Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:50:39 (8669): wrapper (7.7.26015): starting
17:50:39 (8669): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:50:39] Arguments: --nthreads 8
[2026-01-09 17:50:39] Threads: 8
[2026-01-09 17:50:39] Checking for CVMFS
[2026-01-09 17:50:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:50:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:50:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:50:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:50:40] 2.11.0.0 4265 129114 88716 154950 1 2 2740790 4096000 0 130560 2 7390000 99.371 7894166 505 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-09 17:50:40] CVMFS is ok
[2026-01-09 17:50:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:50:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:50:40] Further information can be found at the LHC@home message board.
[2026-01-09 17:50:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:50:40] Checking for apptainer binary...
[2026-01-09 17:50:40] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-09 17:50:40] apptainer is not installed, using version from CVMFS
[2026-01-09 17:50:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:50:40] WARNING: Environment variable TMPDIR already has value [/tmp/job_11008661/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node278
[2026-01-09 17:50:40] apptainer works
[2026-01-09 17:50:40] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:50:40] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:50:40] Starting ATLAS job with PandaID=6963167858
[2026-01-09 17:50:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11008661/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:54:57]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:54:57]  lfn=log.47898826._036060.job.log.tgz.1
[2026-01-09 18:54:57]  mtime=0
[2026-01-09 18:54:57]  protocol_id=None
[2026-01-09 18:54:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 18:54:57]  replicas=None
[2026-01-09 18:54:57]  scope=mc23_13p6TeV
[2026-01-09 18:54:57]  status=None
[2026-01-09 18:54:57]  status_code=0
[2026-01-09 18:54:57]  storage_token=
[2026-01-09 18:54:57]  surl=/tmp/job_11008661/atlas/pilot/slots/0/PanDA_Pilot-6963167858/log.47898826._036060.job.log.tgz.1
[2026-01-09 18:54:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/fe/log.47898826._036060.job.log.tgz.1
[2026-01-09 18:54:57]  workdir=None
[2026-01-09 18:54:57] ]
[2026-01-09 18:54:57] 2026-01-09 17:53:57,764 | INFO     | transferring file log.47898826._036060.job.log.tgz.1 from /tmp/job_11008661/atlas/pilot/slots/0/PanDA_Pilot-6963167858/log.47898826._036060.job.log.tgz.1 to /tmp/j
[2026-01-09 18:54:57] 2026-01-09 17:53:57,764 | INFO     | executing command: /usr/bin/env mv /tmp/job_11008661/atlas/pilot/slots/0/PanDA_Pilot-6963167858/log.47898826._036060.job.log.tgz.1 /tmp/job_11008661/atlas/pilot/sl
[2026-01-09 18:54:57] 2026-01-09 17:53:57,771 | INFO     | adding to output.list: log.47898826._036060.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/27/fe/log.47898826._036060.job.log.tg
[2026-01-09 18:54:57] 2026-01-09 17:53:57,772 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 18:54:57] 2026-01-09 17:53:57,772 | INFO     | summary of transferred files:
[2026-01-09 18:54:57] 2026-01-09 17:53:57,772 | INFO     |  -- lfn=log.47898826._036060.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 18:54:57] 2026-01-09 17:53:57,772 | INFO     | stage-out finished correctly
[2026-01-09 18:54:57] 2026-01-09 17:53:57,819 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 18:54:57] 2026-01-09 17:53:59,202 | INFO     | time since job start (3794s) is within the limit (349056.0s)
[2026-01-09 18:54:57] 2026-01-09 17:54:00,213 | INFO     | job 6963167858 has state=finished
[2026-01-09 18:54:57] 2026-01-09 17:54:00,213 | INFO     | preparing for final server update for job 6963167858 in state='finished'
[2026-01-09 18:54:57] 2026-01-09 17:54:00,213 | INFO     | this job has now completed (state=finished)
[2026-01-09 18:54:57] 2026-01-09 17:54:00,214 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 18:54:57] 2026-01-09 17:54:00,214 | INFO     | log transfer has been attempted: DONE
[2026-01-09 18:54:57] 2026-01-09 17:54:00,214 | INFO     | job 6963167858 has finished - writing final server update
[2026-01-09 18:54:57] 2026-01-09 17:54:00,214 | INFO     | total number of processed events: 400 (read)
[2026-01-09 18:54:57] 2026-01-09 17:54:00,214 | INFO     | executing command: lscpu
[2026-01-09 18:54:57] 2026-01-09 17:54:00,244 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 18:54:57] 2026-01-09 17:54:01,207 | INFO     | time since job start (3796s) is within the limit (349056.0s)
[2026-01-09 18:54:57] 2026-01-09 17:54:01,667 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 18:54:57] 2026-01-09 17:54:01,671 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2489.879375
[2026-01-09 18:54:57] 2026-01-09 17:54:01,677 | INFO     | using path: /tmp/job_11008661/atlas/pilot/slots/0/PanDA_Pilot-6963167858/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 18:54:57] 2026-01-09 17:54:01,677 | INFO     | extracted standard info from prmon json
[2026-01-09 18:54:57] 2026-01-09 17:54:01,677 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 18:54:57] 2026-01-09 17:54:01,677 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 18:54:57] 2026-01-09 17:54:01,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 18:54:57] 2026-01-09 17:54:01,677 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 18:54:57] 2026-01-09 17:54:01,678 | INFO     | fitting pss+swap vs Time
[2026-01-09 18:54:57] 2026-01-09 17:54:01,678 | INFO     | sum of square deviations: 51573060.0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,678 | INFO     | sum of deviations: -6012925855.0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,678 | INFO     | mean x: 1767979416.0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,678 | INFO     | mean y: 2628193.109090909
[2026-01-09 18:54:57] 2026-01-09 17:54:01,678 | INFO     | intersect: 206132129556.30533
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | chi2: 0.07830652490256317
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | current memory leak: -116.59 B/s (using 55 data points, chi2=0.08)
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | could have reported an average CPU frequency of 2476 MHz (6 samples)
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | ..............................
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . Timing measurements:
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . get job = 0 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . initial setup = 1 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . payload setup = 2 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . stage-in = 0 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . payload execution = 3774 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . stage-out = 0 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | . log creation = 0 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,679 | INFO     | ..............................
[2026-01-09 18:54:57] 2026-01-09 17:54:01,727 | INFO     | 
[2026-01-09 18:54:57] 2026-01-09 17:54:01,727 | INFO     | job summary report
[2026-01-09 18:54:57] 2026-01-09 17:54:01,727 | INFO     | --------------------------------------------------
[2026-01-09 18:54:57] 2026-01-09 17:54:01,727 | INFO     | PanDA job id: 6963167858
[2026-01-09 18:54:57] 2026-01-09 17:54:01,727 | INFO     | task id: 47898826
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | errors: (none)
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | pilot state: finished 
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | transexitcode: 0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | exeerrorcode: 0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | exeerrordiag: 
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | exitcode: 0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | exitmsg: OK
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | cpuconsumptiontime: 26794 s
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | nevents: 400
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | neventsw: 0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | pid: 19120
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | pgrp: 19120
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | corecount: 8
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | event service: False
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | sizes: {0: 2284097, 2: 2284359, 11: 2284387, 3780: 2319363, 3784: 2319501}
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | --------------------------------------------------
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | 
[2026-01-09 18:54:57] 2026-01-09 17:54:01,728 | INFO     | executing command: ls -lF /tmp/job_11008661/atlas/pilot/slots/0
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | job 6963167858 has completed (purged errors)
[2026-01-09 18:54:57] 2026-01-09 17:54:01,737 | INFO     | overall cleanup function is called
[2026-01-09 18:54:57] 2026-01-09 17:54:02,209 | WARNING  | process 19120 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 18:54:57] 2026-01-09 17:54:02,285 | INFO     | using path: /tmp/job_11008661/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 18:54:57] 2026-01-09 17:54:02,373 | INFO     | number of running child processes to parent process 19120: 1
[2026-01-09 18:54:57] 2026-01-09 17:54:02,373 | INFO     | maximum number of monitored processes: 6
[2026-01-09 18:54:57] 2026-01-09 17:54:02,373 | INFO     | aborting job monitoring since job object (job id=6963167858) has expired
[2026-01-09 18:54:57] 2026-01-09 17:54:02,743 | INFO     | --- collectZombieJob: --- 10, [19120]
[2026-01-09 18:54:57] 2026-01-09 17:54:02,743 | INFO     | zombie collector waiting for pid 19120
[2026-01-09 18:54:57] 2026-01-09 17:54:02,743 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:54:57] 2026-01-09 17:54:02,743 | INFO     | collected zombie processes
[2026-01-09 18:54:57] 2026-01-09 17:54:02,743 | INFO     | will attempt to kill all subprocesses of pid=19120
[2026-01-09 18:54:57] 2026-01-09 17:54:02,831 | INFO     | process IDs to be killed: [19120] (in reverse order)
[2026-01-09 18:54:57] 2026-01-09 17:54:02,862 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:54:57] 2026-01-09 17:54:02,862 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:54:57] 2026-01-09 17:54:02,865 | INFO     | did not find any defunct processes belonging to 19120
[2026-01-09 18:54:57] 2026-01-09 17:54:02,868 | INFO     | did not find any defunct processes belonging to 19120
[2026-01-09 18:54:57] 2026-01-09 17:54:02,868 | INFO     | ready for new job
[2026-01-09 18:54:57] 2026-01-09 17:54:02,868 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:54:57] 2026-01-09 17:54:02,869 | INFO     | ***************************************
[2026-01-09 18:54:57] 2026-01-09 17:54:02,869 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:54:57] 2026-01-09 17:54:02,869 | INFO     | ***************************************
[2026-01-09 18:54:57] 2026-01-09 17:54:02,869 | INFO     | 
[2026-01-09 18:54:57] 2026-01-09 17:54:02,883 | INFO     | architecture information:
[2026-01-09 18:54:57] 2026-01-09 17:54:02,883 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:54:57] 2026-01-09 17:54:02,889 | INFO     | cat /etc/os-release:
[2026-01-09 18:54:57] NAME="CentOS Linux"
[2026-01-09 18:54:57] VERSION="7 (Core)"
[2026-01-09 18:54:57] ID="centos"
[2026-01-09 18:54:57] ID_LIKE="rhel fedora"
[2026-01-09 18:54:57] VERSION_ID="7"
[2026-01-09 18:54:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:54:57] ANSI_COLOR="0;31"
[2026-01-09 18:54:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:54:57] HOME_URL="https://www.centos.org/"
[2026-01-09 18:54:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:54:57] 
[2026-01-09 18:54:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:54:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:54:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:54:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:54:57] 
[2026-01-09 18:54:57] 2026-01-09 17:54:02,889 | INFO     | ***************************************
[2026-01-09 18:54:57] 2026-01-09 17:54:03,391 | INFO     | executing command: df -mP /tmp/job_11008661/atlas/pilot/slots/0
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | INFO     | sufficient remaining disk space (227032432640 B)
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | INFO     | update_server=False
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:54:57] 2026-01-09 17:54:03,397 | INFO     | aborting loop
[2026-01-09 18:54:57] 2026-01-09 17:54:03,539 | INFO     | all job control threads have been joined
[2026-01-09 18:54:57] 2026-01-09 17:54:03,869 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:54:57] 2026-01-09 17:54:04,071 | INFO     | all payload control threads have been joined
[2026-01-09 18:54:57] 2026-01-09 17:54:04,142 | INFO     | all data control threads have been joined
[2026-01-09 18:54:57] 2026-01-09 17:54:04,398 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:04,403 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:04,403 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:04,544 | INFO     | [job] control thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:04,813 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:04,992 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,077 | INFO     | [payload] control thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,147 | INFO     | [data] control thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,403 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,591 | INFO     | [job] validate thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,708 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,727 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,779 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:05,874 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:07,874 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:14,355 | INFO     | job.realtimelogging is not enabled
[2026-01-09 18:54:57] 2026-01-09 17:54:15,360 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:54:57] 2026-01-09 17:54:34,385 | INFO     | PID=12579 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 18:54:57] 2026-01-09 17:54:34,385 | INFO     | .. there are 2 such processes running
[2026-01-09 18:54:57] 2026-01-09 17:54:34,386 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:54:57] 2026-01-09 17:54:34,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:54:57] 2026-01-09 17:54:34,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:54:57] 2026-01-09 17:54:51,196 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:54:57] 2026-01-09 17:54:52,254 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-09 18:54:57] 2026-01-09 17:54:52,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:54:57] 2026-01-09 17:54:52,473 | INFO     | [monitor] control thread has ended
[2026-01-09 18:54:57] 2026-01-09 17:54:57,279 | INFO     | all workflow threads have been joined
[2026-01-09 18:54:57] 2026-01-09 17:54:57,279 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:54:57] 2026-01-09 17:54:57,279 | INFO     | traces error code: 0
[2026-01-09 18:54:57] 2026-01-09 17:54:57,279 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:54:57] 2026-01-09 17:54:57,333 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:54:57] 2026-01-09 17:54:57,334 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:54:57] 2026-01-09 17:54:57,335 [wrapper] pilotpid: 12579
[2026-01-09 18:54:57] 2026-01-09 17:54:57,336 [wrapper] Pilot exit status: 0
[2026-01-09 18:54:57] 2026-01-09 17:54:57,340 [wrapper] pandaids: 6963167858
[2026-01-09 18:54:57] 2026-01-09 17:54:57,362 [wrapper] cleanup supervisor_pilot 27961 12580
[2026-01-09 18:54:57] 2026-01-09 17:54:57,363 [wrapper] Test setup, not cleaning
[2026-01-09 18:54:57] 2026-01-09 17:54:57,364 [wrapper] apfmon messages muted
[2026-01-09 18:54:57] 2026-01-09 17:54:57,365 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:54:57] 2026-01-09 17:54:57,366 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:54:57]  *** Error codes and diagnostics ***
[2026-01-09 18:54:57]     "exeErrorCode": 0,
[2026-01-09 18:54:57]     "exeErrorDiag": "",
[2026-01-09 18:54:57]     "pilotErrorCode": 0,
[2026-01-09 18:54:57]     "pilotErrorDiag": "",
[2026-01-09 18:54:57]  *** Listing of results directory ***
[2026-01-09 18:54:57] total 431540
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 18:54:57] -rwx------ 1 mf493845 unix-user     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      5112 Jan  9 01:59 queuedata.json
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user       100 Jan  9 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:54:57] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  9 16:53 run_atlas
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user       105 Jan  9 16:53 job.xml
[2026-01-09 18:54:57] -rw-r--r-- 2 mf493845 unix-user    592398 Jan  9 17:50 input.tar.gz
[2026-01-09 18:54:57] -rw-r--r-- 2 mf493845 unix-user 223320349 Jan  9 17:50 EVNT.47898824._001341.pool.root.1
[2026-01-09 18:54:57] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 17:50 start_atlas.sh
[2026-01-09 18:54:57] drwxrwx--x 2 mf493845 unix-user       100 Jan  9 17:50 shared
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      6390 Jan  9 17:50 init_data.xml
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user         0 Jan  9 17:50 boinc_setup_complete
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      8192 Jan  9 17:50 boinc_mmap_file
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user         0 Jan  9 17:50 boinc_lockfile
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      2520 Jan  9 17:50 pandaJob.out
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user    989356 Jan  9 17:50 agis_schedconf.cvmfs.json
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user   1516240 Jan  9 17:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:54:57] drwx------ 5 mf493845 unix-user       440 Jan  9 17:50 pilot3
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user 212892356 Jan  9 18:53 HITS.47898826._036060.pool.root.1
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      1029 Jan  9 18:53 memory_monitor_summary.json
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user    312107 Jan  9 18:53 log.47898826._036060.job.log.tgz.1
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      7788 Jan  9 18:54 heartbeat.json
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user        95 Jan  9 18:54 pilot_heartbeat.json
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      4907 Jan  9 18:54 pilotlog.txt
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user    585692 Jan  9 18:54 log.47898826._036060.job.log.1
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user       357 Jan  9 18:54 output.list
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user       620 Jan  9 18:54 runtime_log
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user    921600 Jan  9 18:54 result.tar.gz
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user      9220 Jan  9 18:54 runtime_log.err
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user       644 Jan  9 18:54 NFFKDm1zFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm3cgKDm8oJgtm.diag
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user     22101 Jan  9 18:54 stderr.txt
[2026-01-09 18:54:57] HITS file was successfully produced:
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user 212892356 Jan  9 18:53 shared/HITS.pool.root.1
[2026-01-09 18:54:57]  *** Contents of shared directory: ***
[2026-01-09 18:54:57] total 427488
[2026-01-09 18:54:57] -rw-r--r-- 2 mf493845 unix-user    592398 Jan  9 17:50 input.tar.gz
[2026-01-09 18:54:57] -rw-r--r-- 2 mf493845 unix-user 223320349 Jan  9 17:50 ATLAS.root_0
[2026-01-09 18:54:57] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 17:50 start_atlas.sh
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user 212892356 Jan  9 18:53 HITS.pool.root.1
[2026-01-09 18:54:57] -rw------- 1 mf493845 unix-user    921600 Jan  9 18:54 result.tar.gz
18:54:59 (8669): run_atlas exited; CPU time 26835.947090
18:54:59 (8669): called boinc_finish(0)

</stderr_txt>
]]>

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