Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
12:06:38 (308644): wrapper (7.7.26015): starting
12:06:38 (308644): wrapper: running run_atlas (--nthreads 3)
[2026-01-11 12:06:38] Arguments: --nthreads 3
[2026-01-11 12:06:38] Threads: 3
[2026-01-11 12:06:38] Checking for CVMFS
[2026-01-11 12:06:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 12:06:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 12:06:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 12:06:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 12:06:38] 2.12.7.0 3060303 5491 59020 155013 1 57 4141121 6144001 2751 130560 0 10840085 99.9794 280219 165 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2026-01-11 12:06:38] CVMFS is ok
[2026-01-11 12:06:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 12:06:38] Checking for apptainer binary...
[2026-01-11 12:06:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 12:06:38] Running /usr/bin/apptainer --version
[2026-01-11 12:06:38] apptainer version 1.4.5
[2026-01-11 12:06:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 12:06:39] Ryzen5
[2026-01-11 12:06:39] apptainer works
[2026-01-11 12:06:39] Set ATHENA_PROC_NUMBER=3
[2026-01-11 12:06:39] Set ATHENA_CORE_NUMBER=3
[2026-01-11 12:06:39] Starting ATLAS job with PandaID=6963163223
[2026-01-11 12:06:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 15:16:10]  *** The last 200 lines of the pilot log: ***
[2026-01-11 15:16:10] 2026-01-11 14:15:31,850 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3931.6191875
[2026-01-11 15:16:10] 2026-01-11 14:15:31,852 | INFO     | using path: /var/lib/boinc/boinc/slots/1/PanDA_Pilot-6963163223/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 15:16:10] 2026-01-11 14:15:31,852 | INFO     | extracted standard info from prmon json
[2026-01-11 15:16:10] 2026-01-11 14:15:31,852 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 15:16:10] 2026-01-11 14:15:31,852 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 15:16:10] 2026-01-11 14:15:31,853 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 15:16:10] 2026-01-11 14:15:31,853 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 15:16:10] 2026-01-11 14:15:31,855 | INFO     | fitting pss+swap vs Time
[2026-01-11 15:16:10] 2026-01-11 14:15:31,855 | INFO     | sum of square deviations: 1995283922.5
[2026-01-11 15:16:10] 2026-01-11 14:15:31,856 | INFO     | sum of deviations: 7764710526.499998
[2026-01-11 15:16:10] 2026-01-11 14:15:31,856 | INFO     | mean x: 1768135268.5
[2026-01-11 15:16:10] 2026-01-11 14:15:31,856 | INFO     | mean y: 2291406.801075269
[2026-01-11 15:16:10] 2026-01-11 14:15:31,856 | INFO     | intersect: -6878462944.387183
[2026-01-11 15:16:10] 2026-01-11 14:15:31,856 | INFO     | chi2: 1.820011057830528
[2026-01-11 15:16:10] 2026-01-11 14:15:31,856 | INFO     | sum of square deviations: 1838657730.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,857 | INFO     | sum of deviations: 18729190327.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,857 | INFO     | mean x: 1768135116.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,857 | INFO     | mean y: 2301841.872928177
[2026-01-11 15:16:10] 2026-01-11 14:15:31,857 | INFO     | intersect: -18008521255.374332
[2026-01-11 15:16:10] 2026-01-11 14:15:31,858 | INFO     | chi2: 1.0477433901786743
[2026-01-11 15:16:10] 2026-01-11 14:15:31,858 | INFO     | current chi2=1.0477433901786743 (change=42.43203162580807 %)
[2026-01-11 15:16:10] 2026-01-11 14:15:31,858 | INFO     | sum of square deviations: 1690450300.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | sum of deviations: 18146603605.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | mean x: 1768134963.5
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | mean y: 2301242.25
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | intersect: -18978229745.721455
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | chi2: 1.0483118743887965
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | current chi2=1.0483118743887965 (change=-0.054257961963871434 %)
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | right removable region: 175
[2026-01-11 15:16:10] 2026-01-11 14:15:31,859 | INFO     | sum of square deviations: 1838657730.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,860 | INFO     | sum of deviations: -7357684457.999999
[2026-01-11 15:16:10] 2026-01-11 14:15:31,860 | INFO     | mean x: 1768135421.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,860 | INFO     | mean y: 2305841.806629834
[2026-01-11 15:16:10] 2026-01-11 14:15:31,860 | INFO     | intersect: 7077783944.373868
[2026-01-11 15:16:10] 2026-01-11 14:15:31,860 | INFO     | chi2: 0.7970921534076546
[2026-01-11 15:16:10] 2026-01-11 14:15:31,860 | INFO     | current chi2=0.7970921534076546 (change=56.203993927498615 %)
[2026-01-11 15:16:10] 2026-01-11 14:15:31,861 | INFO     | sum of square deviations: 1690450300.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,861 | INFO     | sum of deviations: -5326406692.500001
[2026-01-11 15:16:10] 2026-01-11 14:15:31,861 | INFO     | mean x: 1768135573.5
[2026-01-11 15:16:10] 2026-01-11 14:15:31,862 | INFO     | mean y: 2303752.5056818184
[2026-01-11 15:16:10] 2026-01-11 14:15:31,862 | INFO     | intersect: 5573487449.499156
[2026-01-11 15:16:10] 2026-01-11 14:15:31,862 | INFO     | chi2: 0.7922096106751919
[2026-01-11 15:16:10] 2026-01-11 14:15:31,862 | INFO     | current chi2=0.7922096106751919 (change=0.6125443227096511 %)
[2026-01-11 15:16:10] 2026-01-11 14:15:31,862 | INFO     | left removable region: 20
[2026-01-11 15:16:10] 2026-01-11 14:15:31,862 | INFO     | sum of square deviations: 1154663510.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | sum of deviations: 3433115135.9999995
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | mean x: 1768135543.0
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | mean y: 2317055.580645161
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | intersect: -5254810101.033907
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | chi2: 0.0009666986601443905
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | current memory leak: 2.97 B/s (using 155 data points, chi2=0.00)
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | could have reported an average CPU frequency of 3899 MHz (10 samples)
[2026-01-11 15:16:10] 2026-01-11 14:15:31,863 | INFO     | ..............................
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . Timing measurements:
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . get job = 0 s
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . initial setup = 1 s
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . payload setup = 3 s
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . stage-in = 0 s
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . payload execution = 11297 s
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . stage-out = 0 s
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | . log creation = 0 s
[2026-01-11 15:16:10] 2026-01-11 14:15:31,864 | INFO     | ..............................
[2026-01-11 15:16:10] 2026-01-11 14:15:32,260 | INFO     | 
[2026-01-11 15:16:10] 2026-01-11 14:15:32,260 | INFO     | job summary report
[2026-01-11 15:16:10] 2026-01-11 14:15:32,260 | INFO     | --------------------------------------------------
[2026-01-11 15:16:10] 2026-01-11 14:15:32,260 | INFO     | PanDA job id: 6963163223
[2026-01-11 15:16:10] 2026-01-11 14:15:32,260 | INFO     | task id: 47898826
[2026-01-11 15:16:10] 2026-01-11 14:15:32,260 | INFO     | errors: (none)
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | pilot state: finished 
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | transexitcode: 0
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | exeerrorcode: 0
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | exeerrordiag: 
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | exitcode: 0
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | exitmsg: OK
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | cpuconsumptiontime: 33238 s
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | nevents: 400
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | neventsw: 0
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | pid: 318961
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | pgrp: 318961
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | corecount: 3
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | event service: False
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | sizes: {0: 2283748, 1: 2284003, 3: 2284265, 11: 2284293, 11304: 2313759, 11305: 2313758, 11306: 2322952, 11308: 2323008, 11312: 2323202}
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | --------------------------------------------------
[2026-01-11 15:16:10] 2026-01-11 14:15:32,261 | INFO     | 
[2026-01-11 15:16:10] 2026-01-11 14:15:32,262 | INFO     | executing command: ls -lF /var/lib/boinc/boinc/slots/1
[2026-01-11 15:16:10] 2026-01-11 14:15:32,275 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,275 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,275 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,276 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 15:16:10] 2026-01-11 14:15:32,277 | INFO     | job 6963163223 has completed (purged errors)
[2026-01-11 15:16:10] 2026-01-11 14:15:32,277 | INFO     | overall cleanup function is called
[2026-01-11 15:16:10] 2026-01-11 14:15:33,281 | INFO     | --- collectZombieJob: --- 10, [318961]
[2026-01-11 15:16:10] 2026-01-11 14:15:33,282 | INFO     | zombie collector waiting for pid 318961
[2026-01-11 15:16:10] 2026-01-11 14:15:33,282 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 15:16:10] 2026-01-11 14:15:33,282 | INFO     | collected zombie processes
[2026-01-11 15:16:10] 2026-01-11 14:15:33,282 | INFO     | will attempt to kill all subprocesses of pid=318961
[2026-01-11 15:16:10] 2026-01-11 14:15:33,373 | INFO     | process IDs to be killed: [318961] (in reverse order)
[2026-01-11 15:16:10] 2026-01-11 14:15:33,408 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 15:16:10] 2026-01-11 14:15:33,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 15:16:10] 2026-01-11 14:15:33,411 | INFO     | did not find any defunct processes belonging to 318961
[2026-01-11 15:16:10] 2026-01-11 14:15:33,413 | INFO     | did not find any defunct processes belonging to 318961
[2026-01-11 15:16:10] 2026-01-11 14:15:33,413 | INFO     | ready for new job
[2026-01-11 15:16:10] 2026-01-11 14:15:33,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 15:16:10] 2026-01-11 14:15:33,415 | INFO     | ***************************************
[2026-01-11 15:16:10] 2026-01-11 14:15:33,415 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 15:16:10] 2026-01-11 14:15:33,415 | INFO     | ***************************************
[2026-01-11 15:16:10] 2026-01-11 14:15:33,415 | INFO     | 
[2026-01-11 15:16:10] 2026-01-11 14:15:33,416 | INFO     | architecture information:
[2026-01-11 15:16:10] 2026-01-11 14:15:33,416 | INFO     | executing command: cat /etc/os-release
[2026-01-11 15:16:10] 2026-01-11 14:15:33,426 | INFO     | cat /etc/os-release:
[2026-01-11 15:16:10] NAME="CentOS Linux"
[2026-01-11 15:16:10] VERSION="7 (Core)"
[2026-01-11 15:16:10] ID="centos"
[2026-01-11 15:16:10] ID_LIKE="rhel fedora"
[2026-01-11 15:16:10] VERSION_ID="7"
[2026-01-11 15:16:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 15:16:10] ANSI_COLOR="0;31"
[2026-01-11 15:16:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 15:16:10] HOME_URL="https://www.centos.org/"
[2026-01-11 15:16:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 15:16:10] 
[2026-01-11 15:16:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 15:16:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 15:16:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 15:16:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 15:16:10] 
[2026-01-11 15:16:10] 2026-01-11 14:15:33,426 | INFO     | ***************************************
[2026-01-11 15:16:10] 2026-01-11 14:15:33,929 | INFO     | executing command: df -mP /var/lib/boinc/boinc/slots/1
[2026-01-11 15:16:10] 2026-01-11 14:15:33,940 | INFO     | sufficient remaining disk space (383219924992 B)
[2026-01-11 15:16:10] 2026-01-11 14:15:33,940 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 15:16:10] 2026-01-11 14:15:33,940 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 15:16:10] 2026-01-11 14:15:33,940 | INFO     | update_server=False
[2026-01-11 15:16:10] 2026-01-11 14:15:33,940 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 15:16:10] 2026-01-11 14:15:33,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 15:16:10] 2026-01-11 14:15:34,111 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 15:16:10] 2026-01-11 14:15:34,111 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 15:16:10] 2026-01-11 14:15:34,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 15:16:10] 2026-01-11 14:15:34,112 | INFO     | will abort loop
[2026-01-11 15:16:10] 2026-01-11 14:15:34,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 15:16:10] 2026-01-11 14:15:34,459 | INFO     | all payload control threads have been joined
[2026-01-11 15:16:10] 2026-01-11 14:15:34,684 | INFO     | all data control threads have been joined
[2026-01-11 15:16:10] 2026-01-11 14:15:34,942 | INFO     | [job] retrieve thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:34,998 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,085 | INFO     | [payload] validate_post thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,114 | INFO     | [job] job monitor thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,249 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,446 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,464 | INFO     | [payload] control thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,498 | INFO     | all job control threads have been joined
[2026-01-11 15:16:10] 2026-01-11 14:15:35,688 | INFO     | [data] control thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,930 | INFO     | [payload] failed_post thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:35,946 | INFO     | [data] copytool_out thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:36,323 | INFO     | [data] copytool_in thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:36,338 | INFO     | [job] validate thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:36,502 | INFO     | [job] control thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:36,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 15:16:10] 2026-01-11 14:15:37,943 | INFO     | [job] queue monitor thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:38,123 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:15:44,146 | INFO     | job.realtimelogging is not enabled
[2026-01-11 15:16:10] 2026-01-11 14:15:45,151 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 15:16:10] 2026-01-11 14:16:03,820 | INFO     | [monitor] cgroup control has ended
[2026-01-11 15:16:10] 2026-01-11 14:16:04,409 | INFO     | PID=312420 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 15:16:10] 2026-01-11 14:16:04,409 | INFO     | .. there are 4 such processes running
[2026-01-11 15:16:10] 2026-01-11 14:16:04,410 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 15:16:10] 2026-01-11 14:16:04,410 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 15:16:10] 2026-01-11 14:16:04,410 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 15:16:10] 2026-01-11 14:16:05,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140467932104512)>', '<ExcThread(monitor, started 140467282888448)>']
[2026-01-11 15:16:10] 2026-01-11 14:16:06,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 15:16:10] 2026-01-11 14:16:06,416 | INFO     | [monitor] control thread has ended
[2026-01-11 15:16:10] 2026-01-11 14:16:10,531 | INFO     | all workflow threads have been joined
[2026-01-11 15:16:10] 2026-01-11 14:16:10,531 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 15:16:10] 2026-01-11 14:16:10,531 | INFO     | traces error code: 0
[2026-01-11 15:16:10] 2026-01-11 14:16:10,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 15:16:10] 2026-01-11 14:16:10,613 [wrapper] ==== pilot stdout END ====
[2026-01-11 15:16:10] 2026-01-11 14:16:10,614 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 15:16:10] 2026-01-11 14:16:10,616 [wrapper] pilotpid: 312420
[2026-01-11 15:16:10] 2026-01-11 14:16:10,618 [wrapper] Pilot exit status: 0
[2026-01-11 15:16:10] 2026-01-11 14:16:10,624 [wrapper] pandaids: 6963163223
[2026-01-11 15:16:10] 2026-01-11 14:16:10,648 [wrapper] cleanup supervisor_pilot  524039 312421
[2026-01-11 15:16:10] 2026-01-11 14:16:10,650 [wrapper] Test setup, not cleaning
[2026-01-11 15:16:10] 2026-01-11 14:16:10,652 [wrapper] apfmon messages muted
[2026-01-11 15:16:10] 2026-01-11 14:16:10,654 [wrapper] ==== wrapper stdout END ====
[2026-01-11 15:16:10] 2026-01-11 14:16:10,655 [wrapper] ==== wrapper stderr END ====
[2026-01-11 15:16:10]  *** Error codes and diagnostics ***
[2026-01-11 15:16:10]     "exeErrorCode": 0,
[2026-01-11 15:16:10]     "exeErrorDiag": "",
[2026-01-11 15:16:10]     "pilotErrorCode": 0,
[2026-01-11 15:16:10]     "pilotErrorDiag": "",
[2026-01-11 15:16:10]  *** Listing of results directory ***
[2026-01-11 15:16:10] insgesamt 442152
[2026-01-11 15:16:10] -rwx------ 1 boinc boinc     36322  9. Jan 01:56 runpilot2-wrapper.sh
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc      5112  9. Jan 01:56 queuedata.json
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc    579449  9. Jan 01:57 pilot3.tar.gz
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc       100 11. Jan 12:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 15:16:10] -rwxr-xr-x 1 boinc boinc      7986 11. Jan 12:06 run_atlas
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc       105 11. Jan 12:06 job.xml
[2026-01-11 15:16:10] -rw-r--r-- 2 boinc boinc     15847 11. Jan 12:06 start_atlas.sh
[2026-01-11 15:16:10] drwxrwx--x 2 boinc boinc      4096 11. Jan 12:06 shared
[2026-01-11 15:16:10] -rw-r--r-- 2 boinc boinc    592394 11. Jan 12:06 input.tar.gz
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc      6997 11. Jan 12:06 init_data.xml
[2026-01-11 15:16:10] -rw-r--r-- 2 boinc boinc 225495439 11. Jan 12:06 EVNT.47898824._001314.pool.root.1
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc         0 11. Jan 12:06 boinc_lockfile
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc      2519 11. Jan 12:06 pandaJob.out
[2026-01-11 15:16:10] -rw------- 1 boinc boinc        52 11. Jan 12:06 setup.sh.local
[2026-01-11 15:16:10] -rw------- 1 boinc boinc    989548 11. Jan 12:06 agis_schedconf.cvmfs.json
[2026-01-11 15:16:10] drwx------ 5 boinc boinc      4096 11. Jan 12:06 pilot3
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc       530 11. Jan 15:14 boinc_task_state.xml
[2026-01-11 15:16:10] -rw------- 1 boinc boinc 219378777 11. Jan 15:14 HITS.47898826._034450.pool.root.1
[2026-01-11 15:16:10] -rw------- 1 boinc boinc        95 11. Jan 15:15 pilot_heartbeat.json
[2026-01-11 15:16:10] -rw------- 1 boinc boinc      1015 11. Jan 15:15 memory_monitor_summary.json
[2026-01-11 15:16:10] -rw------- 1 boinc boinc   1516240 11. Jan 15:15 agis_ddmendpoints.agis.ALL.json
[2026-01-11 15:16:10] -rw------- 1 boinc boinc    333454 11. Jan 15:15 log.47898826._034450.job.log.tgz.1
[2026-01-11 15:16:10] -rw------- 1 boinc boinc      7735 11. Jan 15:15 heartbeat.json
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc        28 11. Jan 15:15 wrapper_checkpoint.txt
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc      8192 11. Jan 15:15 boinc_mmap_file
[2026-01-11 15:16:10] -rw------- 1 boinc boinc      5087 11. Jan 15:16 pilotlog.txt
[2026-01-11 15:16:10] -rw------- 1 boinc boinc   1649986 11. Jan 15:16 log.47898826._034450.job.log.1
[2026-01-11 15:16:10] -rw------- 1 boinc boinc       357 11. Jan 15:16 output.list
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc       620 11. Jan 15:16 runtime_log
[2026-01-11 15:16:10] -rw------- 1 boinc boinc   2007040 11. Jan 15:16 result.tar.gz
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc      9378 11. Jan 15:16 runtime_log.err
[2026-01-11 15:16:10] -rw------- 1 boinc boinc       645 11. Jan 15:16 IOJKDm1yFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjilKDmtDOupm.diag
[2026-01-11 15:16:10] -rw-r--r-- 1 boinc boinc     20783 11. Jan 15:16 stderr.txt
[2026-01-11 15:16:10] HITS file was successfully produced:
[2026-01-11 15:16:10] -rw------- 1 boinc boinc 219378777 11. Jan 15:14 shared/HITS.pool.root.1
[2026-01-11 15:16:10]  *** Contents of shared directory: ***
[2026-01-11 15:16:10] insgesamt 437016
[2026-01-11 15:16:10] -rw-r--r-- 2 boinc boinc     15847 11. Jan 12:06 start_atlas.sh
[2026-01-11 15:16:10] -rw-r--r-- 2 boinc boinc    592394 11. Jan 12:06 input.tar.gz
[2026-01-11 15:16:10] -rw-r--r-- 2 boinc boinc 225495439 11. Jan 12:06 ATLAS.root_0
[2026-01-11 15:16:10] -rw------- 1 boinc boinc 219378777 11. Jan 15:14 HITS.pool.root.1
[2026-01-11 15:16:10] -rw------- 1 boinc boinc   2007040 11. Jan 15:16 result.tar.gz
15:16:11 (308644): run_atlas exited; CPU time 33371.782715
15:16:11 (308644): called boinc_finish(0)

</stderr_txt>
]]>

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