Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:15:54 (1522492): wrapper (7.7.26015): starting
23:15:54 (1522492): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 23:15:54] Arguments: --nthreads 4
[2026-01-09 23:15:54] Threads: 4
[2026-01-09 23:15:54] Checking for CVMFS
[2026-01-09 23:15:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:15:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:15:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:15:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:15:54] 2.9.2.0 569242 3259 93400 154959 3 9 21143307 36864001 0 130560 0 2517828 99.990 123558 6477 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 23:15:54] CVMFS is ok
[2026-01-09 23:15:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:15:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:15:54] Further information can be found at the LHC@home message board.
[2026-01-09 23:15:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:15:54] Checking for apptainer binary...
[2026-01-09 23:15:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:15:54] Running /usr/bin/apptainer --version
[2026-01-09 23:15:54] apptainer version 1.4.1-1.1
[2026-01-09 23:15:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:15:54] thA369a
[2026-01-09 23:15:54] apptainer works
[2026-01-09 23:15:54] Set ATHENA_PROC_NUMBER=4
[2026-01-09 23:15:54] Set ATHENA_CORE_NUMBER=4
[2026-01-09 23:15:54] Starting ATLAS job with PandaID=6963166771
[2026-01-09 23:15:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 00:42:18]  *** The last 200 lines of the pilot log: ***
[2026-01-10 00:42:18] 2026-01-09 23:41:45,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 00:42:18] 2026-01-09 23:41:45,644 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 00:42:18] 2026-01-09 23:41:45,644 | INFO     | job 6963166771 has completed (purged errors)
[2026-01-10 00:42:18] 2026-01-09 23:41:45,644 | INFO     | overall cleanup function is called
[2026-01-10 00:42:18] 2026-01-09 23:41:46,650 | INFO     | --- collectZombieJob: --- 10, [1532811]
[2026-01-10 00:42:18] 2026-01-09 23:41:46,651 | INFO     | zombie collector waiting for pid 1532811
[2026-01-10 00:42:18] 2026-01-09 23:41:46,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 00:42:18] 2026-01-09 23:41:46,651 | INFO     | collected zombie processes
[2026-01-10 00:42:18] 2026-01-09 23:41:46,651 | INFO     | will attempt to kill all subprocesses of pid=1532811
[2026-01-10 00:42:18] 2026-01-09 23:41:46,695 | INFO     | process IDs to be killed: [1532811] (in reverse order)
[2026-01-10 00:42:18] 2026-01-09 23:41:46,720 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 00:42:18] 2026-01-09 23:41:46,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 00:42:18] 2026-01-09 23:41:46,721 | INFO     | did not find any defunct processes belonging to 1532811
[2026-01-10 00:42:18] 2026-01-09 23:41:46,723 | INFO     | did not find any defunct processes belonging to 1532811
[2026-01-10 00:42:18] 2026-01-09 23:41:46,723 | INFO     | ready for new job
[2026-01-10 00:42:18] 2026-01-09 23:41:46,723 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 00:42:18] 2026-01-09 23:41:46,723 | INFO     | ***************************************
[2026-01-10 00:42:18] 2026-01-09 23:41:46,723 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 00:42:18] 2026-01-09 23:41:46,723 | INFO     | ***************************************
[2026-01-10 00:42:18] 2026-01-09 23:41:46,723 | INFO     | 
[2026-01-10 00:42:18] 2026-01-09 23:41:46,724 | INFO     | architecture information:
[2026-01-10 00:42:18] 2026-01-09 23:41:46,724 | INFO     | executing command: cat /etc/os-release
[2026-01-10 00:42:18] 2026-01-09 23:41:46,733 | INFO     | cat /etc/os-release:
[2026-01-10 00:42:18] NAME="CentOS Linux"
[2026-01-10 00:42:18] VERSION="7 (Core)"
[2026-01-10 00:42:18] ID="centos"
[2026-01-10 00:42:18] ID_LIKE="rhel fedora"
[2026-01-10 00:42:18] VERSION_ID="7"
[2026-01-10 00:42:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 00:42:18] ANSI_COLOR="0;31"
[2026-01-10 00:42:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 00:42:18] HOME_URL="https://www.centos.org/"
[2026-01-10 00:42:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 00:42:18] 
[2026-01-10 00:42:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 00:42:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 00:42:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 00:42:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 00:42:18] 
[2026-01-10 00:42:18] 2026-01-09 23:41:46,733 | INFO     | ***************************************
[2026-01-10 00:42:18] 2026-01-09 23:41:47,236 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 00:42:18] 2026-01-09 23:41:47,249 | INFO     | sufficient remaining disk space (238974664704 B)
[2026-01-10 00:42:18] 2026-01-09 23:41:47,249 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 00:42:18] 2026-01-09 23:41:47,249 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 00:42:18] 2026-01-09 23:41:47,249 | INFO     | update_server=False
[2026-01-10 00:42:18] 2026-01-09 23:41:47,249 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 00:42:18] 2026-01-09 23:41:47,249 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:42:18] 2026-01-09 23:41:47,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 00:42:18] 2026-01-09 23:41:47,495 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:42:18] 2026-01-09 23:41:47,495 | INFO     | aborting loop
[2026-01-10 00:42:18] 2026-01-09 23:41:47,625 | INFO     | all data control threads have been joined
[2026-01-10 00:42:18] 2026-01-09 23:41:47,833 | INFO     | all job control threads have been joined
[2026-01-10 00:42:18] 2026-01-09 23:41:48,167 | INFO     | all payload control threads have been joined
[2026-01-10 00:42:18] 2026-01-09 23:41:48,255 | INFO     | [job] retrieve thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:48,255 | INFO     | [job] queue monitor thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:48,501 | INFO     | [job] job monitor thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:48,525 | INFO     | [payload] validate_post thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:48,631 | INFO     | [data] control thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:48,674 | INFO     | [payload] failed_post thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:48,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 00:42:18] 2026-01-09 23:41:48,836 | INFO     | [job] control thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:49,038 | INFO     | [data] copytool_in thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:49,172 | INFO     | [payload] control thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:49,396 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:49,535 | INFO     | [job] validate thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:49,578 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:49,578 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:50,737 | INFO     | [data] copytool_out thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:51,256 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:41:57,596 | INFO     | job.realtimelogging is not enabled
[2026-01-10 00:42:18] 2026-01-09 23:41:58,602 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 00:42:18] 2026-01-09 23:42:07,836 | INFO     | [monitor] cgroup control has ended
[2026-01-10 00:42:18] 2026-01-09 23:42:09,948 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140406684043072)>', '<ExcThread(monitor, started 140406331254528)>']
[2026-01-10 00:42:18] 2026-01-09 23:42:14,972 | INFO     | all workflow threads have been joined
[2026-01-10 00:42:18] 2026-01-09 23:42:14,972 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 00:42:18] 2026-01-09 23:42:14,973 | INFO     | traces error code: 0
[2026-01-10 00:42:18] 2026-01-09 23:42:14,973 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 00:42:18] 2026-01-09 23:42:18,048 | INFO     | PID=1526267 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 00:42:18] 2026-01-09 23:42:18,049 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 00:42:18] 2026-01-09 23:42:18,049 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 00:42:18] 2026-01-09 23:42:18,049 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 00:42:18] 2026-01-09 23:42:18,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 00:42:18] 2026-01-09 23:42:18,049 | INFO     | [monitor] control thread has ended
[2026-01-10 00:42:18] 2026-01-09 23:42:18,098 [wrapper] ==== pilot stdout END ====
[2026-01-10 00:42:18] 2026-01-09 23:42:18,101 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 00:42:18] 2026-01-09 23:42:18,103 [wrapper] pilotpid: 1526267
[2026-01-10 00:42:18] 2026-01-09 23:42:18,106 [wrapper] Pilot exit status: 0
[2026-01-10 00:42:18] 2026-01-09 23:42:18,113 [wrapper] pandaids: 6963166771
[2026-01-10 00:42:18] 2026-01-09 23:42:18,129 [wrapper] cleanup supervisor_pilot 1544922 1526268
[2026-01-10 00:42:18] 2026-01-09 23:42:18,132 [wrapper] Test setup, not cleaning
[2026-01-10 00:42:18] 2026-01-09 23:42:18,134 [wrapper] apfmon messages muted
[2026-01-10 00:42:18] 2026-01-09 23:42:18,136 [wrapper] ==== wrapper stdout END ====
[2026-01-10 00:42:18] 2026-01-09 23:42:18,139 [wrapper] ==== wrapper stderr END ====
[2026-01-10 00:42:18]  *** Error codes and diagnostics ***
[2026-01-10 00:42:18]     "exeErrorCode": 0,
[2026-01-10 00:42:18]     "exeErrorDiag": "",
[2026-01-10 00:42:18]     "pilotErrorCode": 0,
[2026-01-10 00:42:18]     "pilotErrorDiag": "",
[2026-01-10 00:42:18]  *** Listing of results directory ***
[2026-01-10 00:42:18] total 445252
[2026-01-10 00:42:18] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc       100 Jan  9 23:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 00:42:18] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 23:15 run_atlas
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc       105 Jan  9 23:15 job.xml
[2026-01-10 00:42:18] -rw-r--r-- 2 boinc boinc 229496575 Jan  9 23:15 EVNT.47898824._001363.pool.root.1
[2026-01-10 00:42:18] -rw-r--r-- 2 boinc boinc    592396 Jan  9 23:15 input.tar.gz
[2026-01-10 00:42:18] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:15 start_atlas.sh
[2026-01-10 00:42:18] drwxrwx--x 2 boinc boinc      4096 Jan  9 23:15 shared
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:15 boinc_setup_complete
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc      6443 Jan  9 23:15 init_data.xml
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:15 boinc_lockfile
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc      2520 Jan  9 23:15 pandaJob.out
[2026-01-10 00:42:18] -rw------- 1 boinc boinc    989375 Jan  9 23:15 agis_schedconf.cvmfs.json
[2026-01-10 00:42:18] -rw------- 1 boinc boinc   1516240 Jan  9 23:15 agis_ddmendpoints.agis.ALL.json
[2026-01-10 00:42:18] drwx------ 5 boinc boinc      4096 Jan  9 23:16 pilot3
[2026-01-10 00:42:18] -rw------- 1 boinc boinc 220513580 Jan 10 00:41 HITS.47898826._035177.pool.root.1
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc       530 Jan 10 00:41 boinc_task_state.xml
[2026-01-10 00:42:18] -rw------- 1 boinc boinc        95 Jan 10 00:41 pilot_heartbeat.json
[2026-01-10 00:42:18] -rw------- 1 boinc boinc      1013 Jan 10 00:41 memory_monitor_summary.json
[2026-01-10 00:42:18] -rw------- 1 boinc boinc    261132 Jan 10 00:41 log.47898826._035177.job.log.tgz.1
[2026-01-10 00:42:18] -rw------- 1 boinc boinc      7749 Jan 10 00:41 heartbeat.json
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc      8192 Jan 10 00:42 boinc_mmap_file
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc        27 Jan 10 00:42 wrapper_checkpoint.txt
[2026-01-10 00:42:18] -rw------- 1 boinc boinc       747 Jan 10 00:42 pilotlog.txt
[2026-01-10 00:42:18] -rw------- 1 boinc boinc    753348 Jan 10 00:42 log.47898826._035177.job.log.1
[2026-01-10 00:42:18] -rw------- 1 boinc boinc       357 Jan 10 00:42 output.list
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc       620 Jan 10 00:42 runtime_log
[2026-01-10 00:42:18] -rw------- 1 boinc boinc   1034240 Jan 10 00:42 result.tar.gz
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc      8902 Jan 10 00:42 runtime_log.err
[2026-01-10 00:42:18] -rw------- 1 boinc boinc       659 Jan 10 00:42 cQfKDmQzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0mlKDm3GKJCn.diag
[2026-01-10 00:42:18] -rw-r--r-- 1 boinc boinc     11109 Jan 10 00:42 stderr.txt
[2026-01-10 00:42:18] HITS file was successfully produced:
[2026-01-10 00:42:18] -rw------- 1 boinc boinc 220513580 Jan 10 00:41 shared/HITS.pool.root.1
[2026-01-10 00:42:18]  *** Contents of shared directory: ***
[2026-01-10 00:42:18] total 441084
[2026-01-10 00:42:18] -rw-r--r-- 2 boinc boinc 229496575 Jan  9 23:15 ATLAS.root_0
[2026-01-10 00:42:18] -rw-r--r-- 2 boinc boinc    592396 Jan  9 23:15 input.tar.gz
[2026-01-10 00:42:18] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:15 start_atlas.sh
[2026-01-10 00:42:18] -rw------- 1 boinc boinc 220513580 Jan 10 00:41 HITS.pool.root.1
[2026-01-10 00:42:18] -rw------- 1 boinc boinc   1034240 Jan 10 00:42 result.tar.gz
00:42:19 (1522492): run_atlas exited; CPU time 19617.610411
00:42:19 (1522492): called boinc_finish(0)

</stderr_txt>
]]>

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