Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:27:46 (27616): wrapper (7.7.26015): starting
09:27:46 (27616): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 09:27:46] Arguments: --nthreads 8
[2026-01-09 09:27:46] Threads: 8
[2026-01-09 09:27:46] Checking for CVMFS
[2026-01-09 09:27:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:27:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:27:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:27:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:27:46] 2.11.2.0 14221 181147 137364 154946 0 186 10243583 18432000 1705 130560 0 122168118 99.980 6962051 32160 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 09:27:46] CVMFS is ok
[2026-01-09 09:27:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:27:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:27:46] Further information can be found at the LHC@home message board.
[2026-01-09 09:27:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:27:46] Checking for apptainer binary...
[2026-01-09 09:27:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:27:46] Running /usr/bin/apptainer --version
[2026-01-09 09:27:46] apptainer version 1.3.2-1.el7
[2026-01-09 09:27:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:27:47] c-206-9.aglt2.org
[2026-01-09 09:27:47] apptainer works
[2026-01-09 09:27:47] Set ATHENA_PROC_NUMBER=8
[2026-01-09 09:27:47] Set ATHENA_CORE_NUMBER=8
[2026-01-09 09:27:47] Starting ATLAS job with PandaID=6963165995
[2026-01-09 09:27:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:51:39]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:51:39] 2026-01-09 18:51:04,502 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:51:39] 2026-01-09 18:51:05,953 | INFO     | time since job start (15785s) is within the limit (349056.0s)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,379 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 13:51:39] 2026-01-09 18:51:06,383 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1973.1666666666667
[2026-01-09 13:51:39] 2026-01-09 18:51:06,385 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963165995/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,386 | INFO     | extracted standard info from prmon json
[2026-01-09 13:51:39] 2026-01-09 18:51:06,386 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:51:39] 2026-01-09 18:51:06,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:51:39] 2026-01-09 18:51:06,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:51:39] 2026-01-09 18:51:06,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:51:39] 2026-01-09 18:51:06,390 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:51:39] 2026-01-09 18:51:06,391 | INFO     | sum of square deviations: 5387301010.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,392 | INFO     | sum of deviations: 12981856520.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,392 | INFO     | mean x: 1767976773.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,392 | INFO     | mean y: 2469595.996138996
[2026-01-09 13:51:39] 2026-01-09 18:51:06,393 | INFO     | intersect: -4257849394.0093236
[2026-01-09 13:51:39] 2026-01-09 18:51:06,393 | INFO     | chi2: 2.052305065405037
[2026-01-09 13:51:39] 2026-01-09 18:51:06,393 | INFO     | sum of square deviations: 5081276667.5
[2026-01-09 13:51:39] 2026-01-09 18:51:06,395 | INFO     | sum of deviations: 29661254056.5
[2026-01-09 13:51:39] 2026-01-09 18:51:06,395 | INFO     | mean x: 1767976620.5
[2026-01-09 13:51:39] 2026-01-09 18:51:06,395 | INFO     | mean y: 2477774.570866142
[2026-01-09 13:51:39] 2026-01-09 18:51:06,395 | INFO     | intersect: -10317842715.359
[2026-01-09 13:51:39] 2026-01-09 18:51:06,395 | INFO     | chi2: 1.2755333306902672
[2026-01-09 13:51:39] 2026-01-09 18:51:06,396 | INFO     | current chi2=1.2755333306902672 (change=37.84874616393681 %)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,396 | INFO     | sum of square deviations: 4787066500.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,397 | INFO     | sum of deviations: 28940180895.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,397 | INFO     | mean x: 1767976468.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,397 | INFO     | mean y: 2477400.7871485944
[2026-01-09 13:51:39] 2026-01-09 18:51:06,398 | INFO     | intersect: -10685813393.172613
[2026-01-09 13:51:39] 2026-01-09 18:51:06,398 | INFO     | chi2: 1.2760078782511974
[2026-01-09 13:51:39] 2026-01-09 18:51:06,398 | INFO     | current chi2=1.2760078782511974 (change=-0.03720385422413325 %)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,398 | INFO     | right removable region: 248
[2026-01-09 13:51:39] 2026-01-09 18:51:06,398 | INFO     | sum of square deviations: 5081276667.5
[2026-01-09 13:51:39] 2026-01-09 18:51:06,400 | INFO     | sum of deviations: -22840170586.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,400 | INFO     | mean x: 1767976925.5
[2026-01-09 13:51:39] 2026-01-09 18:51:06,400 | INFO     | mean y: 2487294.251968504
[2026-01-09 13:51:39] 2026-01-09 18:51:06,400 | INFO     | intersect: 7949485108.562935
[2026-01-09 13:51:39] 2026-01-09 18:51:06,401 | INFO     | chi2: 0.8107573994695004
[2026-01-09 13:51:39] 2026-01-09 18:51:06,401 | INFO     | current chi2=0.8107573994695004 (change=60.49527854624811 %)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,401 | INFO     | sum of square deviations: 4787066500.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,402 | INFO     | sum of deviations: -22284746859.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,402 | INFO     | mean x: 1767977078.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,403 | INFO     | mean y: 2487003.0843373495
[2026-01-09 13:51:39] 2026-01-09 18:51:06,403 | INFO     | intersect: 8232772008.681084
[2026-01-09 13:51:39] 2026-01-09 18:51:06,403 | INFO     | chi2: 0.8107328313816544
[2026-01-09 13:51:39] 2026-01-09 18:51:06,403 | INFO     | current chi2=0.8107328313816544 (change=0.0030302637832336 %)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,403 | INFO     | left removable region: 20
[2026-01-09 13:51:39] 2026-01-09 18:51:06,403 | INFO     | sum of square deviations: 3675146117.0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,405 | INFO     | sum of deviations: -2294395927.9999995
[2026-01-09 13:51:39] 2026-01-09 18:51:06,405 | INFO     | mean x: 1767977047.5
[2026-01-09 13:51:39] 2026-01-09 18:51:06,405 | INFO     | mean y: 2493849.964912281
[2026-01-09 13:51:39] 2026-01-09 18:51:06,405 | INFO     | intersect: 1106242982.5008204
[2026-01-09 13:51:39] 2026-01-09 18:51:06,405 | INFO     | chi2: 0.01659117775713477
[2026-01-09 13:51:39] 2026-01-09 18:51:06,406 | INFO     | current memory leak: -0.62 B/s (using 228 data points, chi2=0.02)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,406 | INFO     | could have reported an average CPU frequency of 2381 MHz (12 samples)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,406 | INFO     | ..............................
[2026-01-09 13:51:39] 2026-01-09 18:51:06,406 | INFO     | . Timing measurements:
[2026-01-09 13:51:39] 2026-01-09 18:51:06,406 | INFO     | . get job = 0 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,406 | INFO     | . initial setup = 2 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,407 | INFO     | . payload setup = 5 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,407 | INFO     | . stage-in = 0 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,407 | INFO     | . payload execution = 15755 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,407 | INFO     | . stage-out = 1 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,407 | INFO     | . log creation = 0 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,407 | INFO     | ..............................
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | 
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | job summary report
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | --------------------------------------------------
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | PanDA job id: 6963165995
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | task id: 47898826
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | errors: (none)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | pilot state: finished 
[2026-01-09 13:51:39] 2026-01-09 18:51:06,483 | INFO     | transexitcode: 0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | exeerrorcode: 0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | exeerrordiag: 
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | exitcode: 0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | exitmsg: OK
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | cpuconsumptiontime: 120697 s
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | nevents: 400
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | neventsw: 0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | pid: 5512
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | pgrp: 5512
[2026-01-09 13:51:39] 2026-01-09 18:51:06,484 | INFO     | corecount: 8
[2026-01-09 13:51:39] 2026-01-09 18:51:06,485 | INFO     | event service: False
[2026-01-09 13:51:39] 2026-01-09 18:51:06,485 | INFO     | sizes: {0: 2283971, 4: 2284233, 11: 2284261, 15763: 2315553, 15764: 2315552, 15766: 2324790, 15772: 2324928}
[2026-01-09 13:51:39] 2026-01-09 18:51:06,485 | INFO     | --------------------------------------------------
[2026-01-09 13:51:39] 2026-01-09 18:51:06,485 | INFO     | 
[2026-01-09 13:51:39] 2026-01-09 18:51:06,485 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 13:51:39] 2026-01-09 18:51:06,500 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,500 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,500 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,500 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,500 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,500 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,501 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,502 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,502 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,502 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,502 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:51:39] 2026-01-09 18:51:06,502 | INFO     | job 6963165995 has completed (purged errors)
[2026-01-09 13:51:39] 2026-01-09 18:51:06,502 | INFO     | overall cleanup function is called
[2026-01-09 13:51:39] 2026-01-09 18:51:07,509 | INFO     | --- collectZombieJob: --- 10, [5512]
[2026-01-09 13:51:39] 2026-01-09 18:51:07,510 | INFO     | zombie collector waiting for pid 5512
[2026-01-09 13:51:39] 2026-01-09 18:51:07,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:51:39] 2026-01-09 18:51:07,510 | INFO     | collected zombie processes
[2026-01-09 13:51:39] 2026-01-09 18:51:07,510 | INFO     | will attempt to kill all subprocesses of pid=5512
[2026-01-09 13:51:39] 2026-01-09 18:51:07,615 | INFO     | process IDs to be killed: [5512] (in reverse order)
[2026-01-09 13:51:39] 2026-01-09 18:51:07,660 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:51:39] 2026-01-09 18:51:07,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:51:39] 2026-01-09 18:51:07,663 | INFO     | did not find any defunct processes belonging to 5512
[2026-01-09 13:51:39] 2026-01-09 18:51:07,665 | INFO     | did not find any defunct processes belonging to 5512
[2026-01-09 13:51:39] 2026-01-09 18:51:07,666 | INFO     | ready for new job
[2026-01-09 13:51:39] 2026-01-09 18:51:07,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:51:39] 2026-01-09 18:51:07,667 | INFO     | ***************************************
[2026-01-09 13:51:39] 2026-01-09 18:51:07,667 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:51:39] 2026-01-09 18:51:07,667 | INFO     | ***************************************
[2026-01-09 13:51:39] 2026-01-09 18:51:07,668 | INFO     | 
[2026-01-09 13:51:39] 2026-01-09 18:51:07,668 | INFO     | architecture information:
[2026-01-09 13:51:39] 2026-01-09 18:51:07,669 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:51:39] 2026-01-09 18:51:07,679 | INFO     | cat /etc/os-release:
[2026-01-09 13:51:39] NAME="CentOS Linux"
[2026-01-09 13:51:39] VERSION="7 (Core)"
[2026-01-09 13:51:39] ID="centos"
[2026-01-09 13:51:39] ID_LIKE="rhel fedora"
[2026-01-09 13:51:39] VERSION_ID="7"
[2026-01-09 13:51:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:51:39] ANSI_COLOR="0;31"
[2026-01-09 13:51:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:51:39] HOME_URL="https://www.centos.org/"
[2026-01-09 13:51:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:51:39] 
[2026-01-09 13:51:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:51:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:51:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:51:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:51:39] 
[2026-01-09 13:51:39] 2026-01-09 18:51:07,680 | INFO     | ***************************************
[2026-01-09 13:51:39] 2026-01-09 18:51:08,182 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 13:51:39] 2026-01-09 18:51:08,196 | INFO     | sufficient remaining disk space (28053602304 B)
[2026-01-09 13:51:39] 2026-01-09 18:51:08,196 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:51:39] 2026-01-09 18:51:08,196 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:51:39] 2026-01-09 18:51:08,196 | INFO     | update_server=False
[2026-01-09 13:51:39] 2026-01-09 18:51:08,196 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:51:39] 2026-01-09 18:51:08,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:51:39] 2026-01-09 18:51:08,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:51:39] 2026-01-09 18:51:08,197 | INFO     | aborting loop
[2026-01-09 13:51:39] 2026-01-09 18:51:08,519 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:51:39] 2026-01-09 18:51:08,613 | INFO     | all data control threads have been joined
[2026-01-09 13:51:39] 2026-01-09 18:51:09,167 | INFO     | all payload control threads have been joined
[2026-01-09 13:51:39] 2026-01-09 18:51:09,202 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:09,202 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:09,202 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:09,586 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:09,619 | INFO     | [data] control thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:09,885 | INFO     | all job control threads have been joined
[2026-01-09 13:51:39] 2026-01-09 18:51:09,899 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:09,986 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,003 | INFO     | [job] validate thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,013 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,057 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,072 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,172 | INFO     | [payload] control thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,522 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,705 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:10,887 | INFO     | [job] control thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:11,089 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:51:39] 2026-01-09 18:51:15,095 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:51:39] 2026-01-09 18:51:26,147 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:51:39] 2026-01-09 18:51:27,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314007070528)>', '<ExcThread(monitor, started 140313326761728)>']
[2026-01-09 13:51:39] 2026-01-09 18:51:32,076 | INFO     | all workflow threads have been joined
[2026-01-09 13:51:39] 2026-01-09 18:51:32,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:51:39] 2026-01-09 18:51:32,076 | INFO     | traces error code: 0
[2026-01-09 13:51:39] 2026-01-09 18:51:32,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:51:39] 2026-01-09 18:51:39,162 | INFO     | PID=31324 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:51:39] 2026-01-09 18:51:39,162 | INFO     | .. there are 3 such processes running
[2026-01-09 13:51:39] 2026-01-09 18:51:39,162 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:51:39] 2026-01-09 18:51:39,162 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:51:39] 2026-01-09 18:51:39,162 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:51:39] 2026-01-09 18:51:39,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:51:39] 2026-01-09 18:51:39,162 | INFO     | [monitor] control thread has ended
[2026-01-09 13:51:39] 2026-01-09 18:51:39,255 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:51:39] 2026-01-09 18:51:39,258 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:51:39] 2026-01-09 18:51:39,260 [wrapper] pilotpid: 31324
[2026-01-09 13:51:39] 2026-01-09 18:51:39,262 [wrapper] Pilot exit status: 0
[2026-01-09 13:51:39] 2026-01-09 18:51:39,271 [wrapper] pandaids: 6963165995
[2026-01-09 13:51:39] 2026-01-09 18:51:39,299 [wrapper] cleanup supervisor_pilot 31110 31325
[2026-01-09 13:51:39] 2026-01-09 18:51:39,301 [wrapper] Test setup, not cleaning
[2026-01-09 13:51:39] 2026-01-09 18:51:39,304 [wrapper] apfmon messages muted
[2026-01-09 13:51:39] 2026-01-09 18:51:39,306 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:51:39] 2026-01-09 18:51:39,308 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:51:39]  *** Error codes and diagnostics ***
[2026-01-09 13:51:39]     "exeErrorCode": 0,
[2026-01-09 13:51:39]     "exeErrorDiag": "",
[2026-01-09 13:51:39]     "pilotErrorCode": 0,
[2026-01-09 13:51:39]     "pilotErrorDiag": "",
[2026-01-09 13:51:39]  *** Listing of results directory ***
[2026-01-09 13:51:39] total 444500
[2026-01-09 13:51:39] -rwx------ 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:57 queuedata.json
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas       100 Jan  9 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:51:39] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 09:27 run_atlas
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas       105 Jan  9 09:27 job.xml
[2026-01-09 13:51:39] -rw-r--r-- 2 boincer umatlas 225341910 Jan  9 09:27 EVNT.47898824._001360.pool.root.1
[2026-01-09 13:51:39] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 09:27 start_atlas.sh
[2026-01-09 13:51:39] drwxrwx--x 2 boincer umatlas      4096 Jan  9 09:27 shared
[2026-01-09 13:51:39] -rw-r--r-- 2 boincer umatlas    592398 Jan  9 09:27 input.tar.gz
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas         0 Jan  9 09:27 boinc_lockfile
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 09:27 pandaJob.out
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas        57 Jan  9 09:27 setup.sh.local
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas    989377 Jan  9 09:27 agis_schedconf.cvmfs.json
[2026-01-09 13:51:39] drwx------ 5 boincer umatlas      4096 Jan  9 09:28 pilot3
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas      5951 Jan  9 13:49 init_data.xml
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas 220588502 Jan  9 13:50 HITS.47898826._035108.pool.root.1
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas       532 Jan  9 13:50 boinc_task_state.xml
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas        95 Jan  9 13:50 pilot_heartbeat.json
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas      1048 Jan  9 13:50 memory_monitor_summary.json
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas   1516240 Jan  9 13:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas    478034 Jan  9 13:51 log.47898826._035108.job.log.tgz.1
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas      7850 Jan  9 13:51 heartbeat.json
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas        29 Jan  9 13:51 wrapper_checkpoint.txt
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 13:51 boinc_mmap_file
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas       820 Jan  9 13:51 pilotlog.txt
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas   2185723 Jan  9 13:51 log.47898826._035108.job.log.1
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas       357 Jan  9 13:51 output.list
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas       620 Jan  9 13:51 runtime_log
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas   2682880 Jan  9 13:51 result.tar.gz
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas      9338 Jan  9 13:51 runtime_log.err
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas       662 Jan  9 13:51 RhlNDmPzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGmlKDmFgrM4m.diag
[2026-01-09 13:51:39] -rw-r--r-- 1 boincer umatlas     21066 Jan  9 13:51 stderr.txt
[2026-01-09 13:51:39] HITS file was successfully produced:
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas 220588502 Jan  9 13:50 shared/HITS.pool.root.1
[2026-01-09 13:51:39]  *** Contents of shared directory: ***
[2026-01-09 13:51:39] total 438704
[2026-01-09 13:51:39] -rw-r--r-- 2 boincer umatlas 225341910 Jan  9 09:27 ATLAS.root_0
[2026-01-09 13:51:39] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 09:27 start_atlas.sh
[2026-01-09 13:51:39] -rw-r--r-- 2 boincer umatlas    592398 Jan  9 09:27 input.tar.gz
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas 220588502 Jan  9 13:50 HITS.pool.root.1
[2026-01-09 13:51:39] -rw------- 1 boincer umatlas   2682880 Jan  9 13:51 result.tar.gz
13:51:40 (27616): run_atlas exited; CPU time 120917.351097
13:51:40 (27616): called boinc_finish(0)

</stderr_txt>
]]>

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