Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:30:27 (3823291): wrapper (7.7.26015): starting
05:30:27 (3823291): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 05:30:27] Arguments: --nthreads 3
[2026-01-10 05:30:27] Threads: 3
[2026-01-10 05:30:27] Checking for CVMFS
[2026-01-10 05:30:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 05:30:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 05:30:28] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 05:30:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 05:30:28] 2.9.2.0 2993219 3337 82172 154968 1 56 22130489 36864001 0 130560 0 2146532 99.988 125056 5888 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 05:30:28] CVMFS is ok
[2026-01-10 05:30:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 05:30:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 05:30:28] Further information can be found at the LHC@home message board.
[2026-01-10 05:30:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 05:30:28] Checking for apptainer binary...
[2026-01-10 05:30:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 05:30:28] Running /usr/bin/apptainer --version
[2026-01-10 05:30:28] apptainer version 1.4.1-1.1
[2026-01-10 05:30:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 05:30:28] magicA161
[2026-01-10 05:30:28] apptainer works
[2026-01-10 05:30:28] Set ATHENA_PROC_NUMBER=3
[2026-01-10 05:30:28] Set ATHENA_CORE_NUMBER=3
[2026-01-10 05:30:28] Starting ATLAS job with PandaID=6963167053
[2026-01-10 05:30:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:18:47]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | job 6963167053 has completed (purged errors)
[2026-01-10 07:18:47] 2026-01-10 06:17:52,345 | INFO     | overall cleanup function is called
[2026-01-10 07:18:47] 2026-01-10 06:17:53,352 | INFO     | --- collectZombieJob: --- 10, [3833454]
[2026-01-10 07:18:47] 2026-01-10 06:17:53,352 | INFO     | zombie collector waiting for pid 3833454
[2026-01-10 07:18:47] 2026-01-10 06:17:53,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:18:47] 2026-01-10 06:17:53,352 | INFO     | collected zombie processes
[2026-01-10 07:18:47] 2026-01-10 06:17:53,352 | INFO     | will attempt to kill all subprocesses of pid=3833454
[2026-01-10 07:18:47] 2026-01-10 06:17:53,393 | INFO     | process IDs to be killed: [3833454] (in reverse order)
[2026-01-10 07:18:47] 2026-01-10 06:17:53,416 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:18:47] 2026-01-10 06:17:53,416 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:18:47] 2026-01-10 06:17:53,418 | INFO     | did not find any defunct processes belonging to 3833454
[2026-01-10 07:18:47] 2026-01-10 06:17:53,419 | INFO     | did not find any defunct processes belonging to 3833454
[2026-01-10 07:18:47] 2026-01-10 06:17:53,419 | INFO     | ready for new job
[2026-01-10 07:18:47] 2026-01-10 06:17:53,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:18:47] 2026-01-10 06:17:53,420 | INFO     | ***************************************
[2026-01-10 07:18:47] 2026-01-10 06:17:53,420 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:18:47] 2026-01-10 06:17:53,420 | INFO     | ***************************************
[2026-01-10 07:18:47] 2026-01-10 06:17:53,420 | INFO     | 
[2026-01-10 07:18:47] 2026-01-10 06:17:53,420 | INFO     | architecture information:
[2026-01-10 07:18:47] 2026-01-10 06:17:53,420 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:18:47] 2026-01-10 06:17:53,428 | INFO     | cat /etc/os-release:
[2026-01-10 07:18:47] NAME="CentOS Linux"
[2026-01-10 07:18:47] VERSION="7 (Core)"
[2026-01-10 07:18:47] ID="centos"
[2026-01-10 07:18:47] ID_LIKE="rhel fedora"
[2026-01-10 07:18:47] VERSION_ID="7"
[2026-01-10 07:18:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:18:47] ANSI_COLOR="0;31"
[2026-01-10 07:18:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:18:47] HOME_URL="https://www.centos.org/"
[2026-01-10 07:18:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:18:47] 
[2026-01-10 07:18:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:18:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:18:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:18:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:18:47] 
[2026-01-10 07:18:47] 2026-01-10 06:17:53,428 | INFO     | ***************************************
[2026-01-10 07:18:47] 2026-01-10 06:17:53,932 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 07:18:47] 2026-01-10 06:17:53,944 | INFO     | sufficient remaining disk space (383357288448 B)
[2026-01-10 07:18:47] 2026-01-10 06:17:53,944 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:18:47] 2026-01-10 06:17:53,944 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:18:47] 2026-01-10 06:17:53,944 | INFO     | update_server=False
[2026-01-10 07:18:47] 2026-01-10 06:17:53,944 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:18:47] 2026-01-10 06:17:53,944 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:18:47] 2026-01-10 06:17:54,042 | INFO     | all payload control threads have been joined
[2026-01-10 07:18:47] 2026-01-10 06:17:54,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:18:47] 2026-01-10 06:17:54,071 | INFO     | aborting loop
[2026-01-10 07:18:47] 2026-01-10 06:17:54,143 | INFO     | all job control threads have been joined
[2026-01-10 07:18:47] 2026-01-10 06:17:54,768 | INFO     | all data control threads have been joined
[2026-01-10 07:18:47] 2026-01-10 06:17:54,851 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:18:47] 2026-01-10 06:17:54,950 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:54,950 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:55,048 | INFO     | [payload] control thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:55,076 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:55,149 | INFO     | [job] control thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:55,400 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:55,529 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:55,774 | INFO     | [data] control thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:55,792 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:56,260 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:56,309 | INFO     | [job] validate thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:56,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:18:47] 2026-01-10 06:17:56,409 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:56,425 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:17:56,857 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:18:00,325 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:18:04,176 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:18:47] 2026-01-10 06:18:05,178 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:18:47] 2026-01-10 06:18:23,988 | INFO     | PID=3827010 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:18:47] 2026-01-10 06:18:23,988 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:18:47] 2026-01-10 06:18:23,988 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:18:47] 2026-01-10 06:18:23,988 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:18:47] 2026-01-10 06:18:41,217 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:18:47] 2026-01-10 06:18:42,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140687953303360)>', '<ExcThread(monitor, started 140687467071232)>']
[2026-01-10 07:18:47] 2026-01-10 06:18:43,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:18:47] 2026-01-10 06:18:43,084 | INFO     | [monitor] control thread has ended
[2026-01-10 07:18:47] 2026-01-10 06:18:47,449 | INFO     | all workflow threads have been joined
[2026-01-10 07:18:47] 2026-01-10 06:18:47,450 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:18:47] 2026-01-10 06:18:47,450 | INFO     | traces error code: 0
[2026-01-10 07:18:47] 2026-01-10 06:18:47,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:18:47] 2026-01-10 06:18:47,501 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:18:47] 2026-01-10 06:18:47,503 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:18:47] 2026-01-10 06:18:47,505 [wrapper] pilotpid: 3827010
[2026-01-10 07:18:47] 2026-01-10 06:18:47,508 [wrapper] Pilot exit status: 0
[2026-01-10 07:18:47] 2026-01-10 06:18:47,515 [wrapper] pandaids: 6963167053
[2026-01-10 07:18:47] 2026-01-10 06:18:47,531 [wrapper] cleanup supervisor_pilot 3847793 3827011
[2026-01-10 07:18:47] 2026-01-10 06:18:47,533 [wrapper] Test setup, not cleaning
[2026-01-10 07:18:47] 2026-01-10 06:18:47,535 [wrapper] apfmon messages muted
[2026-01-10 07:18:47] 2026-01-10 06:18:47,537 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:18:47] 2026-01-10 06:18:47,539 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:18:47]  *** Error codes and diagnostics ***
[2026-01-10 07:18:47]     "exeErrorCode": 0,
[2026-01-10 07:18:47]     "exeErrorDiag": "",
[2026-01-10 07:18:47]     "pilotErrorCode": 0,
[2026-01-10 07:18:47]     "pilotErrorDiag": "",
[2026-01-10 07:18:47]  *** Listing of results directory ***
[2026-01-10 07:18:47] total 440392
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 07:18:47] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc       100 Jan 10 05:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:18:47] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 05:30 run_atlas
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc       105 Jan 10 05:30 job.xml
[2026-01-10 07:18:47] -rw-r--r-- 2 boinc boinc 225625595 Jan 10 05:30 EVNT.47898824._001373.pool.root.1
[2026-01-10 07:18:47] -rw-r--r-- 2 boinc boinc    592393 Jan 10 05:30 input.tar.gz
[2026-01-10 07:18:47] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:30 start_atlas.sh
[2026-01-10 07:18:47] drwxrwx--x 2 boinc boinc      4096 Jan 10 05:30 shared
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:30 boinc_setup_complete
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc      6448 Jan 10 05:30 init_data.xml
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:30 boinc_lockfile
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc      2520 Jan 10 05:30 pandaJob.out
[2026-01-10 07:18:47] -rw------- 1 boinc boinc    989374 Jan 10 05:30 agis_schedconf.cvmfs.json
[2026-01-10 07:18:47] -rw------- 1 boinc boinc   1516240 Jan 10 05:30 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:18:47] drwx------ 5 boinc boinc      4096 Jan 10 05:30 pilot3
[2026-01-10 07:18:47] -rw------- 1 boinc boinc 219033650 Jan 10 07:17 HITS.47898826._035428.pool.root.1
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc       529 Jan 10 07:17 boinc_task_state.xml
[2026-01-10 07:18:47] -rw------- 1 boinc boinc      1011 Jan 10 07:17 memory_monitor_summary.json
[2026-01-10 07:18:47] -rw------- 1 boinc boinc    263323 Jan 10 07:17 log.47898826._035428.job.log.tgz.1
[2026-01-10 07:18:47] -rw------- 1 boinc boinc      7752 Jan 10 07:17 heartbeat.json
[2026-01-10 07:18:47] -rw------- 1 boinc boinc        95 Jan 10 07:18 pilot_heartbeat.json
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc      8192 Jan 10 07:18 boinc_mmap_file
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc        27 Jan 10 07:18 wrapper_checkpoint.txt
[2026-01-10 07:18:47] -rw------- 1 boinc boinc      4824 Jan 10 07:18 pilotlog.txt
[2026-01-10 07:18:47] -rw------- 1 boinc boinc    932903 Jan 10 07:18 log.47898826._035428.job.log.1
[2026-01-10 07:18:47] -rw------- 1 boinc boinc       357 Jan 10 07:18 output.list
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc       620 Jan 10 07:18 runtime_log
[2026-01-10 07:18:47] -rw------- 1 boinc boinc   1218560 Jan 10 07:18 result.tar.gz
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc      8912 Jan 10 07:18 runtime_log.err
[2026-01-10 07:18:47] -rw------- 1 boinc boinc       662 Jan 10 07:18 eaHKDmczFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMolKDmTuaRKm.diag
[2026-01-10 07:18:47] -rw-r--r-- 1 boinc boinc     11926 Jan 10 07:18 stderr.txt
[2026-01-10 07:18:47] HITS file was successfully produced:
[2026-01-10 07:18:47] -rw------- 1 boinc boinc 219033650 Jan 10 07:17 shared/HITS.pool.root.1
[2026-01-10 07:18:47]  *** Contents of shared directory: ***
[2026-01-10 07:18:47] total 436040
[2026-01-10 07:18:47] -rw-r--r-- 2 boinc boinc 225625595 Jan 10 05:30 ATLAS.root_0
[2026-01-10 07:18:47] -rw-r--r-- 2 boinc boinc    592393 Jan 10 05:30 input.tar.gz
[2026-01-10 07:18:47] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:30 start_atlas.sh
[2026-01-10 07:18:47] -rw------- 1 boinc boinc 219033650 Jan 10 07:17 HITS.pool.root.1
[2026-01-10 07:18:47] -rw------- 1 boinc boinc   1218560 Jan 10 07:18 result.tar.gz
07:18:49 (3823291): run_atlas exited; CPU time 18601.855561
07:18:49 (3823291): called boinc_finish(0)

</stderr_txt>
]]>

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