Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:59:40 (2754562): wrapper (7.7.26015): starting
01:59:40 (2754562): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 01:59:40] Arguments: --nthreads 3
[2026-01-10 01:59:40] Threads: 3
[2026-01-10 01:59:40] Checking for CVMFS
[2026-01-10 01:59:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 01:59:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 01:59:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 01:59:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 01:59:40] 2.9.2.0 2006203 3122 80916 154962 3 57 33907980 36864000 0 130560 0 1933419 99.987 119512 5916 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 01:59:40] CVMFS is ok
[2026-01-10 01:59:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 01:59:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 01:59:40] Further information can be found at the LHC@home message board.
[2026-01-10 01:59:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 01:59:40] Checking for apptainer binary...
[2026-01-10 01:59:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 01:59:40] Running /usr/bin/apptainer --version
[2026-01-10 01:59:40] apptainer version 1.4.1-1.1
[2026-01-10 01:59:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 01:59:40] magicA250a
[2026-01-10 01:59:40] apptainer works
[2026-01-10 01:59:40] Set ATHENA_PROC_NUMBER=3
[2026-01-10 01:59:40] Set ATHENA_CORE_NUMBER=3
[2026-01-10 01:59:40] Starting ATLAS job with PandaID=6963167472
[2026-01-10 01:59:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:55:57]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | job 6963167472 has completed (purged errors)
[2026-01-10 03:55:57] 2026-01-10 02:55:10,074 | INFO     | overall cleanup function is called
[2026-01-10 03:55:57] 2026-01-10 02:55:11,081 | INFO     | --- collectZombieJob: --- 10, [2764747]
[2026-01-10 03:55:57] 2026-01-10 02:55:11,081 | INFO     | zombie collector waiting for pid 2764747
[2026-01-10 03:55:57] 2026-01-10 02:55:11,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 03:55:57] 2026-01-10 02:55:11,081 | INFO     | collected zombie processes
[2026-01-10 03:55:57] 2026-01-10 02:55:11,081 | INFO     | will attempt to kill all subprocesses of pid=2764747
[2026-01-10 03:55:57] 2026-01-10 02:55:11,124 | INFO     | process IDs to be killed: [2764747] (in reverse order)
[2026-01-10 03:55:57] 2026-01-10 02:55:11,147 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 03:55:57] 2026-01-10 02:55:11,148 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 03:55:57] 2026-01-10 02:55:11,149 | INFO     | did not find any defunct processes belonging to 2764747
[2026-01-10 03:55:57] 2026-01-10 02:55:11,150 | INFO     | did not find any defunct processes belonging to 2764747
[2026-01-10 03:55:57] 2026-01-10 02:55:11,150 | INFO     | ready for new job
[2026-01-10 03:55:57] 2026-01-10 02:55:11,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 03:55:57] 2026-01-10 02:55:11,151 | INFO     | ***************************************
[2026-01-10 03:55:57] 2026-01-10 02:55:11,151 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:55:57] 2026-01-10 02:55:11,151 | INFO     | ***************************************
[2026-01-10 03:55:57] 2026-01-10 02:55:11,151 | INFO     | 
[2026-01-10 03:55:57] 2026-01-10 02:55:11,151 | INFO     | architecture information:
[2026-01-10 03:55:57] 2026-01-10 02:55:11,151 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:55:57] 2026-01-10 02:55:11,160 | INFO     | cat /etc/os-release:
[2026-01-10 03:55:57] NAME="CentOS Linux"
[2026-01-10 03:55:57] VERSION="7 (Core)"
[2026-01-10 03:55:57] ID="centos"
[2026-01-10 03:55:57] ID_LIKE="rhel fedora"
[2026-01-10 03:55:57] VERSION_ID="7"
[2026-01-10 03:55:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:55:57] ANSI_COLOR="0;31"
[2026-01-10 03:55:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:55:57] HOME_URL="https://www.centos.org/"
[2026-01-10 03:55:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:55:57] 
[2026-01-10 03:55:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:55:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:55:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:55:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:55:57] 
[2026-01-10 03:55:57] 2026-01-10 02:55:11,160 | INFO     | ***************************************
[2026-01-10 03:55:57] 2026-01-10 02:55:11,663 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 03:55:57] 2026-01-10 02:55:11,675 | INFO     | sufficient remaining disk space (326268616704 B)
[2026-01-10 03:55:57] 2026-01-10 02:55:11,676 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:55:57] 2026-01-10 02:55:11,676 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:55:57] 2026-01-10 02:55:11,676 | INFO     | update_server=False
[2026-01-10 03:55:57] 2026-01-10 02:55:11,676 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:55:57] 2026-01-10 02:55:11,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:55:57] 2026-01-10 02:55:11,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:55:57] 2026-01-10 02:55:11,821 | INFO     | all data control threads have been joined
[2026-01-10 03:55:57] 2026-01-10 02:55:11,824 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 03:55:57] 2026-01-10 02:55:11,824 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 03:55:57] 2026-01-10 02:55:11,824 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:55:57] 2026-01-10 02:55:11,824 | INFO     | will abort loop
[2026-01-10 03:55:57] 2026-01-10 02:55:12,614 | INFO     | all payload control threads have been joined
[2026-01-10 03:55:57] 2026-01-10 02:55:12,681 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:12,682 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:12,715 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:12,827 | INFO     | [data] control thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:12,828 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:12,900 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:12,957 | INFO     | all job control threads have been joined
[2026-01-10 03:55:57] 2026-01-10 02:55:13,530 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:13,569 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:13,620 | INFO     | [payload] control thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:13,646 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:13,682 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:13,963 | INFO     | [job] control thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:14,135 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:14,171 | INFO     | [job] validate thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:15,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:55:57] 2026-01-10 02:55:19,147 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:22,452 | INFO     | job.realtimelogging is not enabled
[2026-01-10 03:55:57] 2026-01-10 02:55:23,458 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:55:57] 2026-01-10 02:55:42,052 | INFO     | PID=2758280 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 03:55:57] 2026-01-10 02:55:42,053 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:55:57] 2026-01-10 02:55:42,053 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:55:57] 2026-01-10 02:55:42,053 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:55:57] 2026-01-10 02:55:52,695 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:55:57] 2026-01-10 02:55:52,758 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741673588544)>', '<ExcThread(monitor, started 139741173372672)>']
[2026-01-10 03:55:57] 2026-01-10 02:55:53,110 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:55:57] 2026-01-10 02:55:53,111 | INFO     | [monitor] control thread has ended
[2026-01-10 03:55:57] 2026-01-10 02:55:57,780 | INFO     | all workflow threads have been joined
[2026-01-10 03:55:57] 2026-01-10 02:55:57,781 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:55:57] 2026-01-10 02:55:57,782 | INFO     | traces error code: 0
[2026-01-10 03:55:57] 2026-01-10 02:55:57,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:55:57] 2026-01-10 02:55:57,831 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:55:57] 2026-01-10 02:55:57,833 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:55:57] 2026-01-10 02:55:57,835 [wrapper] pilotpid: 2758280
[2026-01-10 03:55:57] 2026-01-10 02:55:57,837 [wrapper] Pilot exit status: 0
[2026-01-10 03:55:57] 2026-01-10 02:55:57,845 [wrapper] pandaids: 6963167472
[2026-01-10 03:55:57] 2026-01-10 02:55:57,860 [wrapper] cleanup supervisor_pilot 2779519 2758281
[2026-01-10 03:55:57] 2026-01-10 02:55:57,863 [wrapper] Test setup, not cleaning
[2026-01-10 03:55:57] 2026-01-10 02:55:57,865 [wrapper] apfmon messages muted
[2026-01-10 03:55:57] 2026-01-10 02:55:57,868 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:55:57] 2026-01-10 02:55:57,870 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:55:57]  *** Error codes and diagnostics ***
[2026-01-10 03:55:57]     "exeErrorCode": 0,
[2026-01-10 03:55:57]     "exeErrorDiag": "",
[2026-01-10 03:55:57]     "pilotErrorCode": 0,
[2026-01-10 03:55:57]     "pilotErrorDiag": "",
[2026-01-10 03:55:57]  *** Listing of results directory ***
[2026-01-10 03:55:57] total 441676
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 03:55:57] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc       100 Jan 10 01:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:55:57] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 01:59 run_atlas
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc       105 Jan 10 01:59 job.xml
[2026-01-10 03:55:57] -rw-r--r-- 2 boinc boinc 227600366 Jan 10 01:59 EVNT.47898824._001384.pool.root.1
[2026-01-10 03:55:57] -rw-r--r-- 2 boinc boinc    592398 Jan 10 01:59 input.tar.gz
[2026-01-10 03:55:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 01:59 start_atlas.sh
[2026-01-10 03:55:57] drwxrwx--x 2 boinc boinc      4096 Jan 10 01:59 shared
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 01:59 boinc_setup_complete
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc      6442 Jan 10 01:59 init_data.xml
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 01:59 boinc_lockfile
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc      2519 Jan 10 01:59 pandaJob.out
[2026-01-10 03:55:57] -rw------- 1 boinc boinc    989374 Jan 10 01:59 agis_schedconf.cvmfs.json
[2026-01-10 03:55:57] -rw------- 1 boinc boinc   1516240 Jan 10 01:59 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:55:57] drwx------ 5 boinc boinc      4096 Jan 10 01:59 pilot3
[2026-01-10 03:55:57] -rw------- 1 boinc boinc 218206304 Jan 10 03:54 HITS.47898826._035713.pool.root.1
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc       529 Jan 10 03:54 boinc_task_state.xml
[2026-01-10 03:55:57] -rw------- 1 boinc boinc      1021 Jan 10 03:54 memory_monitor_summary.json
[2026-01-10 03:55:57] -rw------- 1 boinc boinc    285651 Jan 10 03:55 log.47898826._035713.job.log.tgz.1
[2026-01-10 03:55:57] -rw------- 1 boinc boinc      7768 Jan 10 03:55 heartbeat.json
[2026-01-10 03:55:57] -rw------- 1 boinc boinc        95 Jan 10 03:55 pilot_heartbeat.json
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc        27 Jan 10 03:55 wrapper_checkpoint.txt
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc      8192 Jan 10 03:55 boinc_mmap_file
[2026-01-10 03:55:57] -rw------- 1 boinc boinc      5010 Jan 10 03:55 pilotlog.txt
[2026-01-10 03:55:57] -rw------- 1 boinc boinc    998542 Jan 10 03:55 log.47898826._035713.job.log.1
[2026-01-10 03:55:57] -rw------- 1 boinc boinc       357 Jan 10 03:55 output.list
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc       620 Jan 10 03:55 runtime_log
[2026-01-10 03:55:57] -rw------- 1 boinc boinc   1300480 Jan 10 03:55 result.tar.gz
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc      8917 Jan 10 03:55 runtime_log.err
[2026-01-10 03:55:57] -rw------- 1 boinc boinc       663 Jan 10 03:55 bUJODmnzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGqlKDmufoxEn.diag
[2026-01-10 03:55:57] -rw-r--r-- 1 boinc boinc     11849 Jan 10 03:55 stderr.txt
[2026-01-10 03:55:57] HITS file was successfully produced:
[2026-01-10 03:55:57] -rw------- 1 boinc boinc 218206304 Jan 10 03:54 shared/HITS.pool.root.1
[2026-01-10 03:55:57]  *** Contents of shared directory: ***
[2026-01-10 03:55:57] total 437240
[2026-01-10 03:55:57] -rw-r--r-- 2 boinc boinc 227600366 Jan 10 01:59 ATLAS.root_0
[2026-01-10 03:55:57] -rw-r--r-- 2 boinc boinc    592398 Jan 10 01:59 input.tar.gz
[2026-01-10 03:55:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 01:59 start_atlas.sh
[2026-01-10 03:55:57] -rw------- 1 boinc boinc 218206304 Jan 10 03:54 HITS.pool.root.1
[2026-01-10 03:55:57] -rw------- 1 boinc boinc   1300480 Jan 10 03:55 result.tar.gz
03:55:59 (2754562): run_atlas exited; CPU time 20088.957040
03:55:59 (2754562): called boinc_finish(0)

</stderr_txt>
]]>

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