Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:05:00 (2727111): wrapper (7.7.26015): starting
00:05:00 (2727111): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 00:05:00] Arguments: --nthreads 3
[2026-01-10 00:05:00] Threads: 3
[2026-01-10 00:05:00] Checking for CVMFS
[2026-01-10 00:05:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:05:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:05:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:05:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:05:00] 2.9.2.0 2006203 3008 79848 154959 1 57 33888700 36864001 0 130560 0 1861823 99.987 115405 5798 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 00:05:00] CVMFS is ok
[2026-01-10 00:05:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:05:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:05:00] Further information can be found at the LHC@home message board.
[2026-01-10 00:05:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:05:00] Checking for apptainer binary...
[2026-01-10 00:05:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:05:00] Running /usr/bin/apptainer --version
[2026-01-10 00:05:00] apptainer version 1.4.1-1.1
[2026-01-10 00:05:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:05:00] magicA250a
[2026-01-10 00:05:00] apptainer works
[2026-01-10 00:05:00] Set ATHENA_PROC_NUMBER=3
[2026-01-10 00:05:00] Set ATHENA_CORE_NUMBER=3
[2026-01-10 00:05:00] Starting ATLAS job with PandaID=6963166965
[2026-01-10 00:05:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 01:59:18]  *** The last 200 lines of the pilot log: ***
[2026-01-10 01:59:18] 2026-01-10 00:58:22,536 | INFO     | will attempt to kill all subprocesses of pid=2737284
[2026-01-10 01:59:18] 2026-01-10 00:58:22,578 | INFO     | process IDs to be killed: [2737284] (in reverse order)
[2026-01-10 01:59:18] 2026-01-10 00:58:22,602 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 01:59:18] 2026-01-10 00:58:22,602 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 01:59:18] 2026-01-10 00:58:22,603 | INFO     | did not find any defunct processes belonging to 2737284
[2026-01-10 01:59:18] 2026-01-10 00:58:22,604 | INFO     | did not find any defunct processes belonging to 2737284
[2026-01-10 01:59:18] 2026-01-10 00:58:22,604 | INFO     | ready for new job
[2026-01-10 01:59:18] 2026-01-10 00:58:22,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 01:59:18] 2026-01-10 00:58:22,605 | INFO     | ***************************************
[2026-01-10 01:59:18] 2026-01-10 00:58:22,605 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 01:59:18] 2026-01-10 00:58:22,605 | INFO     | ***************************************
[2026-01-10 01:59:18] 2026-01-10 00:58:22,605 | INFO     | 
[2026-01-10 01:59:18] 2026-01-10 00:58:22,605 | INFO     | architecture information:
[2026-01-10 01:59:18] 2026-01-10 00:58:22,606 | INFO     | executing command: cat /etc/os-release
[2026-01-10 01:59:18] 2026-01-10 00:58:22,614 | INFO     | cat /etc/os-release:
[2026-01-10 01:59:18] NAME="CentOS Linux"
[2026-01-10 01:59:18] VERSION="7 (Core)"
[2026-01-10 01:59:18] ID="centos"
[2026-01-10 01:59:18] ID_LIKE="rhel fedora"
[2026-01-10 01:59:18] VERSION_ID="7"
[2026-01-10 01:59:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 01:59:18] ANSI_COLOR="0;31"
[2026-01-10 01:59:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 01:59:18] HOME_URL="https://www.centos.org/"
[2026-01-10 01:59:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 01:59:18] 
[2026-01-10 01:59:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 01:59:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 01:59:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 01:59:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 01:59:18] 
[2026-01-10 01:59:18] 2026-01-10 00:58:22,614 | INFO     | ***************************************
[2026-01-10 01:59:18] 2026-01-10 00:58:23,117 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 01:59:18] 2026-01-10 00:58:23,129 | INFO     | sufficient remaining disk space (326056804352 B)
[2026-01-10 01:59:18] 2026-01-10 00:58:23,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 01:59:18] 2026-01-10 00:58:23,130 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 01:59:18] 2026-01-10 00:58:23,130 | INFO     | update_server=False
[2026-01-10 01:59:18] 2026-01-10 00:58:23,130 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 01:59:18] 2026-01-10 00:58:23,130 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:59:18] 2026-01-10 00:58:23,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 01:59:18] 2026-01-10 00:58:23,605 | INFO     | all payload control threads have been joined
[2026-01-10 01:59:18] 2026-01-10 00:58:23,705 | INFO     | all job control threads have been joined
[2026-01-10 01:59:18] 2026-01-10 00:58:23,992 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:59:18] 2026-01-10 00:58:23,992 | INFO     | aborting loop
[2026-01-10 01:59:18] 2026-01-10 00:58:24,135 | INFO     | [job] retrieve thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,136 | INFO     | [job] queue monitor thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,178 | INFO     | [job] validate thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,182 | INFO     | all data control threads have been joined
[2026-01-10 01:59:18] 2026-01-10 00:58:24,524 | INFO     | [data] copytool_in thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,569 | INFO     | [payload] validate_post thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,582 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,610 | INFO     | [payload] control thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 01:59:18] 2026-01-10 00:58:24,711 | INFO     | [job] control thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:24,994 | INFO     | [job] job monitor thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:25,136 | INFO     | [data] copytool_out thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:25,188 | INFO     | [data] control thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:25,250 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:25,250 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:25,355 | INFO     | [payload] failed_post thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:28,633 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:33,172 | INFO     | job.realtimelogging is not enabled
[2026-01-10 01:59:18] 2026-01-10 00:58:34,178 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 01:59:18] 2026-01-10 00:58:53,167 | INFO     | PID=2730831 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 01:59:18] 2026-01-10 00:58:53,168 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 01:59:18] 2026-01-10 00:58:53,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 01:59:18] 2026-01-10 00:58:53,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 01:59:18] 2026-01-10 00:59:13,158 | INFO     | [monitor] cgroup control has ended
[2026-01-10 01:59:18] 2026-01-10 00:59:13,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006709655360)>', '<ExcThread(monitor, started 140005867517696)>']
[2026-01-10 01:59:18] 2026-01-10 00:59:14,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 01:59:18] 2026-01-10 00:59:14,277 | INFO     | [monitor] control thread has ended
[2026-01-10 01:59:18] 2026-01-10 00:59:18,503 | INFO     | all workflow threads have been joined
[2026-01-10 01:59:18] 2026-01-10 00:59:18,504 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 01:59:18] 2026-01-10 00:59:18,504 | INFO     | traces error code: 0
[2026-01-10 01:59:18] 2026-01-10 00:59:18,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 01:59:18] 2026-01-10 00:59:18,553 [wrapper] ==== pilot stdout END ====
[2026-01-10 01:59:18] 2026-01-10 00:59:18,555 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 01:59:18] 2026-01-10 00:59:18,558 [wrapper] pilotpid: 2730831
[2026-01-10 01:59:18] 2026-01-10 00:59:18,560 [wrapper] Pilot exit status: 0
[2026-01-10 01:59:18] 2026-01-10 00:59:18,567 [wrapper] pandaids: 6963166965
[2026-01-10 01:59:18] 2026-01-10 00:59:18,583 [wrapper] cleanup supervisor_pilot 2752001 2730832
[2026-01-10 01:59:18] 2026-01-10 00:59:18,586 [wrapper] Test setup, not cleaning
[2026-01-10 01:59:18] 2026-01-10 00:59:18,588 [wrapper] apfmon messages muted
[2026-01-10 01:59:18] 2026-01-10 00:59:18,590 [wrapper] ==== wrapper stdout END ====
[2026-01-10 01:59:18] 2026-01-10 00:59:18,593 [wrapper] ==== wrapper stderr END ====
[2026-01-10 01:59:18]  *** Error codes and diagnostics ***
[2026-01-10 01:59:18]     "exeErrorCode": 0,
[2026-01-10 01:59:18]     "exeErrorDiag": "",
[2026-01-10 01:59:18]     "pilotErrorCode": 0,
[2026-01-10 01:59:18]     "pilotErrorDiag": "",
[2026-01-10 01:59:18]  *** Listing of results directory ***
[2026-01-10 01:59:18] total 442200
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 01:59:18] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 01:59:18] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:05 run_atlas
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:05 job.xml
[2026-01-10 01:59:18] -rw-r--r-- 2 boinc boinc 223561063 Jan 10 00:05 EVNT.47898824._001370.pool.root.1
[2026-01-10 01:59:18] -rw-r--r-- 2 boinc boinc    592394 Jan 10 00:05 input.tar.gz
[2026-01-10 01:59:18] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:05 start_atlas.sh
[2026-01-10 01:59:18] drwxrwx--x 2 boinc boinc      4096 Jan 10 00:05 shared
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:05 boinc_setup_complete
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc      6442 Jan 10 00:05 init_data.xml
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:05 boinc_lockfile
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc      2520 Jan 10 00:05 pandaJob.out
[2026-01-10 01:59:18] -rw------- 1 boinc boinc    989375 Jan 10 00:05 agis_schedconf.cvmfs.json
[2026-01-10 01:59:18] -rw------- 1 boinc boinc   1516240 Jan 10 00:05 agis_ddmendpoints.agis.ALL.json
[2026-01-10 01:59:18] drwx------ 5 boinc boinc      4096 Jan 10 00:05 pilot3
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc       530 Jan 10 01:57 boinc_task_state.xml
[2026-01-10 01:59:18] -rw------- 1 boinc boinc 222805619 Jan 10 01:57 HITS.47898826._035371.pool.root.1
[2026-01-10 01:59:18] -rw------- 1 boinc boinc      1021 Jan 10 01:58 memory_monitor_summary.json
[2026-01-10 01:59:18] -rw------- 1 boinc boinc    291760 Jan 10 01:58 log.47898826._035371.job.log.tgz.1
[2026-01-10 01:59:18] -rw------- 1 boinc boinc      7765 Jan 10 01:58 heartbeat.json
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc      8192 Jan 10 01:58 boinc_mmap_file
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc        27 Jan 10 01:58 wrapper_checkpoint.txt
[2026-01-10 01:59:18] -rw------- 1 boinc boinc        95 Jan 10 01:58 pilot_heartbeat.json
[2026-01-10 01:59:18] -rw------- 1 boinc boinc      4824 Jan 10 01:59 pilotlog.txt
[2026-01-10 01:59:18] -rw------- 1 boinc boinc    983169 Jan 10 01:59 log.47898826._035371.job.log.1
[2026-01-10 01:59:18] -rw------- 1 boinc boinc       357 Jan 10 01:59 output.list
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc       620 Jan 10 01:59 runtime_log
[2026-01-10 01:59:18] -rw------- 1 boinc boinc   1290240 Jan 10 01:59 result.tar.gz
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc      8917 Jan 10 01:59 runtime_log.err
[2026-01-10 01:59:18] -rw------- 1 boinc boinc       663 Jan 10 01:59 0NyMDmbzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmenlKDmxIVBVm.diag
[2026-01-10 01:59:18] -rw-r--r-- 1 boinc boinc     10294 Jan 10 01:59 stderr.txt
[2026-01-10 01:59:18] HITS file was successfully produced:
[2026-01-10 01:59:18] -rw------- 1 boinc boinc 222805619 Jan 10 01:57 shared/HITS.pool.root.1
[2026-01-10 01:59:18]  *** Contents of shared directory: ***
[2026-01-10 01:59:18] total 437768
[2026-01-10 01:59:18] -rw-r--r-- 2 boinc boinc 223561063 Jan 10 00:05 ATLAS.root_0
[2026-01-10 01:59:18] -rw-r--r-- 2 boinc boinc    592394 Jan 10 00:05 input.tar.gz
[2026-01-10 01:59:18] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:05 start_atlas.sh
[2026-01-10 01:59:18] -rw------- 1 boinc boinc 222805619 Jan 10 01:57 HITS.pool.root.1
[2026-01-10 01:59:18] -rw------- 1 boinc boinc   1290240 Jan 10 01:59 result.tar.gz
01:59:20 (2727111): run_atlas exited; CPU time 19678.462704
01:59:20 (2727111): called boinc_finish(0)

</stderr_txt>
]]>

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