Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:55:28 (916917): wrapper (7.7.26015): starting
09:55:28 (916917): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 09:55:28] Arguments: --nthreads 9
[2026-01-09 09:55:28] Threads: 9
[2026-01-09 09:55:28] Checking for CVMFS
[2026-01-09 09:55:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:55:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:55:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:55:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:55:28] 2.13.3.0 12275 93555 380416 154946 1 606 31526159 40960000 15201 16776704 25 435544339 99.627 430705545 37156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 09:55:28] CVMFS is ok
[2026-01-09 09:55:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:55:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:55:28] Further information can be found at the LHC@home message board.
[2026-01-09 09:55:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:55:28] Checking for apptainer binary...
[2026-01-09 09:55:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:55:28] Running /usr/bin/apptainer --version
[2026-01-09 09:55:28] apptainer version 1.4.5-2.el9
[2026-01-09 09:55:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:55:29] c7-11-11.aglt2.org
[2026-01-09 09:55:29] apptainer works
[2026-01-09 09:55:29] Set ATHENA_PROC_NUMBER=9
[2026-01-09 09:55:29] Set ATHENA_CORE_NUMBER=9
[2026-01-09 09:55:29] Starting ATLAS job with PandaID=6963167662
[2026-01-09 09:55:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:28:55 (1116643): wrapper (7.7.26015): starting
10:28:55 (1116643): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 10:28:55] Arguments: --nthreads 9
[2026-01-09 10:28:55] Threads: 9
[2026-01-09 10:28:55] This job has been restarted, cleaning up previous attempt
[2026-01-09 10:28:55] Checking for CVMFS
[2026-01-09 10:28:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:28:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:28:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:28:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:28:55] 2.13.3.0 12275 93588 361216 154948 3 140 31602799 40960000 13738 16776704 25 435713751 99.627 430708223 37156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 10:28:55] CVMFS is ok
[2026-01-09 10:28:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 10:28:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 10:28:55] Further information can be found at the LHC@home message board.
[2026-01-09 10:28:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:28:55] Checking for apptainer binary...
[2026-01-09 10:28:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:28:55] Running /usr/bin/apptainer --version
[2026-01-09 10:28:55] apptainer version 1.4.5-2.el9
[2026-01-09 10:28:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:28:55] c7-11-11.aglt2.org
[2026-01-09 10:28:55] apptainer works
[2026-01-09 10:28:55] Set ATHENA_PROC_NUMBER=9
[2026-01-09 10:28:55] Set ATHENA_CORE_NUMBER=9
[2026-01-09 10:28:55] Starting ATLAS job with PandaID=6963167662
[2026-01-09 10:28:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:50:58]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:50:58] 2026-01-09 19:50:20,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:50:58] 2026-01-09 19:50:21,555 | INFO     | time since job start (15673s) is within the limit (349056.0s)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,337 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 14:50:58] 2026-01-09 19:50:22,360 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.7581562499995
[2026-01-09 14:50:58] 2026-01-09 19:50:22,371 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963167662/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,371 | INFO     | extracted standard info from prmon json
[2026-01-09 14:50:58] 2026-01-09 19:50:22,371 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:50:58] 2026-01-09 19:50:22,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:50:58] 2026-01-09 19:50:22,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:50:58] 2026-01-09 19:50:22,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:50:58] 2026-01-09 19:50:22,375 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:50:58] 2026-01-09 19:50:22,375 | INFO     | sum of square deviations: 5263623557.556455
[2026-01-09 14:50:58] 2026-01-09 19:50:22,377 | INFO     | sum of deviations: -10307313775.01556
[2026-01-09 14:50:58] 2026-01-09 19:50:22,377 | INFO     | mean x: 1767980386.2451363
[2026-01-09 14:50:58] 2026-01-09 19:50:22,377 | INFO     | mean y: 2575408.587548638
[2026-01-09 14:50:58] 2026-01-09 19:50:22,377 | INFO     | intersect: 3464663529.030872
[2026-01-09 14:50:58] 2026-01-09 19:50:22,377 | INFO     | chi2: 1.9473811073088978
[2026-01-09 14:50:58] 2026-01-09 19:50:22,378 | INFO     | sum of square deviations: 4962356451.74603
[2026-01-09 14:50:58] 2026-01-09 19:50:22,379 | INFO     | sum of deviations: 6408929150.460323
[2026-01-09 14:50:58] 2026-01-09 19:50:22,379 | INFO     | mean x: 1767980233.7460318
[2026-01-09 14:50:58] 2026-01-09 19:50:22,380 | INFO     | mean y: 2583738.7103174604
[2026-01-09 14:50:58] 2026-01-09 19:50:22,380 | INFO     | intersect: -2280779048.2385683
[2026-01-09 14:50:58] 2026-01-09 19:50:22,380 | INFO     | chi2: 1.2638208624202765
[2026-01-09 14:50:58] 2026-01-09 19:50:22,380 | INFO     | current chi2=1.2638208624202765 (change=35.101513634033296 %)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,380 | INFO     | sum of square deviations: 4672810129.935202
[2026-01-09 14:50:58] 2026-01-09 19:50:22,382 | INFO     | sum of deviations: 6325602445.0890665
[2026-01-09 14:50:58] 2026-01-09 19:50:22,382 | INFO     | mean x: 1767980081.2469635
[2026-01-09 14:50:58] 2026-01-09 19:50:22,382 | INFO     | mean y: 2583694.7854251014
[2026-01-09 14:50:58] 2026-01-09 19:50:22,382 | INFO     | intersect: -2390738270.761598
[2026-01-09 14:50:58] 2026-01-09 19:50:22,382 | INFO     | chi2: 1.2640670170754391
[2026-01-09 14:50:58] 2026-01-09 19:50:22,383 | INFO     | current chi2=1.2640670170754391 (change=-0.019477021030595034 %)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,383 | INFO     | right removable region: 246
[2026-01-09 14:50:58] 2026-01-09 19:50:22,383 | INFO     | sum of square deviations: 4962333577.25
[2026-01-09 14:50:58] 2026-01-09 19:50:22,384 | INFO     | sum of deviations: -42613245074.24998
[2026-01-09 14:50:58] 2026-01-09 19:50:22,384 | INFO     | mean x: 1767980538.75
[2026-01-09 14:50:58] 2026-01-09 19:50:22,384 | INFO     | mean y: 2591604.2182539683
[2026-01-09 14:50:58] 2026-01-09 19:50:22,385 | INFO     | intersect: 15184841408.958195
[2026-01-09 14:50:58] 2026-01-09 19:50:22,385 | INFO     | chi2: 0.8091011761538448
[2026-01-09 14:50:58] 2026-01-09 19:50:22,385 | INFO     | current chi2=0.8091011761538448 (change=58.45183189273369 %)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,385 | INFO     | sum of square deviations: 4672780362.437217
[2026-01-09 14:50:58] 2026-01-09 19:50:22,387 | INFO     | sum of deviations: -44623412984.02428
[2026-01-09 14:50:58] 2026-01-09 19:50:22,387 | INFO     | mean x: 1767980691.251012
[2026-01-09 14:50:58] 2026-01-09 19:50:22,387 | INFO     | mean y: 2592633.097165992
[2026-01-09 14:50:58] 2026-01-09 19:50:22,387 | INFO     | intersect: 16886187926.312626
[2026-01-09 14:50:58] 2026-01-09 19:50:22,387 | INFO     | chi2: 0.7850815248397791
[2026-01-09 14:50:58] 2026-01-09 19:50:22,387 | INFO     | current chi2=0.7850815248397791 (change=2.9686832774419956 %)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,387 | INFO     | left removable region: 20
[2026-01-09 14:50:58] 2026-01-09 19:50:22,388 | INFO     | sum of square deviations: 3579379241.097346
[2026-01-09 14:50:58] 2026-01-09 19:50:22,389 | INFO     | sum of deviations: -20196712223.283173
[2026-01-09 14:50:58] 2026-01-09 19:50:22,389 | INFO     | mean x: 1767980660.761062
[2026-01-09 14:50:58] 2026-01-09 19:50:22,389 | INFO     | mean y: 2597744.0132743362
[2026-01-09 14:50:58] 2026-01-09 19:50:22,389 | INFO     | intersect: 9978460656.70487
[2026-01-09 14:50:58] 2026-01-09 19:50:22,389 | INFO     | chi2: 0.08361853452519576
[2026-01-09 14:50:58] 2026-01-09 19:50:22,389 | INFO     | current memory leak: -5.64 B/s (using 226 data points, chi2=0.08)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | could have reported an average CPU frequency of 3291 MHz (12 samples)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | ..............................
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . Timing measurements:
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . get job = 0 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . initial setup = 1 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . payload setup = 5 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . stage-in = 0 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . payload execution = 15623 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . stage-out = 2 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | . log creation = 0 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,390 | INFO     | ..............................
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | 
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | job summary report
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | --------------------------------------------------
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | PanDA job id: 6963167662
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | task id: 47898826
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | errors: (none)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | pilot state: finished 
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | transexitcode: 0
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | exeerrorcode: 0
[2026-01-09 14:50:58] 2026-01-09 19:50:22,461 | INFO     | exeerrordiag: 
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | exitcode: 0
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | exitmsg: OK
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | cpuconsumptiontime: 45269 s
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | nevents: 400
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | neventsw: 0
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | pid: 1148846
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | pgrp: 1148846
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | corecount: 9
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | event service: False
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | sizes: {0: 2283800, 1: 2283999, 8: 2284261, 11: 2284289, 15633: 2315715, 15637: 2324741, 15639: 2324925, 15655: 2325119}
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | --------------------------------------------------
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | 
[2026-01-09 14:50:58] 2026-01-09 19:50:22,462 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,486 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:50:58] 2026-01-09 19:50:22,487 | INFO     | job 6963167662 has completed (purged errors)
[2026-01-09 14:50:58] 2026-01-09 19:50:22,487 | INFO     | overall cleanup function is called
[2026-01-09 14:50:58] 2026-01-09 19:50:23,496 | INFO     | --- collectZombieJob: --- 10, [1148846]
[2026-01-09 14:50:58] 2026-01-09 19:50:23,501 | INFO     | zombie collector waiting for pid 1148846
[2026-01-09 14:50:58] 2026-01-09 19:50:23,501 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:50:58] 2026-01-09 19:50:23,501 | INFO     | collected zombie processes
[2026-01-09 14:50:58] 2026-01-09 19:50:23,501 | INFO     | will attempt to kill all subprocesses of pid=1148846
[2026-01-09 14:50:58] 2026-01-09 19:50:23,920 | INFO     | process IDs to be killed: [1148846] (in reverse order)
[2026-01-09 14:50:58] 2026-01-09 19:50:24,275 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:50:58] 2026-01-09 19:50:24,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:50:58] 2026-01-09 19:50:24,292 | INFO     | did not find any defunct processes belonging to 1148846
[2026-01-09 14:50:58] 2026-01-09 19:50:24,308 | INFO     | did not find any defunct processes belonging to 1148846
[2026-01-09 14:50:58] 2026-01-09 19:50:24,308 | INFO     | ready for new job
[2026-01-09 14:50:58] 2026-01-09 19:50:24,309 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:50:58] 2026-01-09 19:50:24,311 | INFO     | ***************************************
[2026-01-09 14:50:58] 2026-01-09 19:50:24,311 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:50:58] 2026-01-09 19:50:24,311 | INFO     | ***************************************
[2026-01-09 14:50:58] 2026-01-09 19:50:24,311 | INFO     | 
[2026-01-09 14:50:58] 2026-01-09 19:50:24,314 | INFO     | architecture information:
[2026-01-09 14:50:58] 2026-01-09 19:50:24,315 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:50:58] 2026-01-09 19:50:24,332 | INFO     | cat /etc/os-release:
[2026-01-09 14:50:58] NAME="CentOS Linux"
[2026-01-09 14:50:58] VERSION="7 (Core)"
[2026-01-09 14:50:58] ID="centos"
[2026-01-09 14:50:58] ID_LIKE="rhel fedora"
[2026-01-09 14:50:58] VERSION_ID="7"
[2026-01-09 14:50:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:50:58] ANSI_COLOR="0;31"
[2026-01-09 14:50:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:50:58] HOME_URL="https://www.centos.org/"
[2026-01-09 14:50:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:50:58] 
[2026-01-09 14:50:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:50:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:50:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:50:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:50:58] 
[2026-01-09 14:50:58] 2026-01-09 19:50:24,332 | INFO     | ***************************************
[2026-01-09 14:50:58] 2026-01-09 19:50:24,858 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 14:50:58] 2026-01-09 19:50:24,920 | INFO     | sufficient remaining disk space (84671463424 B)
[2026-01-09 14:50:58] 2026-01-09 19:50:24,920 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:50:58] 2026-01-09 19:50:24,920 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:50:58] 2026-01-09 19:50:24,920 | INFO     | update_server=False
[2026-01-09 14:50:58] 2026-01-09 19:50:24,920 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:50:58] 2026-01-09 19:50:24,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:50:58] 2026-01-09 19:50:24,921 | INFO     | aborting loop
[2026-01-09 14:50:58] 2026-01-09 19:50:24,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:50:58] 2026-01-09 19:50:25,453 | INFO     | all data control threads have been joined
[2026-01-09 14:50:58] 2026-01-09 19:50:25,841 | INFO     | all job control threads have been joined
[2026-01-09 14:50:58] 2026-01-09 19:50:25,925 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:25,926 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:50:58] 2026-01-09 19:50:26,108 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,249 | INFO     | all payload control threads have been joined
[2026-01-09 14:50:58] 2026-01-09 19:50:26,327 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,334 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,461 | INFO     | [data] control thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,489 | INFO     | [job] validate thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,501 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,847 | INFO     | [job] control thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,923 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,928 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:26,953 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:27,256 | INFO     | [payload] control thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:27,412 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:27,491 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:50:58] 2026-01-09 19:50:28,497 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:30,071 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:50:58] 2026-01-09 19:50:34,528 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:50:58] 2026-01-09 19:50:34,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139829447612224)>', '<ExcThread(monitor, started 139828800763648)>']
[2026-01-09 14:50:58] 2026-01-09 19:50:39,831 | INFO     | all workflow threads have been joined
[2026-01-09 14:50:58] 2026-01-09 19:50:39,831 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:50:58] 2026-01-09 19:50:39,831 | INFO     | traces error code: 0
[2026-01-09 14:50:58] 2026-01-09 19:50:39,831 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:50:58] 2026-01-09 19:50:56,645 | INFO     | PID=1128237 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:50:58] 2026-01-09 19:50:56,646 | INFO     | .. there are 16 such processes running
[2026-01-09 14:50:58] 2026-01-09 19:50:56,646 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:50:58] 2026-01-09 19:50:56,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:50:58] 2026-01-09 19:50:56,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:50:58] 2026-01-09 19:50:56,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:50:58] 2026-01-09 19:50:56,646 | INFO     | [monitor] control thread has ended
[2026-01-09 14:50:58] 2026-01-09 19:50:56,908 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:50:58] 2026-01-09 19:50:57,006 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:50:58] 2026-01-09 19:50:57,083 [wrapper] pilotpid: 1128237
[2026-01-09 14:50:58] 2026-01-09 19:50:57,138 [wrapper] Pilot exit status: 0
[2026-01-09 14:50:58] 2026-01-09 19:50:57,262 [wrapper] pandaids: 6963167662 6963167662
[2026-01-09 14:50:58] 2026-01-09 19:50:57,673 [wrapper] cleanup supervisor_pilot 2055403 1128238
[2026-01-09 14:50:58] 2026-01-09 19:50:57,704 [wrapper] Test setup, not cleaning
[2026-01-09 14:50:58] 2026-01-09 19:50:57,723 [wrapper] apfmon messages muted
[2026-01-09 14:50:58] 2026-01-09 19:50:57,726 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:50:58] 2026-01-09 19:50:57,728 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:50:58]  *** Error codes and diagnostics ***
[2026-01-09 14:50:58]     "exeErrorCode": 0,
[2026-01-09 14:50:58]     "exeErrorDiag": "",
[2026-01-09 14:50:58]     "pilotErrorCode": 0,
[2026-01-09 14:50:58]     "pilotErrorDiag": "",
[2026-01-09 14:50:58]  *** Listing of results directory ***
[2026-01-09 14:50:58] total 658988
[2026-01-09 14:50:58] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 14:50:58] -rwx------. 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 19:59 queuedata.json
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas       100 Jan  9 09:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:50:58] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 09:55 run_atlas
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas       105 Jan  9 09:55 job.xml
[2026-01-09 14:50:58] -rw-r--r--. 3 boincer umatlas 223873151 Jan  9 09:55 EVNT.47898824._001335.pool.root.1
[2026-01-09 14:50:58] -rw-r--r--. 3 boincer umatlas 223873151 Jan  9 09:55 ATLAS.root_0
[2026-01-09 14:50:58] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:55 start_atlas.sh
[2026-01-09 14:50:58] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 09:55 shared
[2026-01-09 14:50:58] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 09:55 input.tar.gz
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas         0 Jan  9 09:55 boinc_lockfile
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 10:28 pandaJob.out
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas        57 Jan  9 10:28 setup.sh.local
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas    989377 Jan  9 10:29 agis_schedconf.cvmfs.json
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas      6902 Jan  9 14:47 init_data.xml
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas 218070310 Jan  9 14:48 HITS.47898826._035903.pool.root.1
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas       530 Jan  9 14:49 boinc_task_state.xml
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas      1055 Jan  9 14:49 memory_monitor_summary.json
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas   1516240 Jan  9 14:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas    481576 Jan  9 14:50 log.47898826._035903.job.log.tgz.1
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas        96 Jan  9 14:50 pilot_heartbeat.json
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas      7792 Jan  9 14:50 heartbeat.json
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 14:50 boinc_mmap_file
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas        28 Jan  9 14:50 wrapper_checkpoint.txt
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas       823 Jan  9 14:50 pilotlog.txt
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas   2053952 Jan  9 14:50 log.47898826._035903.job.log.1
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas       357 Jan  9 14:50 output.list
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas       620 Jan  9 14:50 runtime_log
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas   2549760 Jan  9 14:50 result.tar.gz
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 14:50 runtime_log.err
[2026-01-09 14:50:58] -rw-------. 1 boincer umatlas       784 Jan  9 14:50 PmoMDmzzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0qlKDm7qctgm.diag
[2026-01-09 14:50:58] -rw-r--r--. 1 boincer umatlas     23366 Jan  9 14:50 stderr.txt
[2026-01-09 14:50:59] HITS file was successfully produced:
[2026-01-09 14:50:59] -rw-------. 1 boincer umatlas 218070310 Jan  9 14:48 shared/HITS.pool.root.1
[2026-01-09 14:50:59]  *** Contents of shared directory: ***
[2026-01-09 14:50:59] total 434684
[2026-01-09 14:50:59] -rw-r--r--. 3 boincer umatlas 223873151 Jan  9 09:55 ATLAS.root_0
[2026-01-09 14:50:59] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:55 start_atlas.sh
[2026-01-09 14:50:59] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 09:55 input.tar.gz
[2026-01-09 14:50:59] -rw-------. 1 boincer umatlas 218070310 Jan  9 14:48 HITS.pool.root.1
[2026-01-09 14:50:59] -rw-------. 1 boincer umatlas   2549760 Jan  9 14:50 result.tar.gz
14:51:00 (1116643): run_atlas exited; CPU time 45617.412397
14:51:00 (1116643): called boinc_finish(0)

</stderr_txt>
]]>

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