Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:52:40 (4175217): wrapper (7.7.26015): starting
07:52:40 (4175217): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 07:52:40] Arguments: --nthreads 3
[2026-01-10 07:52:40] Threads: 3
[2026-01-10 07:52:40] Checking for CVMFS
[2026-01-10 07:52:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:52:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:52:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:52:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:52:40] 2.9.2.0 3347489 3361 84240 154970 2 57 15611500 36864000 0 130560 0 2096217 99.988 125033 6564 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 07:52:40] CVMFS is ok
[2026-01-10 07:52:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 07:52:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 07:52:40] Further information can be found at the LHC@home message board.
[2026-01-10 07:52:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:52:40] Checking for apptainer binary...
[2026-01-10 07:52:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:52:40] Running /usr/bin/apptainer --version
[2026-01-10 07:52:40] apptainer version 1.4.1-1.1
[2026-01-10 07:52:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:52:40] thA325a
[2026-01-10 07:52:40] apptainer works
[2026-01-10 07:52:40] Set ATHENA_PROC_NUMBER=3
[2026-01-10 07:52:40] Set ATHENA_CORE_NUMBER=3
[2026-01-10 07:52:40] Starting ATLAS job with PandaID=6963155952
[2026-01-10 07:52:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:52:59]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,604 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,604 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,604 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:52:59] 2026-01-10 08:52:13,604 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,604 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:52:59] 2026-01-10 08:52:13,604 | INFO     | job 6963155952 has completed (purged errors)
[2026-01-10 09:52:59] 2026-01-10 08:52:13,604 | INFO     | overall cleanup function is called
[2026-01-10 09:52:59] 2026-01-10 08:52:14,610 | INFO     | --- collectZombieJob: --- 10, [4185386]
[2026-01-10 09:52:59] 2026-01-10 08:52:14,610 | INFO     | zombie collector waiting for pid 4185386
[2026-01-10 09:52:59] 2026-01-10 08:52:14,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:52:59] 2026-01-10 08:52:14,610 | INFO     | collected zombie processes
[2026-01-10 09:52:59] 2026-01-10 08:52:14,610 | INFO     | will attempt to kill all subprocesses of pid=4185386
[2026-01-10 09:52:59] 2026-01-10 08:52:14,660 | INFO     | process IDs to be killed: [4185386] (in reverse order)
[2026-01-10 09:52:59] 2026-01-10 08:52:14,685 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:52:59] 2026-01-10 08:52:14,685 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:52:59] 2026-01-10 08:52:14,687 | INFO     | did not find any defunct processes belonging to 4185386
[2026-01-10 09:52:59] 2026-01-10 08:52:14,688 | INFO     | did not find any defunct processes belonging to 4185386
[2026-01-10 09:52:59] 2026-01-10 08:52:14,688 | INFO     | ready for new job
[2026-01-10 09:52:59] 2026-01-10 08:52:14,688 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:52:59] 2026-01-10 08:52:14,689 | INFO     | ***************************************
[2026-01-10 09:52:59] 2026-01-10 08:52:14,689 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:52:59] 2026-01-10 08:52:14,689 | INFO     | ***************************************
[2026-01-10 09:52:59] 2026-01-10 08:52:14,689 | INFO     | 
[2026-01-10 09:52:59] 2026-01-10 08:52:14,689 | INFO     | architecture information:
[2026-01-10 09:52:59] 2026-01-10 08:52:14,689 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:52:59] 2026-01-10 08:52:14,698 | INFO     | cat /etc/os-release:
[2026-01-10 09:52:59] NAME="CentOS Linux"
[2026-01-10 09:52:59] VERSION="7 (Core)"
[2026-01-10 09:52:59] ID="centos"
[2026-01-10 09:52:59] ID_LIKE="rhel fedora"
[2026-01-10 09:52:59] VERSION_ID="7"
[2026-01-10 09:52:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:52:59] ANSI_COLOR="0;31"
[2026-01-10 09:52:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:52:59] HOME_URL="https://www.centos.org/"
[2026-01-10 09:52:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:52:59] 
[2026-01-10 09:52:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:52:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:52:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:52:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:52:59] 
[2026-01-10 09:52:59] 2026-01-10 08:52:14,698 | INFO     | ***************************************
[2026-01-10 09:52:59] 2026-01-10 08:52:15,201 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 09:52:59] 2026-01-10 08:52:15,214 | INFO     | sufficient remaining disk space (244384268288 B)
[2026-01-10 09:52:59] 2026-01-10 08:52:15,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:52:59] 2026-01-10 08:52:15,214 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:52:59] 2026-01-10 08:52:15,214 | INFO     | update_server=False
[2026-01-10 09:52:59] 2026-01-10 08:52:15,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:52:59] 2026-01-10 08:52:15,214 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:52:59] 2026-01-10 08:52:15,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:52:59] 2026-01-10 08:52:15,286 | INFO     | aborting loop
[2026-01-10 09:52:59] 2026-01-10 08:52:15,421 | INFO     | all payload control threads have been joined
[2026-01-10 09:52:59] 2026-01-10 08:52:15,525 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:52:59] 2026-01-10 08:52:15,556 | INFO     | all job control threads have been joined
[2026-01-10 09:52:59] 2026-01-10 08:52:16,154 | INFO     | all data control threads have been joined
[2026-01-10 09:52:59] 2026-01-10 08:52:16,220 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:16,220 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:16,292 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:16,336 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:16,427 | INFO     | [payload] control thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:16,562 | INFO     | [job] control thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:16,938 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:17,114 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:17,160 | INFO     | [data] control thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:17,168 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:17,430 | INFO     | [job] validate thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:17,430 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:17,432 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:17,531 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:18,101 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:52:59] 2026-01-10 08:52:22,107 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:25,927 | INFO     | job.realtimelogging is not enabled
[2026-01-10 09:52:59] 2026-01-10 08:52:26,933 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:52:59] 2026-01-10 08:52:44,749 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-01-10 09:52:59] 2026-01-10 08:52:46,271 | INFO     | PID=4178942 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 09:52:59] 2026-01-10 08:52:46,271 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:52:59] 2026-01-10 08:52:46,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:52:59] 2026-01-10 08:52:46,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:52:59] 2026-01-10 08:52:53,771 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:52:59] 2026-01-10 08:52:53,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140408111134528)>', '<ExcThread(monitor, started 140407623108352)>']
[2026-01-10 09:52:59] 2026-01-10 08:52:54,312 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:52:59] 2026-01-10 08:52:54,312 | INFO     | [monitor] control thread has ended
[2026-01-10 09:52:59] 2026-01-10 08:52:59,016 | INFO     | all workflow threads have been joined
[2026-01-10 09:52:59] 2026-01-10 08:52:59,016 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:52:59] 2026-01-10 08:52:59,016 | INFO     | traces error code: 0
[2026-01-10 09:52:59] 2026-01-10 08:52:59,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:52:59] 2026-01-10 08:52:59,067 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:52:59] 2026-01-10 08:52:59,070 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:52:59] 2026-01-10 08:52:59,072 [wrapper] pilotpid: 4178942
[2026-01-10 09:52:59] 2026-01-10 08:52:59,074 [wrapper] Pilot exit status: 0
[2026-01-10 09:52:59] 2026-01-10 08:52:59,082 [wrapper] pandaids: 6963155952
[2026-01-10 09:52:59] 2026-01-10 08:52:59,099 [wrapper] cleanup supervisor_pilot    9602 4178943
[2026-01-10 09:52:59] 2026-01-10 08:52:59,102 [wrapper] Test setup, not cleaning
[2026-01-10 09:52:59] 2026-01-10 08:52:59,104 [wrapper] apfmon messages muted
[2026-01-10 09:52:59] 2026-01-10 08:52:59,106 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:52:59] 2026-01-10 08:52:59,109 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:52:59]  *** Error codes and diagnostics ***
[2026-01-10 09:52:59]     "exeErrorCode": 0,
[2026-01-10 09:52:59]     "exeErrorDiag": "",
[2026-01-10 09:52:59]     "pilotErrorCode": 0,
[2026-01-10 09:52:59]     "pilotErrorDiag": "",
[2026-01-10 09:52:59]  *** Listing of results directory ***
[2026-01-10 09:52:59] total 445388
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 09:52:59] -rwx------ 1 boinc boinc     36322 Jan  8 20:06 runpilot2-wrapper.sh
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:07 queuedata.json
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc       100 Jan 10 07:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:52:59] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 07:52 run_atlas
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc       105 Jan 10 07:52 job.xml
[2026-01-10 09:52:59] -rw-r--r-- 2 boinc boinc 224015502 Jan 10 07:52 EVNT.47898824._000886.pool.root.1
[2026-01-10 09:52:59] drwxrwx--x 2 boinc boinc      4096 Jan 10 07:52 shared
[2026-01-10 09:52:59] -rw-r--r-- 2 boinc boinc    592391 Jan 10 07:52 input.tar.gz
[2026-01-10 09:52:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:52 start_atlas.sh
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:52 boinc_setup_complete
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc      6440 Jan 10 07:52 init_data.xml
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc         0 Jan 10 07:52 boinc_lockfile
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc      2519 Jan 10 07:52 pandaJob.out
[2026-01-10 09:52:59] -rw------- 1 boinc boinc    989374 Jan 10 07:52 agis_schedconf.cvmfs.json
[2026-01-10 09:52:59] -rw------- 1 boinc boinc   1516240 Jan 10 07:52 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:52:59] drwx------ 5 boinc boinc      4096 Jan 10 07:52 pilot3
[2026-01-10 09:52:59] -rw------- 1 boinc boinc 225488965 Jan 10 09:51 HITS.47898826._031173.pool.root.1
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc       530 Jan 10 09:51 boinc_task_state.xml
[2026-01-10 09:52:59] -rw------- 1 boinc boinc      1028 Jan 10 09:52 memory_monitor_summary.json
[2026-01-10 09:52:59] -rw------- 1 boinc boinc    301170 Jan 10 09:52 log.47898826._031173.job.log.tgz.1
[2026-01-10 09:52:59] -rw------- 1 boinc boinc      7777 Jan 10 09:52 heartbeat.json
[2026-01-10 09:52:59] -rw------- 1 boinc boinc        95 Jan 10 09:52 pilot_heartbeat.json
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc        27 Jan 10 09:52 wrapper_checkpoint.txt
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc      8192 Jan 10 09:52 boinc_mmap_file
[2026-01-10 09:52:59] -rw------- 1 boinc boinc      4824 Jan 10 09:52 pilotlog.txt
[2026-01-10 09:52:59] -rw------- 1 boinc boinc   1030883 Jan 10 09:52 log.47898826._031173.job.log.1
[2026-01-10 09:52:59] -rw------- 1 boinc boinc       357 Jan 10 09:52 output.list
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc       620 Jan 10 09:52 runtime_log
[2026-01-10 09:52:59] -rw------- 1 boinc boinc   1351680 Jan 10 09:52 result.tar.gz
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc      8902 Jan 10 09:52 runtime_log.err
[2026-01-10 09:52:59] -rw------- 1 boinc boinc       665 Jan 10 09:52 hCdNDmYWAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmb0fKDmMKZMEo.diag
[2026-01-10 09:52:59] -rw-r--r-- 1 boinc boinc     12336 Jan 10 09:52 stderr.txt
[2026-01-10 09:52:59] HITS file was successfully produced:
[2026-01-10 09:52:59] -rw------- 1 boinc boinc 225488965 Jan 10 09:51 shared/HITS.pool.root.1
[2026-01-10 09:52:59]  *** Contents of shared directory: ***
[2026-01-10 09:52:59] total 440900
[2026-01-10 09:52:59] -rw-r--r-- 2 boinc boinc 224015502 Jan 10 07:52 ATLAS.root_0
[2026-01-10 09:52:59] -rw-r--r-- 2 boinc boinc    592391 Jan 10 07:52 input.tar.gz
[2026-01-10 09:52:59] -rw-r--r-- 2 boinc boinc     15847 Jan 10 07:52 start_atlas.sh
[2026-01-10 09:52:59] -rw------- 1 boinc boinc 225488965 Jan 10 09:51 HITS.pool.root.1
[2026-01-10 09:52:59] -rw------- 1 boinc boinc   1351680 Jan 10 09:52 result.tar.gz
09:53:00 (4175217): run_atlas exited; CPU time 20813.819319
09:53:00 (4175217): called boinc_finish(0)

</stderr_txt>
]]>

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