Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:12:52 (3103484): wrapper (7.7.26015): starting
06:12:52 (3103484): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 06:12:52] Arguments: --nthreads 3
[2026-01-10 06:12:52] Threads: 3
[2026-01-10 06:12:52] Checking for CVMFS
[2026-01-10 06:12:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 06:12:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 06:12:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 06:12:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 06:12:53] 2.9.2.0 2438121 2672 84536 154968 1 57 20607948 36864001 0 130560 0 1756503 99.988 101764 5464 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 06:12:53] CVMFS is ok
[2026-01-10 06:12:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 06:12:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 06:12:53] Further information can be found at the LHC@home message board.
[2026-01-10 06:12:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:12:53] Checking for apptainer binary...
[2026-01-10 06:12:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 06:12:53] Running /usr/bin/apptainer --version
[2026-01-10 06:12:53] apptainer version 1.4.1-1.1
[2026-01-10 06:12:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:12:53] magicA252
[2026-01-10 06:12:53] apptainer works
[2026-01-10 06:12:53] Set ATHENA_PROC_NUMBER=3
[2026-01-10 06:12:53] Set ATHENA_CORE_NUMBER=3
[2026-01-10 06:12:53] Starting ATLAS job with PandaID=6963167806
[2026-01-10 06:12:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 08:09:12]  *** The last 200 lines of the pilot log: ***
[2026-01-10 08:09:12] 2026-01-10 07:08:36,987 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 08:09:12] 2026-01-10 07:08:36,987 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 08:09:12] 2026-01-10 07:08:36,988 | INFO     | did not find any defunct processes belonging to 3113688
[2026-01-10 08:09:12] 2026-01-10 07:08:36,989 | INFO     | did not find any defunct processes belonging to 3113688
[2026-01-10 08:09:12] 2026-01-10 07:08:36,990 | INFO     | ready for new job
[2026-01-10 08:09:12] 2026-01-10 07:08:36,990 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 08:09:12] 2026-01-10 07:08:36,990 | INFO     | ***************************************
[2026-01-10 08:09:12] 2026-01-10 07:08:36,990 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 08:09:12] 2026-01-10 07:08:36,991 | INFO     | ***************************************
[2026-01-10 08:09:12] 2026-01-10 07:08:36,991 | INFO     | 
[2026-01-10 08:09:12] 2026-01-10 07:08:36,991 | INFO     | architecture information:
[2026-01-10 08:09:12] 2026-01-10 07:08:36,991 | INFO     | executing command: cat /etc/os-release
[2026-01-10 08:09:12] 2026-01-10 07:08:37,000 | INFO     | cat /etc/os-release:
[2026-01-10 08:09:12] NAME="CentOS Linux"
[2026-01-10 08:09:12] VERSION="7 (Core)"
[2026-01-10 08:09:12] ID="centos"
[2026-01-10 08:09:12] ID_LIKE="rhel fedora"
[2026-01-10 08:09:12] VERSION_ID="7"
[2026-01-10 08:09:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 08:09:12] ANSI_COLOR="0;31"
[2026-01-10 08:09:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 08:09:12] HOME_URL="https://www.centos.org/"
[2026-01-10 08:09:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 08:09:12] 
[2026-01-10 08:09:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 08:09:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 08:09:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 08:09:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 08:09:12] 
[2026-01-10 08:09:12] 2026-01-10 07:08:37,001 | INFO     | ***************************************
[2026-01-10 08:09:12] 2026-01-10 07:08:37,504 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | INFO     | sufficient remaining disk space (385091633152 B)
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | INFO     | update_server=False
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 08:09:12] 2026-01-10 07:08:37,517 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 08:09:12] 2026-01-10 07:08:37,518 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 08:09:12] 2026-01-10 07:08:37,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 08:09:12] 2026-01-10 07:08:37,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 08:09:12] 2026-01-10 07:08:37,534 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 08:09:12] 2026-01-10 07:08:37,534 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 08:09:12] 2026-01-10 07:08:37,534 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:09:12] 2026-01-10 07:08:37,534 | INFO     | will abort loop
[2026-01-10 08:09:12] 2026-01-10 07:08:38,135 | INFO     | all data control threads have been joined
[2026-01-10 08:09:12] 2026-01-10 07:08:38,518 | INFO     | [job] retrieve thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:38,522 | INFO     | [job] queue monitor thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:38,539 | INFO     | [job] job monitor thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:38,563 | INFO     | [payload] validate_post thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:38,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 08:09:12] 2026-01-10 07:08:38,675 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:38,989 | INFO     | all payload control threads have been joined
[2026-01-10 08:09:12] 2026-01-10 07:08:38,995 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:39,039 | INFO     | all job control threads have been joined
[2026-01-10 08:09:12] 2026-01-10 07:08:39,141 | INFO     | [data] control thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:39,224 | INFO     | [data] copytool_in thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:39,436 | INFO     | [job] validate thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:39,537 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:39,634 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:39,800 | INFO     | [payload] failed_post thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:39,990 | INFO     | [payload] control thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:40,044 | INFO     | [job] control thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:40,668 | INFO     | [data] copytool_out thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:08:41,524 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 08:09:12] 2026-01-10 07:09:07,545 | INFO     | [monitor] cgroup control has ended
[2026-01-10 08:09:12] 2026-01-10 07:09:07,770 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140253320943424)>', '<ExcThread(monitor, started 140252693919488)>']
[2026-01-10 08:09:12] 2026-01-10 07:09:08,611 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 08:09:12] 2026-01-10 07:09:08,612 | INFO     | [monitor] control thread has ended
[2026-01-10 08:09:12] 2026-01-10 07:09:12,771 | INFO     | all workflow threads have been joined
[2026-01-10 08:09:12] 2026-01-10 07:09:12,771 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 08:09:12] 2026-01-10 07:09:12,771 | INFO     | traces error code: 0
[2026-01-10 08:09:12] 2026-01-10 07:09:12,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 08:09:12] 2026-01-10 07:09:12,822 [wrapper] ==== pilot stdout END ====
[2026-01-10 08:09:12] 2026-01-10 07:09:12,825 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 08:09:12] 2026-01-10 07:09:12,828 [wrapper] pilotpid: 3107215
[2026-01-10 08:09:12] 2026-01-10 07:09:12,830 [wrapper] Pilot exit status: 0
[2026-01-10 08:09:12] 2026-01-10 07:09:12,838 [wrapper] pandaids: 6963167806
[2026-01-10 08:09:12] 2026-01-10 07:09:12,856 [wrapper] cleanup supervisor_pilot 3128009 3107216
[2026-01-10 08:09:12] 2026-01-10 07:09:12,858 [wrapper] Test setup, not cleaning
[2026-01-10 08:09:12] 2026-01-10 07:09:12,861 [wrapper] apfmon messages muted
[2026-01-10 08:09:12] 2026-01-10 07:09:12,863 [wrapper] ==== wrapper stdout END ====
[2026-01-10 08:09:12] 2026-01-10 07:09:12,866 [wrapper] ==== wrapper stderr END ====
[2026-01-10 08:09:12]  *** Error codes and diagnostics ***
[2026-01-10 08:09:12]     "exeErrorCode": 0,
[2026-01-10 08:09:12]     "exeErrorDiag": "",
[2026-01-10 08:09:12]     "pilotErrorCode": 0,
[2026-01-10 08:09:12]     "pilotErrorDiag": "",
[2026-01-10 08:09:12]  *** Listing of results directory ***
[2026-01-10 08:09:12] total 437776
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 08:09:12] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc       100 Jan 10 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 08:09:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 06:12 run_atlas
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc       105 Jan 10 06:12 job.xml
[2026-01-10 08:09:12] -rw-r--r-- 2 boinc boinc 222853729 Jan 10 06:12 EVNT.47898824._001339.pool.root.1
[2026-01-10 08:09:12] -rw-r--r-- 2 boinc boinc    592398 Jan 10 06:12 input.tar.gz
[2026-01-10 08:09:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:12 start_atlas.sh
[2026-01-10 08:09:12] drwxrwx--x 2 boinc boinc      4096 Jan 10 06:12 shared
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:12 boinc_setup_complete
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc      6448 Jan 10 06:12 init_data.xml
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:12 boinc_lockfile
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc      2519 Jan 10 06:12 pandaJob.out
[2026-01-10 08:09:12] -rw------- 1 boinc boinc    989374 Jan 10 06:12 agis_schedconf.cvmfs.json
[2026-01-10 08:09:12] -rw------- 1 boinc boinc   1516240 Jan 10 06:12 agis_ddmendpoints.agis.ALL.json
[2026-01-10 08:09:12] drwx------ 5 boinc boinc      4096 Jan 10 06:12 pilot3
[2026-01-10 08:09:12] -rw------- 1 boinc boinc 218960186 Jan 10 08:08 HITS.47898826._036008.pool.root.1
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc       529 Jan 10 08:08 boinc_task_state.xml
[2026-01-10 08:09:12] -rw------- 1 boinc boinc      1020 Jan 10 08:08 memory_monitor_summary.json
[2026-01-10 08:09:12] -rw------- 1 boinc boinc    280746 Jan 10 08:08 log.47898826._036008.job.log.tgz.1
[2026-01-10 08:09:12] -rw------- 1 boinc boinc        95 Jan 10 08:08 pilot_heartbeat.json
[2026-01-10 08:09:12] -rw------- 1 boinc boinc      7761 Jan 10 08:08 heartbeat.json
[2026-01-10 08:09:12] -rw------- 1 boinc boinc      4742 Jan 10 08:09 pilotlog.txt
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc      8192 Jan 10 08:09 boinc_mmap_file
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc        27 Jan 10 08:09 wrapper_checkpoint.txt
[2026-01-10 08:09:12] -rw------- 1 boinc boinc    999605 Jan 10 08:09 log.47898826._036008.job.log.1
[2026-01-10 08:09:12] -rw------- 1 boinc boinc       357 Jan 10 08:09 output.list
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc       620 Jan 10 08:09 runtime_log
[2026-01-10 08:09:12] -rw------- 1 boinc boinc   1300480 Jan 10 08:09 result.tar.gz
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc      8912 Jan 10 08:09 runtime_log.err
[2026-01-10 08:09:12] -rw------- 1 boinc boinc       662 Jan 10 08:09 YDRNDm0zFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRcgKDmL6ZKGo.diag
[2026-01-10 08:09:12] -rw-r--r-- 1 boinc boinc     10125 Jan 10 08:09 stderr.txt
[2026-01-10 08:09:12] HITS file was successfully produced:
[2026-01-10 08:09:12] -rw------- 1 boinc boinc 218960186 Jan 10 08:08 shared/HITS.pool.root.1
[2026-01-10 08:09:12]  *** Contents of shared directory: ***
[2026-01-10 08:09:12] total 433340
[2026-01-10 08:09:12] -rw-r--r-- 2 boinc boinc 222853729 Jan 10 06:12 ATLAS.root_0
[2026-01-10 08:09:12] -rw-r--r-- 2 boinc boinc    592398 Jan 10 06:12 input.tar.gz
[2026-01-10 08:09:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:12 start_atlas.sh
[2026-01-10 08:09:12] -rw------- 1 boinc boinc 218960186 Jan 10 08:08 HITS.pool.root.1
[2026-01-10 08:09:12] -rw------- 1 boinc boinc   1300480 Jan 10 08:09 result.tar.gz
08:09:34 (3103484): run_atlas exited; CPU time 20072.991118
08:09:34 (3103484): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN