Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:03:17 (3166105): wrapper (7.7.26015): starting
06:03:17 (3166105): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 06:03:17] Arguments: --nthreads 3
[2026-01-10 06:03:17] Threads: 3
[2026-01-10 06:03:17] Checking for CVMFS
[2026-01-10 06:03:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 06:03:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 06:03:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 06:03:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 06:03:17] 2.9.2.0 2333934 3358 85556 154968 0 57 22308421 36864001 0 130560 0 2186318 99.989 123721 6439 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 06:03:17] CVMFS is ok
[2026-01-10 06:03:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 06:03:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 06:03:17] Further information can be found at the LHC@home message board.
[2026-01-10 06:03:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:03:17] Checking for apptainer binary...
[2026-01-10 06:03:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 06:03:17] Running /usr/bin/apptainer --version
[2026-01-10 06:03:17] apptainer version 1.4.1-1.1
[2026-01-10 06:03:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:03:17] magicA246
[2026-01-10 06:03:17] apptainer works
[2026-01-10 06:03:17] Set ATHENA_PROC_NUMBER=3
[2026-01-10 06:03:17] Set ATHENA_CORE_NUMBER=3
[2026-01-10 06:03:17] Starting ATLAS job with PandaID=6963167799
[2026-01-10 06:03:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:57:37]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:57:37] 2026-01-10 06:56:44,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:57:37] 2026-01-10 06:56:44,605 | INFO     | did not find any defunct processes belonging to 3176279
[2026-01-10 07:57:37] 2026-01-10 06:56:44,606 | INFO     | did not find any defunct processes belonging to 3176279
[2026-01-10 07:57:37] 2026-01-10 06:56:44,606 | INFO     | ready for new job
[2026-01-10 07:57:37] 2026-01-10 06:56:44,606 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:57:37] 2026-01-10 06:56:44,607 | INFO     | ***************************************
[2026-01-10 07:57:37] 2026-01-10 06:56:44,607 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:57:37] 2026-01-10 06:56:44,607 | INFO     | ***************************************
[2026-01-10 07:57:37] 2026-01-10 06:56:44,607 | INFO     | 
[2026-01-10 07:57:37] 2026-01-10 06:56:44,607 | INFO     | architecture information:
[2026-01-10 07:57:37] 2026-01-10 06:56:44,608 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:57:37] 2026-01-10 06:56:44,617 | INFO     | cat /etc/os-release:
[2026-01-10 07:57:37] NAME="CentOS Linux"
[2026-01-10 07:57:37] VERSION="7 (Core)"
[2026-01-10 07:57:37] ID="centos"
[2026-01-10 07:57:37] ID_LIKE="rhel fedora"
[2026-01-10 07:57:37] VERSION_ID="7"
[2026-01-10 07:57:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:57:37] ANSI_COLOR="0;31"
[2026-01-10 07:57:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:57:37] HOME_URL="https://www.centos.org/"
[2026-01-10 07:57:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:57:37] 
[2026-01-10 07:57:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:57:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:57:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:57:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:57:37] 
[2026-01-10 07:57:37] 2026-01-10 06:56:44,617 | INFO     | ***************************************
[2026-01-10 07:57:37] 2026-01-10 06:56:45,120 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 07:57:37] 2026-01-10 06:56:45,134 | INFO     | sufficient remaining disk space (383806078976 B)
[2026-01-10 07:57:37] 2026-01-10 06:56:45,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:57:37] 2026-01-10 06:56:45,134 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:57:37] 2026-01-10 06:56:45,134 | INFO     | update_server=False
[2026-01-10 07:57:37] 2026-01-10 06:56:45,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:57:37] 2026-01-10 06:56:45,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:57:37] 2026-01-10 06:56:45,150 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 07:57:37] 2026-01-10 06:56:45,150 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 07:57:37] 2026-01-10 06:56:45,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:57:37] 2026-01-10 06:56:45,150 | INFO     | will abort loop
[2026-01-10 07:57:37] 2026-01-10 06:56:45,288 | INFO     | all payload control threads have been joined
[2026-01-10 07:57:37] 2026-01-10 06:56:45,510 | INFO     | all job control threads have been joined
[2026-01-10 07:57:37] 2026-01-10 06:56:45,803 | INFO     | all data control threads have been joined
[2026-01-10 07:57:37] 2026-01-10 06:56:46,140 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:46,140 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:46,155 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:46,292 | INFO     | [payload] control thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:46,516 | INFO     | [job] control thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:46,532 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:46,553 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:57:37] 2026-01-10 06:56:46,808 | INFO     | [data] control thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:46,867 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:57:37] 2026-01-10 06:56:47,060 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:47,164 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:47,287 | INFO     | [job] validate thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:47,386 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:47,526 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:47,541 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:48,559 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:50,874 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:56:55,745 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:57:37] 2026-01-10 06:56:56,751 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:57:37] 2026-01-10 06:57:14,998 | INFO     | PID=3169831 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:57:37] 2026-01-10 06:57:14,998 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:57:37] 2026-01-10 06:57:14,998 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:57:37] 2026-01-10 06:57:14,998 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:57:37] 2026-01-10 06:57:30,990 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:57:37] 2026-01-10 06:57:31,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667479467840)>', '<ExcThread(monitor, started 139667135510272)>']
[2026-01-10 07:57:37] 2026-01-10 06:57:32,088 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:57:37] 2026-01-10 06:57:32,088 | INFO     | [monitor] control thread has ended
[2026-01-10 07:57:37] 2026-01-10 06:57:37,016 | INFO     | all workflow threads have been joined
[2026-01-10 07:57:37] 2026-01-10 06:57:37,016 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:57:37] 2026-01-10 06:57:37,016 | INFO     | traces error code: 0
[2026-01-10 07:57:37] 2026-01-10 06:57:37,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:57:37] 2026-01-10 06:57:37,071 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:57:37] 2026-01-10 06:57:37,073 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:57:37] 2026-01-10 06:57:37,076 [wrapper] pilotpid: 3169831
[2026-01-10 07:57:37] 2026-01-10 06:57:37,078 [wrapper] Pilot exit status: 0
[2026-01-10 07:57:37] 2026-01-10 06:57:37,086 [wrapper] pandaids: 6963167799
[2026-01-10 07:57:37] 2026-01-10 06:57:37,105 [wrapper] cleanup supervisor_pilot 3190607 3169832
[2026-01-10 07:57:37] 2026-01-10 06:57:37,107 [wrapper] Test setup, not cleaning
[2026-01-10 07:57:37] 2026-01-10 06:57:37,110 [wrapper] apfmon messages muted
[2026-01-10 07:57:37] 2026-01-10 06:57:37,112 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:57:37] 2026-01-10 06:57:37,115 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:57:37]  *** Error codes and diagnostics ***
[2026-01-10 07:57:37]     "exeErrorCode": 0,
[2026-01-10 07:57:37]     "exeErrorDiag": "",
[2026-01-10 07:57:37]     "pilotErrorCode": 0,
[2026-01-10 07:57:37]     "pilotErrorDiag": "",
[2026-01-10 07:57:37]  *** Listing of results directory ***
[2026-01-10 07:57:37] total 433668
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 07:57:37] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc       100 Jan 10 06:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:57:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 06:03 run_atlas
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc       105 Jan 10 06:03 job.xml
[2026-01-10 07:57:37] -rw-r--r-- 2 boinc boinc 222853729 Jan 10 06:03 EVNT.47898824._001339.pool.root.1
[2026-01-10 07:57:37] -rw-r--r-- 2 boinc boinc    592402 Jan 10 06:03 input.tar.gz
[2026-01-10 07:57:37] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:03 start_atlas.sh
[2026-01-10 07:57:37] drwxrwx--x 2 boinc boinc      4096 Jan 10 06:03 shared
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:03 boinc_setup_complete
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc      6448 Jan 10 06:03 init_data.xml
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:03 boinc_lockfile
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc      2518 Jan 10 06:03 pandaJob.out
[2026-01-10 07:57:37] -rw------- 1 boinc boinc    989374 Jan 10 06:03 agis_schedconf.cvmfs.json
[2026-01-10 07:57:37] -rw------- 1 boinc boinc   1516240 Jan 10 06:03 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:57:37] drwx------ 5 boinc boinc      4096 Jan 10 06:03 pilot3
[2026-01-10 07:57:37] -rw------- 1 boinc boinc 214815776 Jan 10 07:56 HITS.47898826._036001.pool.root.1
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc       530 Jan 10 07:56 boinc_task_state.xml
[2026-01-10 07:57:37] -rw------- 1 boinc boinc      1015 Jan 10 07:56 memory_monitor_summary.json
[2026-01-10 07:57:37] -rw------- 1 boinc boinc    269687 Jan 10 07:56 log.47898826._036001.job.log.tgz.1
[2026-01-10 07:57:37] -rw------- 1 boinc boinc      7746 Jan 10 07:56 heartbeat.json
[2026-01-10 07:57:37] -rw------- 1 boinc boinc        95 Jan 10 07:57 pilot_heartbeat.json
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc      8192 Jan 10 07:57 boinc_mmap_file
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc        27 Jan 10 07:57 wrapper_checkpoint.txt
[2026-01-10 07:57:37] -rw------- 1 boinc boinc      5010 Jan 10 07:57 pilotlog.txt
[2026-01-10 07:57:37] -rw------- 1 boinc boinc    983350 Jan 10 07:57 log.47898826._036001.job.log.1
[2026-01-10 07:57:37] -rw------- 1 boinc boinc       357 Jan 10 07:57 output.list
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc       620 Jan 10 07:57 runtime_log
[2026-01-10 07:57:37] -rw------- 1 boinc boinc   1269760 Jan 10 07:57 result.tar.gz
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc      8912 Jan 10 07:57 runtime_log.err
[2026-01-10 07:57:37] -rw------- 1 boinc boinc       662 Jan 10 07:57 ZtBODmzzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCslKDm5h8TSm.diag
[2026-01-10 07:57:37] -rw-r--r-- 1 boinc boinc     10189 Jan 10 07:57 stderr.txt
[2026-01-10 07:57:37] HITS file was successfully produced:
[2026-01-10 07:57:37] -rw------- 1 boinc boinc 214815776 Jan 10 07:56 shared/HITS.pool.root.1
[2026-01-10 07:57:37]  *** Contents of shared directory: ***
[2026-01-10 07:57:37] total 429260
[2026-01-10 07:57:37] -rw-r--r-- 2 boinc boinc 222853729 Jan 10 06:03 ATLAS.root_0
[2026-01-10 07:57:37] -rw-r--r-- 2 boinc boinc    592402 Jan 10 06:03 input.tar.gz
[2026-01-10 07:57:37] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:03 start_atlas.sh
[2026-01-10 07:57:37] -rw------- 1 boinc boinc 214815776 Jan 10 07:56 HITS.pool.root.1
[2026-01-10 07:57:37] -rw------- 1 boinc boinc   1269760 Jan 10 07:57 result.tar.gz
07:57:38 (3166105): run_atlas exited; CPU time 19626.395904
07:57:38 (3166105): called boinc_finish(0)

</stderr_txt>
]]>

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