Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:54:49 (2109389): wrapper (7.7.26015): starting
13:54:49 (2109389): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 13:54:49] Arguments: --nthreads 8
[2026-01-09 13:54:49] Threads: 8
[2026-01-09 13:54:49] Checking for CVMFS
[2026-01-09 13:54:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:54:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:54:50] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:54:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:54:50] 2.13.3.0 7542 23264 156548 154953 2 26 28829615 40960001 17606 16776704 0 37901298 99.785 24003452 44854 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 13:54:50] CVMFS is ok
[2026-01-09 13:54:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:54:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:54:50] Further information can be found at the LHC@home message board.
[2026-01-09 13:54:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:54:50] Checking for apptainer binary...
[2026-01-09 13:54:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:54:50] Running /usr/bin/apptainer --version
[2026-01-09 13:54:50] apptainer version 1.4.5-2.el9
[2026-01-09 13:54:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:54:51] c-212-6.aglt2.org
[2026-01-09 13:54:51] apptainer works
[2026-01-09 13:54:51] Set ATHENA_PROC_NUMBER=8
[2026-01-09 13:54:51] Set ATHENA_CORE_NUMBER=8
[2026-01-09 13:54:51] Starting ATLAS job with PandaID=6963167632
[2026-01-09 13:54:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:48:18]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:48:18] 2026-01-09 23:47:38,600 | INFO     | .. there are 18 such processes running
[2026-01-09 18:48:18] 2026-01-09 23:47:39,021 | INFO     | monitor loop #1158: job 0:6963167632 is in state 'finished'
[2026-01-09 18:48:18] 2026-01-09 23:47:39,021 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:48:18] 2026-01-09 23:47:39,601 | INFO     | time since job start (17518s) is within the limit (349056.0s)
[2026-01-09 18:48:18] 2026-01-09 23:47:41,526 | INFO     | monitor loop #1159: job 0:6963167632 is in state 'finished'
[2026-01-09 18:48:18] 2026-01-09 23:47:41,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:48:18] 2026-01-09 23:47:41,608 | INFO     | time since job start (17520s) is within the limit (349056.0s)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,195 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 18:48:18] 2026-01-09 23:47:42,204 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3226.363031250002
[2026-01-09 18:48:18] 2026-01-09 23:47:42,253 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963167632/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,254 | INFO     | extracted standard info from prmon json
[2026-01-09 18:48:18] 2026-01-09 23:47:42,254 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 18:48:18] 2026-01-09 23:47:42,254 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 18:48:18] 2026-01-09 23:47:42,254 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 18:48:18] 2026-01-09 23:47:42,254 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 18:48:18] 2026-01-09 23:47:42,279 | INFO     | fitting pss+swap vs Time
[2026-01-09 18:48:18] 2026-01-09 23:47:42,280 | INFO     | sum of square deviations: 7253959614.713272
[2026-01-09 18:48:18] 2026-01-09 23:47:42,281 | INFO     | sum of deviations: 99163483216.97202
[2026-01-09 18:48:18] 2026-01-09 23:47:42,281 | INFO     | mean x: 1767993723.5524476
[2026-01-09 18:48:18] 2026-01-09 23:47:42,282 | INFO     | mean y: 2473375.4685314684
[2026-01-09 18:48:18] 2026-01-09 23:47:42,282 | INFO     | intersect: -24166453010.280983
[2026-01-09 18:48:18] 2026-01-09 23:47:42,330 | INFO     | chi2: 2.7893957340521705
[2026-01-09 18:48:18] 2026-01-09 23:47:42,331 | INFO     | sum of square deviations: 6880124622.199296
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | sum of deviations: 96748316658.32034
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | mean x: 1767993571.0533807
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | mean y: 2472392.978647687
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | intersect: -24859054287.837376
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | chi2: 2.790125843145494
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | current chi2=2.790125843145494 (change=-0.02617445364279567 %)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | right removable region: 280
[2026-01-09 18:48:18] 2026-01-09 23:47:42,333 | INFO     | sum of square deviations: 6880115472.199295
[2026-01-09 18:48:18] 2026-01-09 23:47:42,335 | INFO     | sum of deviations: 24848260321.54449
[2026-01-09 18:48:18] 2026-01-09 23:47:42,335 | INFO     | mean x: 1767993876.0533807
[2026-01-09 18:48:18] 2026-01-09 23:47:42,335 | INFO     | mean y: 2503601.1637010677
[2026-01-09 18:48:18] 2026-01-09 23:47:42,335 | INFO     | intersect: -6382792148.099025
[2026-01-09 18:48:18] 2026-01-09 23:47:42,336 | INFO     | chi2: 0.11983917090708196
[2026-01-09 18:48:18] 2026-01-09 23:47:42,336 | INFO     | current chi2=0.11983917090708196 (change=95.70375872293347 %)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,336 | INFO     | sum of square deviations: 6519358360.289813
[2026-01-09 18:48:18] 2026-01-09 23:47:42,337 | INFO     | sum of deviations: 21492223068.855083
[2026-01-09 18:48:18] 2026-01-09 23:47:42,338 | INFO     | mean x: 1767994028.5507247
[2026-01-09 18:48:18] 2026-01-09 23:47:42,338 | INFO     | mean y: 2504991.724637681
[2026-01-09 18:48:18] 2026-01-09 23:47:42,338 | INFO     | intersect: -5826001426.555265
[2026-01-09 18:48:18] 2026-01-09 23:47:42,338 | INFO     | chi2: 0.09275721485956964
[2026-01-09 18:48:18] 2026-01-09 23:47:42,338 | INFO     | current chi2=0.09275721485956964 (change=22.598584288029226 %)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,338 | INFO     | left removable region: 20
[2026-01-09 18:48:18] 2026-01-09 23:47:42,338 | INFO     | sum of square deviations: 5450013964.246149
[2026-01-09 18:48:18] 2026-01-09 23:47:42,340 | INFO     | sum of deviations: 8937247864.661535
[2026-01-09 18:48:18] 2026-01-09 23:47:42,340 | INFO     | mean x: 1767994150.5538461
[2026-01-09 18:48:18] 2026-01-09 23:47:42,340 | INFO     | mean y: 2509822.2384615387
[2026-01-09 18:48:18] 2026-01-09 23:47:42,340 | INFO     | intersect: -2896749161.3955474
[2026-01-09 18:48:18] 2026-01-09 23:47:42,340 | INFO     | chi2: 0.005705856565942919
[2026-01-09 18:48:18] 2026-01-09 23:47:42,340 | INFO     | current memory leak: 1.64 B/s (using 260 data points, chi2=0.01)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | could have reported an average CPU frequency of 3197 MHz (13 samples)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | ..............................
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . Timing measurements:
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . get job = 0 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . initial setup = 6 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . payload setup = 25 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . stage-in = 0 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . payload execution = 17431 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . stage-out = 2 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | . log creation = 0 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,341 | INFO     | ..............................
[2026-01-09 18:48:18] 2026-01-09 23:47:42,423 | INFO     | 
[2026-01-09 18:48:18] 2026-01-09 23:47:42,434 | INFO     | job summary report
[2026-01-09 18:48:18] 2026-01-09 23:47:42,434 | INFO     | --------------------------------------------------
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | PanDA job id: 6963167632
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | task id: 47898826
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | errors: (none)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | pilot state: finished 
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | transexitcode: 0
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | exeerrorcode: 0
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | exeerrordiag: 
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | exitcode: 0
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | exitmsg: OK
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | cpuconsumptiontime: 47981 s
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | nevents: 400
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | neventsw: 0
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | pid: 2121808
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | pgrp: 2121808
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | corecount: 8
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | event service: False
[2026-01-09 18:48:18] 2026-01-09 23:47:42,435 | INFO     | sizes: {0: 2283743, 1: 2283998, 2: 2283998, 12: 2284026, 22: 2284316, 23: 2284344, 17460: 2316855, 17461: 2316854, 17464: 2325908, 17467: 2325964, 17478: 2326158}
[2026-01-09 18:48:18] 2026-01-09 23:47:42,436 | INFO     | --------------------------------------------------
[2026-01-09 18:48:18] 2026-01-09 23:47:42,436 | INFO     | 
[2026-01-09 18:48:18] 2026-01-09 23:47:42,436 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | job 6963167632 has completed (purged errors)
[2026-01-09 18:48:18] 2026-01-09 23:47:42,558 | INFO     | overall cleanup function is called
[2026-01-09 18:48:18] 2026-01-09 23:47:43,577 | INFO     | --- collectZombieJob: --- 10, [2121808]
[2026-01-09 18:48:18] 2026-01-09 23:47:43,578 | INFO     | zombie collector waiting for pid 2121808
[2026-01-09 18:48:18] 2026-01-09 23:47:43,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:48:18] 2026-01-09 23:47:43,578 | INFO     | collected zombie processes
[2026-01-09 18:48:18] 2026-01-09 23:47:43,578 | INFO     | will attempt to kill all subprocesses of pid=2121808
[2026-01-09 18:48:18] 2026-01-09 23:47:44,853 | INFO     | process IDs to be killed: [2121808] (in reverse order)
[2026-01-09 18:48:18] 2026-01-09 23:47:45,094 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:48:18] 2026-01-09 23:47:45,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:48:18] 2026-01-09 23:47:45,130 | INFO     | did not find any defunct processes belonging to 2121808
[2026-01-09 18:48:18] 2026-01-09 23:47:45,193 | INFO     | did not find any defunct processes belonging to 2121808
[2026-01-09 18:48:18] 2026-01-09 23:47:45,193 | INFO     | ready for new job
[2026-01-09 18:48:18] 2026-01-09 23:47:45,193 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:48:18] 2026-01-09 23:47:45,208 | INFO     | ***************************************
[2026-01-09 18:48:18] 2026-01-09 23:47:45,208 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:48:18] 2026-01-09 23:47:45,208 | INFO     | ***************************************
[2026-01-09 18:48:18] 2026-01-09 23:47:45,208 | INFO     | 
[2026-01-09 18:48:18] 2026-01-09 23:47:45,225 | INFO     | architecture information:
[2026-01-09 18:48:18] 2026-01-09 23:47:45,226 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:48:18] 2026-01-09 23:47:45,442 | INFO     | cat /etc/os-release:
[2026-01-09 18:48:18] NAME="CentOS Linux"
[2026-01-09 18:48:18] VERSION="7 (Core)"
[2026-01-09 18:48:18] ID="centos"
[2026-01-09 18:48:18] ID_LIKE="rhel fedora"
[2026-01-09 18:48:18] VERSION_ID="7"
[2026-01-09 18:48:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:48:18] ANSI_COLOR="0;31"
[2026-01-09 18:48:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:48:18] HOME_URL="https://www.centos.org/"
[2026-01-09 18:48:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:48:18] 
[2026-01-09 18:48:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:48:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:48:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:48:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:48:18] 
[2026-01-09 18:48:18] 2026-01-09 23:47:45,442 | INFO     | ***************************************
[2026-01-09 18:48:18] 2026-01-09 23:47:45,946 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 18:48:18] 2026-01-09 23:47:46,048 | INFO     | sufficient remaining disk space (126968922112 B)
[2026-01-09 18:48:18] 2026-01-09 23:47:46,048 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:48:18] 2026-01-09 23:47:46,048 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:48:18] 2026-01-09 23:47:46,049 | INFO     | update_server=False
[2026-01-09 18:48:18] 2026-01-09 23:47:46,049 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:48:18] 2026-01-09 23:47:46,079 | INFO     | all job control threads have been joined
[2026-01-09 18:48:18] 2026-01-09 23:47:46,541 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 18:48:18] 2026-01-09 23:47:46,541 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 18:48:18] 2026-01-09 23:47:46,542 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:48:18] 2026-01-09 23:47:46,542 | INFO     | will abort loop
[2026-01-09 18:48:18] 2026-01-09 23:47:46,681 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:48:18] 2026-01-09 23:47:47,054 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,085 | INFO     | [job] control thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,146 | INFO     | all data control threads have been joined
[2026-01-09 18:48:18] 2026-01-09 23:47:47,150 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,183 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:48:18] 2026-01-09 23:47:47,295 | INFO     | all payload control threads have been joined
[2026-01-09 18:48:18] 2026-01-09 23:47:47,415 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:48:18] 2026-01-09 23:47:47,500 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,547 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,621 | INFO     | [job] validate thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,627 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:47,957 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:48,152 | INFO     | [data] control thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:48,186 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:48,293 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:48,302 | INFO     | [payload] control thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:48,452 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:49,192 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:47:50,703 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:48:18] 2026-01-09 23:48:11,254 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:48:18] 2026-01-09 23:48:12,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140385754232640)>', '<ExcThread(monitor, started 140385384896256)>']
[2026-01-09 18:48:18] 2026-01-09 23:48:16,263 | INFO     | PID=2113578 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:48:18] 2026-01-09 23:48:16,263 | INFO     | .. there are 18 such processes running
[2026-01-09 18:48:18] 2026-01-09 23:48:16,263 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:48:18] 2026-01-09 23:48:16,263 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:48:18] 2026-01-09 23:48:16,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:48:18] 2026-01-09 23:48:16,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:48:18] 2026-01-09 23:48:16,263 | INFO     | [monitor] control thread has ended
[2026-01-09 18:48:18] 2026-01-09 23:48:17,464 | INFO     | all workflow threads have been joined
[2026-01-09 18:48:18] 2026-01-09 23:48:17,464 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:48:18] 2026-01-09 23:48:17,464 | INFO     | traces error code: 0
[2026-01-09 18:48:18] 2026-01-09 23:48:17,464 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:48:18] 2026-01-09 23:48:17,603 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:48:18] 2026-01-09 23:48:17,619 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:48:18] 2026-01-09 23:48:17,647 [wrapper] pilotpid: 2113578
[2026-01-09 18:48:18] 2026-01-09 23:48:17,657 [wrapper] Pilot exit status: 0
[2026-01-09 18:48:18] 2026-01-09 23:48:17,740 [wrapper] pandaids: 6963167632
[2026-01-09 18:48:18] 2026-01-09 23:48:17,848 [wrapper] cleanup supervisor_pilot 2663328 2113579
[2026-01-09 18:48:18] 2026-01-09 23:48:17,851 [wrapper] Test setup, not cleaning
[2026-01-09 18:48:18] 2026-01-09 23:48:17,860 [wrapper] apfmon messages muted
[2026-01-09 18:48:18] 2026-01-09 23:48:17,866 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:48:18] 2026-01-09 23:48:17,870 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:48:18]  *** Error codes and diagnostics ***
[2026-01-09 18:48:18]     "exeErrorCode": 0,
[2026-01-09 18:48:18]     "exeErrorDiag": "",
[2026-01-09 18:48:18]     "pilotErrorCode": 0,
[2026-01-09 18:48:18]     "pilotErrorDiag": "",
[2026-01-09 18:48:18]  *** Listing of results directory ***
[2026-01-09 18:48:18] total 446060
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 18:48:18] -rwx------. 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 19:59 queuedata.json
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas       100 Jan  9 13:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:48:18] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 13:54 run_atlas
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas       105 Jan  9 13:54 job.xml
[2026-01-09 18:48:18] -rw-r--r--. 2 boincer umatlas 224489145 Jan  9 13:54 EVNT.47898824._001333.pool.root.1
[2026-01-09 18:48:18] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:54 start_atlas.sh
[2026-01-09 18:48:18] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 13:54 shared
[2026-01-09 18:48:18] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 13:54 input.tar.gz
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas         0 Jan  9 13:54 boinc_lockfile
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 13:54 pandaJob.out
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas        57 Jan  9 13:54 setup.sh.local
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas    989372 Jan  9 13:55 agis_schedconf.cvmfs.json
[2026-01-09 18:48:18] drwx------. 5 boincer umatlas      4096 Jan  9 13:55 pilot3
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas      6956 Jan  9 18:45 init_data.xml
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas 222661585 Jan  9 18:46 HITS.47898826._035873.pool.root.1
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas       531 Jan  9 18:46 boinc_task_state.xml
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas      1032 Jan  9 18:47 memory_monitor_summary.json
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas   1516240 Jan  9 18:47 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas    522335 Jan  9 18:47 log.47898826._035873.job.log.tgz.1
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas        95 Jan  9 18:47 pilot_heartbeat.json
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas      7773 Jan  9 18:47 heartbeat.json
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas        28 Jan  9 18:48 wrapper_checkpoint.txt
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 18:48 boinc_mmap_file
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas      5011 Jan  9 18:48 pilotlog.txt
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas   2329696 Jan  9 18:48 log.47898826._035873.job.log.1
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas       357 Jan  9 18:48 output.list
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas       620 Jan  9 18:48 runtime_log
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas   2867200 Jan  9 18:48 result.tar.gz
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 18:48 runtime_log.err
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas       655 Jan  9 18:48 PXyMDmpzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOcgKDmJOpggm.diag
[2026-01-09 18:48:18] -rw-r--r--. 1 boincer umatlas     21411 Jan  9 18:48 stderr.txt
[2026-01-09 18:48:18] HITS file was successfully produced:
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas 222661585 Jan  9 18:46 shared/HITS.pool.root.1
[2026-01-09 18:48:18]  *** Contents of shared directory: ***
[2026-01-09 18:48:18] total 440076
[2026-01-09 18:48:18] -rw-r--r--. 2 boincer umatlas 224489145 Jan  9 13:54 ATLAS.root_0
[2026-01-09 18:48:18] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 13:54 start_atlas.sh
[2026-01-09 18:48:18] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 13:54 input.tar.gz
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas 222661585 Jan  9 18:46 HITS.pool.root.1
[2026-01-09 18:48:18] -rw-------. 1 boincer umatlas   2867200 Jan  9 18:48 result.tar.gz
18:48:20 (2109389): run_atlas exited; CPU time 48478.698885
18:48:20 (2109389): called boinc_finish(0)

</stderr_txt>
]]>

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