Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:45:56 (3622125): wrapper (7.7.26015): starting
09:45:56 (3622125): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 09:45:56] Arguments: --nthreads 8
[2026-01-09 09:45:56] Threads: 8
[2026-01-09 09:45:56] Checking for CVMFS
[2026-01-09 09:45:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:45:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:45:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:45:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:45:58] 2.13.3.0 12388 93501 214160 154946 2 312 32190736 32935937 18567 16776704 0 413976628 99.472 552463423 38101 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 09:45:58] CVMFS is ok
[2026-01-09 09:45:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:45:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:45:58] Further information can be found at the LHC@home message board.
[2026-01-09 09:45:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:45:58] Checking for apptainer binary...
[2026-01-09 09:45:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:45:58] Running /usr/bin/apptainer --version
[2026-01-09 09:45:58] apptainer version 1.4.5-2.el9
[2026-01-09 09:45:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:45:59] c7-4-31.aglt2.org
[2026-01-09 09:45:59] apptainer works
[2026-01-09 09:45:59] Set ATHENA_PROC_NUMBER=8
[2026-01-09 09:45:59] Set ATHENA_CORE_NUMBER=8
[2026-01-09 09:45:59] Starting ATLAS job with PandaID=6963167517
[2026-01-09 09:45:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:02:20]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:02:20] 2026-01-10 01:01:38,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:02:20] 2026-01-10 01:01:40,298 | INFO     | time since job start (36879s) is within the limit (349056.0s)
[2026-01-09 20:02:20] 2026-01-10 01:01:41,293 | INFO     | monitor loop #2356: job 0:6963167517 is in state 'finished'
[2026-01-09 20:02:20] 2026-01-10 01:01:41,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:02:20] 2026-01-10 01:01:42,307 | INFO     | time since job start (36881s) is within the limit (349056.0s)
[2026-01-09 20:02:20] 2026-01-10 01:01:43,801 | INFO     | monitor loop #2357: job 0:6963167517 is in state 'finished'
[2026-01-09 20:02:20] 2026-01-10 01:01:43,801 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:02:20] 2026-01-10 01:01:44,315 | INFO     | time since job start (36883s) is within the limit (349056.0s)
[2026-01-09 20:02:20] 2026-01-10 01:01:44,838 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 20:02:20] 2026-01-10 01:01:44,844 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3262.5043958333335
[2026-01-09 20:02:20] 2026-01-10 01:01:44,885 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963167517/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:02:20] 2026-01-10 01:01:44,886 | INFO     | extracted standard info from prmon json
[2026-01-09 20:02:20] 2026-01-10 01:01:44,886 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:02:20] 2026-01-10 01:01:44,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:02:20] 2026-01-10 01:01:44,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:02:20] 2026-01-10 01:01:44,886 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:02:20] 2026-01-10 01:01:44,903 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:02:20] 2026-01-10 01:01:44,904 | INFO     | sum of square deviations: 67987354288.132645
[2026-01-09 20:02:20] 2026-01-10 01:01:44,920 | INFO     | sum of deviations: 314330874842.24695
[2026-01-09 20:02:20] 2026-01-10 01:01:44,920 | INFO     | mean x: 1767988509.3150911
[2026-01-09 20:02:20] 2026-01-10 01:01:44,920 | INFO     | mean y: 2467726.96185738
[2026-01-09 20:02:20] 2026-01-10 01:01:44,920 | INFO     | intersect: -8171602005.018538
[2026-01-09 20:02:20] 2026-01-10 01:01:44,924 | INFO     | chi2: 5.534500960189093
[2026-01-09 20:02:20] 2026-01-10 01:01:44,925 | INFO     | sum of square deviations: 66310162185.13195
[2026-01-09 20:02:20] 2026-01-10 01:01:44,943 | INFO     | sum of deviations: 386830237547.51807
[2026-01-09 20:02:20] 2026-01-10 01:01:44,944 | INFO     | mean x: 1767988356.8177257
[2026-01-09 20:02:20] 2026-01-10 01:01:44,944 | INFO     | mean y: 2474284.2341137123
[2026-01-09 20:02:20] 2026-01-10 01:01:44,944 | INFO     | intersect: -10311349924.785744
[2026-01-09 20:02:20] 2026-01-10 01:01:44,944 | INFO     | chi2: 4.168699989985822
[2026-01-09 20:02:20] 2026-01-10 01:01:44,945 | INFO     | current chi2=4.168699989985822 (change=24.677942600927953 %)
[2026-01-09 20:02:20] 2026-01-10 01:01:44,945 | INFO     | right removable region: 597
[2026-01-09 20:02:20] 2026-01-10 01:01:44,945 | INFO     | sum of square deviations: 66310046285.13194
[2026-01-09 20:02:20] 2026-01-10 01:01:44,961 | INFO     | sum of deviations: 122519768882.80258
[2026-01-09 20:02:20] 2026-01-10 01:01:44,961 | INFO     | mean x: 1767988661.8177257
[2026-01-09 20:02:20] 2026-01-10 01:01:44,961 | INFO     | mean y: 2485155.943143813
[2026-01-09 20:02:20] 2026-01-10 01:01:44,961 | INFO     | intersect: -3264192736.3009505
[2026-01-09 20:02:20] 2026-01-10 01:01:44,962 | INFO     | chi2: 1.8458806914216965
[2026-01-09 20:02:20] 2026-01-10 01:01:44,962 | INFO     | current chi2=1.8458806914216965 (change=66.6477482848132 %)
[2026-01-09 20:02:20] 2026-01-10 01:01:44,963 | INFO     | sum of square deviations: 64660589112.76205
[2026-01-09 20:02:20] 2026-01-10 01:01:44,978 | INFO     | sum of deviations: 67553367029.73865
[2026-01-09 20:02:20] 2026-01-10 01:01:44,978 | INFO     | mean x: 1767988814.3187184
[2026-01-09 20:02:20] 2026-01-10 01:01:44,979 | INFO     | mean y: 2490223.3929173695
[2026-01-09 20:02:20] 2026-01-10 01:01:44,979 | INFO     | intersect: -1844594668.9185917
[2026-01-09 20:02:20] 2026-01-10 01:01:44,979 | INFO     | chi2: 1.4463851305124216
[2026-01-09 20:02:20] 2026-01-10 01:01:44,979 | INFO     | current chi2=1.4463851305124216 (change=21.642545087872588 %)
[2026-01-09 20:02:20] 2026-01-10 01:01:44,979 | INFO     | left removable region: 20
[2026-01-09 20:02:20] 2026-01-10 01:01:44,980 | INFO     | sum of square deviations: 59566589764.74513
[2026-01-09 20:02:20] 2026-01-10 01:01:44,995 | INFO     | sum of deviations: 119914339370.88232
[2026-01-09 20:02:20] 2026-01-10 01:01:44,995 | INFO     | mean x: 1767988936.3258233
[2026-01-09 20:02:20] 2026-01-10 01:01:44,995 | INFO     | mean y: 2499026.5112651647
[2026-01-09 20:02:20] 2026-01-10 01:01:44,995 | INFO     | intersect: -3556664359.404406
[2026-01-09 20:02:20] 2026-01-10 01:01:45,000 | INFO     | chi2: 0.025072330660164593
[2026-01-09 20:02:20] 2026-01-10 01:01:45,000 | INFO     | current memory leak: 2.01 B/s (using 577 data points, chi2=0.03)
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | could have reported an average CPU frequency of 3187 MHz (24 samples)
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | ..............................
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . Timing measurements:
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . get job = 0 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . initial setup = 3 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . payload setup = 42 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . stage-in = 0 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . payload execution = 36755 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . stage-out = 5 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | . log creation = 0 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,001 | INFO     | ..............................
[2026-01-09 20:02:20] 2026-01-10 01:01:45,197 | INFO     | 
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | job summary report
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | --------------------------------------------------
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | PanDA job id: 6963167517
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | task id: 47898826
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | errors: (none)
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | pilot state: finished 
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | transexitcode: 0
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | exeerrorcode: 0
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | exeerrordiag: 
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | exitcode: 0
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | exitmsg: OK
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | cpuconsumptiontime: 46362 s
[2026-01-09 20:02:20] 2026-01-10 01:01:45,198 | INFO     | nevents: 400
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | neventsw: 0
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | pid: 3644154
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | pgrp: 3644154
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | corecount: 8
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | event service: False
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | sizes: {0: 2283143, 1: 2283999, 12: 2283999, 23: 2284027, 27: 2284317, 34: 2284345, 36802: 2326151, 36810: 2335205, 36827: 2335343}
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | --------------------------------------------------
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | 
[2026-01-09 20:02:20] 2026-01-10 01:01:45,199 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,301 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | job 6963167517 has completed (purged errors)
[2026-01-09 20:02:20] 2026-01-10 01:01:45,302 | INFO     | overall cleanup function is called
[2026-01-09 20:02:20] 2026-01-10 01:01:46,324 | INFO     | --- collectZombieJob: --- 10, [3644154]
[2026-01-09 20:02:20] 2026-01-10 01:01:46,325 | INFO     | zombie collector waiting for pid 3644154
[2026-01-09 20:02:20] 2026-01-10 01:01:46,325 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:02:20] 2026-01-10 01:01:46,325 | INFO     | collected zombie processes
[2026-01-09 20:02:20] 2026-01-10 01:01:46,325 | INFO     | will attempt to kill all subprocesses of pid=3644154
[2026-01-09 20:02:20] 2026-01-10 01:01:48,001 | INFO     | process IDs to be killed: [3644154] (in reverse order)
[2026-01-09 20:02:20] 2026-01-10 01:01:48,320 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:02:20] 2026-01-10 01:01:48,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:02:20] 2026-01-10 01:01:48,344 | INFO     | did not find any defunct processes belonging to 3644154
[2026-01-09 20:02:20] 2026-01-10 01:01:48,364 | INFO     | did not find any defunct processes belonging to 3644154
[2026-01-09 20:02:20] 2026-01-10 01:01:48,365 | INFO     | ready for new job
[2026-01-09 20:02:20] 2026-01-10 01:01:48,365 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:02:20] 2026-01-10 01:01:48,374 | INFO     | ***************************************
[2026-01-09 20:02:20] 2026-01-10 01:01:48,374 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:02:20] 2026-01-10 01:01:48,374 | INFO     | ***************************************
[2026-01-09 20:02:20] 2026-01-10 01:01:48,374 | INFO     | 
[2026-01-09 20:02:20] 2026-01-10 01:01:48,416 | INFO     | architecture information:
[2026-01-09 20:02:20] 2026-01-10 01:01:48,419 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:02:20] 2026-01-10 01:01:48,494 | INFO     | cat /etc/os-release:
[2026-01-09 20:02:20] NAME="CentOS Linux"
[2026-01-09 20:02:20] VERSION="7 (Core)"
[2026-01-09 20:02:20] ID="centos"
[2026-01-09 20:02:20] ID_LIKE="rhel fedora"
[2026-01-09 20:02:20] VERSION_ID="7"
[2026-01-09 20:02:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:02:20] ANSI_COLOR="0;31"
[2026-01-09 20:02:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:02:20] HOME_URL="https://www.centos.org/"
[2026-01-09 20:02:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:02:20] 
[2026-01-09 20:02:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:02:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:02:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:02:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:02:20] 
[2026-01-09 20:02:20] 2026-01-10 01:01:48,495 | INFO     | ***************************************
[2026-01-09 20:02:20] 2026-01-10 01:01:49,000 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 20:02:20] 2026-01-10 01:01:49,027 | INFO     | sufficient remaining disk space (73653026816 B)
[2026-01-09 20:02:20] 2026-01-10 01:01:49,028 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:02:20] 2026-01-10 01:01:49,028 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:02:20] 2026-01-10 01:01:49,028 | INFO     | update_server=False
[2026-01-09 20:02:20] 2026-01-10 01:01:49,028 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:02:20] 2026-01-10 01:01:49,029 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:02:20] 2026-01-10 01:01:49,276 | INFO     | all data control threads have been joined
[2026-01-09 20:02:20] 2026-01-10 01:01:49,660 | INFO     | all payload control threads have been joined
[2026-01-09 20:02:20] 2026-01-10 01:01:49,854 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:02:20] 2026-01-10 01:01:49,854 | INFO     | aborting loop
[2026-01-09 20:02:20] 2026-01-10 01:01:50,035 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:50,220 | INFO     | all job control threads have been joined
[2026-01-09 20:02:20] 2026-01-10 01:01:50,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:02:20] 2026-01-10 01:01:50,282 | INFO     | [data] control thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:50,334 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:50,643 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:50,643 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:50,668 | INFO     | [payload] control thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:50,782 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:50,860 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:51,035 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:51,226 | INFO     | [job] control thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:51,227 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:51,380 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:51,381 | INFO     | [job] validate thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:51,383 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:51,538 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:52,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:02:20] 2026-01-10 01:01:56,331 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:02:20] 2026-01-10 01:01:59,688 [wrapper] supervise_pilot (15 min periods counter: 42)
[2026-01-09 20:02:20] 2026-01-10 01:02:04,917 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:02:20] 2026-01-10 01:02:06,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140269683042112)>', '<ExcThread(monitor, started 140268523218688)>']
[2026-01-09 20:02:20] 2026-01-10 01:02:11,996 | INFO     | all workflow threads have been joined
[2026-01-09 20:02:20] 2026-01-10 01:02:11,997 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:02:20] 2026-01-10 01:02:11,997 | INFO     | traces error code: 0
[2026-01-09 20:02:20] 2026-01-10 01:02:11,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:02:20] 2026-01-10 01:02:18,622 | INFO     | PID=3635778 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:02:20] 2026-01-10 01:02:18,622 | INFO     | .. there are 17 such processes running
[2026-01-09 20:02:20] 2026-01-10 01:02:18,623 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:02:20] 2026-01-10 01:02:18,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:02:20] 2026-01-10 01:02:18,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:02:20] 2026-01-10 01:02:18,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:02:20] 2026-01-10 01:02:18,624 | INFO     | [monitor] control thread has ended
[2026-01-09 20:02:20] 2026-01-10 01:02:19,886 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:02:20] 2026-01-10 01:02:19,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:02:20] 2026-01-10 01:02:19,934 [wrapper] pilotpid: 3635778
[2026-01-09 20:02:20] 2026-01-10 01:02:19,959 [wrapper] Pilot exit status: 0
[2026-01-09 20:02:20] 2026-01-10 01:02:20,016 [wrapper] pandaids: 6963167517
[2026-01-09 20:02:20] 2026-01-10 01:02:20,168 [wrapper] cleanup supervisor_pilot 1156008 3635779
[2026-01-09 20:02:20] 2026-01-10 01:02:20,185 [wrapper] Test setup, not cleaning
[2026-01-09 20:02:20] 2026-01-10 01:02:20,210 [wrapper] apfmon messages muted
[2026-01-09 20:02:20] 2026-01-10 01:02:20,227 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:02:20] 2026-01-10 01:02:20,257 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:02:20]  *** Error codes and diagnostics ***
[2026-01-09 20:02:20]     "exeErrorCode": 0,
[2026-01-09 20:02:20]     "exeErrorDiag": "",
[2026-01-09 20:02:20]     "pilotErrorCode": 0,
[2026-01-09 20:02:20]     "pilotErrorDiag": "",
[2026-01-09 20:02:20]  *** Listing of results directory ***
[2026-01-09 20:02:20] total 448140
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 20:02:20] -rwx------. 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 19:57 queuedata.json
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas       100 Jan  9 09:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:02:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 09:45 run_atlas
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas       105 Jan  9 09:45 job.xml
[2026-01-09 20:02:20] -rw-r--r--. 2 boincer umatlas 225409879 Jan  9 09:45 EVNT.47898824._001327.pool.root.1
[2026-01-09 20:02:20] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:45 start_atlas.sh
[2026-01-09 20:02:20] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 09:45 shared
[2026-01-09 20:02:20] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 09:45 input.tar.gz
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas         0 Jan  9 09:45 boinc_lockfile
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 09:45 pandaJob.out
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas        57 Jan  9 09:46 setup.sh.local
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas    989377 Jan  9 09:46 agis_schedconf.cvmfs.json
[2026-01-09 20:02:20] drwx------. 5 boincer umatlas      4096 Jan  9 09:47 pilot3
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas 218486000 Jan  9 19:59 HITS.47898826._035758.pool.root.1
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas       530 Jan  9 19:59 boinc_task_state.xml
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas      6944 Jan  9 20:00 init_data.xml
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas      1040 Jan  9 20:01 memory_monitor_summary.json
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:01 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas    754232 Jan  9 20:01 log.47898826._035758.job.log.tgz.1
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas      7784 Jan  9 20:01 heartbeat.json
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas        95 Jan  9 20:02 pilot_heartbeat.json
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas       823 Jan  9 20:02 pilotlog.txt
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:02 boinc_mmap_file
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas   4790476 Jan  9 20:02 log.47898826._035758.job.log.1
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas        28 Jan  9 20:02 wrapper_checkpoint.txt
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas       357 Jan  9 20:02 output.list
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:02 runtime_log
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas   5560320 Jan  9 20:02 result.tar.gz
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 20:02 runtime_log.err
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas       660 Jan  9 20:02 2lhKDmpzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzagKDm6RJFGm.diag
[2026-01-09 20:02:20] -rw-r--r--. 1 boincer umatlas     21412 Jan  9 20:02 stderr.txt
[2026-01-09 20:02:20] HITS file was successfully produced:
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas 218486000 Jan  9 19:59 shared/HITS.pool.root.1
[2026-01-09 20:02:20]  *** Contents of shared directory: ***
[2026-01-09 20:02:20] total 439528
[2026-01-09 20:02:20] -rw-r--r--. 2 boincer umatlas 225409879 Jan  9 09:45 ATLAS.root_0
[2026-01-09 20:02:20] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:45 start_atlas.sh
[2026-01-09 20:02:20] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 09:45 input.tar.gz
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas 218486000 Jan  9 19:59 HITS.pool.root.1
[2026-01-09 20:02:20] -rw-------. 1 boincer umatlas   5560320 Jan  9 20:02 result.tar.gz
20:02:22 (3622125): run_atlas exited; CPU time 47618.201409
20:02:22 (3622125): called boinc_finish(0)

</stderr_txt>
]]>

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