *** Error codes and diagnostics ***
[2026-01-10 13:37:31]     "exeErrorCode": 0,
[2026-01-10 13:37:31]     "exeErrorDiag": "",
[2026-01-10 13:37:31]     "pilotErrorCode": 0,
[2026-01-10 13:37:31]     "pilotErrorDiag": "",
[2026-01-10 13:37:31]  *** Listing of results directory ***
[2026-01-10 13:37:31] total 431144
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 13:37:31] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc       100 Jan 10 11:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:37:31] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 11:50 run_atlas
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc       105 Jan 10 11:50 job.xml
[2026-01-10 13:37:31] -rw-r--r-- 2 boinc boinc 223485985 Jan 10 11:50 EVNT.47898824._001392.pool.root.1
[2026-01-10 13:37:31] -rw-r--r-- 2 boinc boinc    592400 Jan 10 11:50 input.tar.gz
[2026-01-10 13:37:31] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:50 start_atlas.sh
[2026-01-10 13:37:31] drwxrwx--x 2 boinc boinc      4096 Jan 10 11:50 shared
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:50 boinc_setup_complete
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc      6440 Jan 10 11:50 init_data.xml
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:50 boinc_lockfile
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc      2519 Jan 10 11:50 pandaJob.out
[2026-01-10 13:37:31] -rw------- 1 boinc boinc    989548 Jan 10 11:50 agis_schedconf.cvmfs.json
[2026-01-10 13:37:31] -rw------- 1 boinc boinc   1516240 Jan 10 11:50 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:37:31] drwx------ 5 boinc boinc      4096 Jan 10 11:50 pilot3
[2026-01-10 13:37:31] -rw------- 1 boinc boinc 211692651 Jan 10 13:36 HITS.47898826._036342.pool.root.1
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc       529 Jan 10 13:36 boinc_task_state.xml
[2026-01-10 13:37:31] -rw------- 1 boinc boinc      1020 Jan 10 13:36 memory_monitor_summary.json
[2026-01-10 13:37:31] -rw------- 1 boinc boinc    284609 Jan 10 13:36 log.47898826._036342.job.log.tgz.1
[2026-01-10 13:37:31] -rw------- 1 boinc boinc      7759 Jan 10 13:36 heartbeat.json
[2026-01-10 13:37:31] -rw------- 1 boinc boinc        95 Jan 10 13:36 pilot_heartbeat.json
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc      8192 Jan 10 13:37 boinc_mmap_file
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc        27 Jan 10 13:37 wrapper_checkpoint.txt
[2026-01-10 13:37:31] -rw------- 1 boinc boinc      4823 Jan 10 13:37 pilotlog.txt
[2026-01-10 13:37:31] -rw------- 1 boinc boinc    921132 Jan 10 13:37 log.47898826._036342.job.log.1
[2026-01-10 13:37:31] -rw------- 1 boinc boinc       357 Jan 10 13:37 output.list
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc       620 Jan 10 13:37 runtime_log
[2026-01-10 13:37:31] -rw------- 1 boinc boinc   1228800 Jan 10 13:37 result.tar.gz
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc      8902 Jan 10 13:37 runtime_log.err
[2026-01-10 13:37:31] -rw------- 1 boinc boinc       660 Jan 10 13:37 p64NDmC0Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpegKDm7Vau5m.diag
[2026-01-10 13:37:31] -rw-r--r-- 1 boinc boinc      6957 Jan 10 13:37 stderr.txt
[2026-01-10 13:37:31] HITS file was successfully produced:
[2026-01-10 13:37:31] -rw------- 1 boinc boinc 211692651 Jan 10 13:36 shared/HITS.pool.root.1
[2026-01-10 13:37:31]  *** Contents of shared directory: ***
[2026-01-10 13:37:31] total 426788
[2026-01-10 13:37:31] -rw-r--r-- 2 boinc boinc 223485985 Jan 10 11:50 ATLAS.root_0
[2026-01-10 13:37:31] -rw-r--r-- 2 boinc boinc    592400 Jan 10 11:50 input.tar.gz
[2026-01-10 13:37:31] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:50 start_atlas.sh
[2026-01-10 13:37:31] -rw------- 1 boinc boinc 211692651 Jan 10 13:36 HITS.pool.root.1
[2026-01-10 13:37:31] -rw------- 1 boinc boinc   1228800 Jan 10 13:37 result.tar.gz
13:37:33 (242767): run_atlas exited; CPU time 18372.916380
13:37:33 (242767): called boinc_finish(0)

</stderr_txt>
]]>

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