Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:49:51 (2395415): wrapper (7.7.26015): starting
05:49:51 (2395415): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 05:49:51] Arguments: --nthreads 3
[2026-01-10 05:49:51] Threads: 3
[2026-01-10 05:49:51] Checking for CVMFS
[2026-01-10 05:49:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 05:49:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 05:49:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 05:49:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 05:49:51] 2.9.2.0 1566360 3337 82660 154968 2 57 23005120 36864000 0 130560 0 2165816 99.988 127882 6602 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 05:49:51] CVMFS is ok
[2026-01-10 05:49:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 05:49:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 05:49:51] Further information can be found at the LHC@home message board.
[2026-01-10 05:49:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 05:49:51] Checking for apptainer binary...
[2026-01-10 05:49:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 05:49:51] Running /usr/bin/apptainer --version
[2026-01-10 05:49:51] apptainer version 1.4.1-1.1
[2026-01-10 05:49:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 05:49:51] magicA161a
[2026-01-10 05:49:51] apptainer works
[2026-01-10 05:49:51] Set ATHENA_PROC_NUMBER=3
[2026-01-10 05:49:51] Set ATHENA_CORE_NUMBER=3
[2026-01-10 05:49:51] Starting ATLAS job with PandaID=6963167143
[2026-01-10 05:49:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:41:10]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:41:10] 2026-01-10 06:40:49,451 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:41:10] 2026-01-10 06:40:49,451 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:41:10] 2026-01-10 06:40:49,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:41:10] 2026-01-10 06:40:49,451 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:41:10] 2026-01-10 06:40:49,451 | INFO     | aborting loop
[2026-01-10 07:41:10] 2026-01-10 06:40:49,847 | INFO     | all data control threads have been joined
[2026-01-10 07:41:10] 2026-01-10 06:40:50,456 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:50,456 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:50,457 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:50,561 | INFO     | all job control threads have been joined
[2026-01-10 07:41:10] 2026-01-10 06:40:50,671 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:50,827 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:50,853 | INFO     | [data] control thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:50,954 | INFO     | all payload control threads have been joined
[2026-01-10 07:41:10] 2026-01-10 06:40:51,177 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:41:10] 2026-01-10 06:40:51,354 | INFO     | [job] validate thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:51,427 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:51,431 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:51,457 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:51,481 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:51,567 | INFO     | [job] control thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:51,787 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:51,959 | INFO     | [payload] control thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:55,184 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:40:59,883 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:41:10] 2026-01-10 06:41:00,888 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:41:10] 2026-01-10 06:41:04,879 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:41:10] 2026-01-10 06:41:05,592 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567280518976)>', '<ExcThread(monitor, started 140566939551488)>']
[2026-01-10 07:41:10] 2026-01-10 06:41:06,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:41:10] 2026-01-10 06:41:06,540 | INFO     | [monitor] control thread has ended
[2026-01-10 07:41:10] 2026-01-10 06:41:10,617 | INFO     | all workflow threads have been joined
[2026-01-10 07:41:10] 2026-01-10 06:41:10,618 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:41:10] 2026-01-10 06:41:10,618 | INFO     | traces error code: 0
[2026-01-10 07:41:10] 2026-01-10 06:41:10,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:41:10] 2026-01-10 06:41:10,665 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:41:10] 2026-01-10 06:41:10,667 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:41:10] 2026-01-10 06:41:10,669 [wrapper] pilotpid: 2399141
[2026-01-10 07:41:10] 2026-01-10 06:41:10,671 [wrapper] Pilot exit status: 0
[2026-01-10 07:41:10] 2026-01-10 06:41:10,678 [wrapper] pandaids: 6963167143
[2026-01-10 07:41:10] 2026-01-10 06:41:10,694 [wrapper] cleanup supervisor_pilot 2420057 2399142
[2026-01-10 07:41:10] 2026-01-10 06:41:10,696 [wrapper] Test setup, not cleaning
[2026-01-10 07:41:10] 2026-01-10 06:41:10,699 [wrapper] apfmon messages muted
[2026-01-10 07:41:10] 2026-01-10 06:41:10,701 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:41:10] 2026-01-10 06:41:10,703 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:41:10]  *** Error codes and diagnostics ***
[2026-01-10 07:41:10]     "exeErrorCode": 0,
[2026-01-10 07:41:10]     "exeErrorDiag": "",
[2026-01-10 07:41:10]     "pilotErrorCode": 0,
[2026-01-10 07:41:10]     "pilotErrorDiag": "",
[2026-01-10 07:41:10]  *** Listing of results directory ***
[2026-01-10 07:41:10] total 433220
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 07:41:10] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc       100 Jan 10 05:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:41:10] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 05:49 run_atlas
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc       105 Jan 10 05:49 job.xml
[2026-01-10 07:41:10] -rw-r--r-- 2 boinc boinc 222828774 Jan 10 05:49 EVNT.47898824._001376.pool.root.1
[2026-01-10 07:41:10] -rw-r--r-- 2 boinc boinc    592396 Jan 10 05:49 input.tar.gz
[2026-01-10 07:41:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:49 start_atlas.sh
[2026-01-10 07:41:10] drwxrwx--x 2 boinc boinc      4096 Jan 10 05:49 shared
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:49 boinc_setup_complete
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc      6448 Jan 10 05:49 init_data.xml
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:49 boinc_lockfile
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc      2520 Jan 10 05:49 pandaJob.out
[2026-01-10 07:41:10] -rw------- 1 boinc boinc    989374 Jan 10 05:49 agis_schedconf.cvmfs.json
[2026-01-10 07:41:10] -rw------- 1 boinc boinc   1516240 Jan 10 05:49 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:41:10] drwx------ 5 boinc boinc      4096 Jan 10 05:49 pilot3
[2026-01-10 07:41:10] -rw------- 1 boinc boinc 214392374 Jan 10 07:40 HITS.47898826._035518.pool.root.1
[2026-01-10 07:41:10] -rw------- 1 boinc boinc        95 Jan 10 07:40 pilot_heartbeat.json
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc       529 Jan 10 07:40 boinc_task_state.xml
[2026-01-10 07:41:10] -rw------- 1 boinc boinc      1015 Jan 10 07:40 memory_monitor_summary.json
[2026-01-10 07:41:10] -rw------- 1 boinc boinc    288114 Jan 10 07:40 log.47898826._035518.job.log.tgz.1
[2026-01-10 07:41:10] -rw------- 1 boinc boinc      7770 Jan 10 07:40 heartbeat.json
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc      8192 Jan 10 07:41 boinc_mmap_file
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc        27 Jan 10 07:41 wrapper_checkpoint.txt
[2026-01-10 07:41:10] -rw------- 1 boinc boinc      4628 Jan 10 07:41 pilotlog.txt
[2026-01-10 07:41:10] -rw------- 1 boinc boinc    961717 Jan 10 07:41 log.47898826._035518.job.log.1
[2026-01-10 07:41:10] -rw------- 1 boinc boinc       357 Jan 10 07:41 output.list
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc       620 Jan 10 07:41 runtime_log
[2026-01-10 07:41:10] -rw------- 1 boinc boinc   1269760 Jan 10 07:41 result.tar.gz
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc      8917 Jan 10 07:41 runtime_log.err
[2026-01-10 07:41:10] -rw------- 1 boinc boinc       663 Jan 10 07:41 I2QLDmdzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdZgKDmgZRHRn.diag
[2026-01-10 07:41:10] -rw-r--r-- 1 boinc boinc      6852 Jan 10 07:41 stderr.txt
[2026-01-10 07:41:10] HITS file was successfully produced:
[2026-01-10 07:41:10] -rw------- 1 boinc boinc 214392374 Jan 10 07:40 shared/HITS.pool.root.1
[2026-01-10 07:41:10]  *** Contents of shared directory: ***
[2026-01-10 07:41:10] total 428820
[2026-01-10 07:41:10] -rw-r--r-- 2 boinc boinc 222828774 Jan 10 05:49 ATLAS.root_0
[2026-01-10 07:41:10] -rw-r--r-- 2 boinc boinc    592396 Jan 10 05:49 input.tar.gz
[2026-01-10 07:41:10] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:49 start_atlas.sh
[2026-01-10 07:41:10] -rw------- 1 boinc boinc 214392374 Jan 10 07:40 HITS.pool.root.1
[2026-01-10 07:41:10] -rw------- 1 boinc boinc   1269760 Jan 10 07:41 result.tar.gz
07:41:12 (2395415): run_atlas exited; CPU time 19258.353697
07:41:12 (2395415): called boinc_finish(0)

</stderr_txt>
]]>

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