Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:27:37 (1209189): wrapper (7.7.26015): starting
16:27:37 (1209189): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 16:27:37] Arguments: --nthreads 4
[2026-01-09 16:27:37] Threads: 4
[2026-01-09 16:27:37] Checking for CVMFS
[2026-01-09 16:27:37] No cvmfs_config command found, will try listing directly
[2026-01-09 16:27:37] CVMFS is ok
[2026-01-09 16:27:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:27:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:27:37] Further information can be found at the LHC@home message board.
[2026-01-09 16:27:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:27:37] Checking for apptainer binary...
[2026-01-09 16:27:37] which: no apptainer in ((null))
[2026-01-09 16:27:37] apptainer is not installed, using version from CVMFS
[2026-01-09 16:27:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:27:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot104/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-01-09 16:27:37] apptainer works
[2026-01-09 16:27:37] Set ATHENA_PROC_NUMBER=4
[2026-01-09 16:27:37] Set ATHENA_CORE_NUMBER=4
[2026-01-09 16:27:37] Starting ATLAS job with PandaID=6963166054
[2026-01-09 16:27:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot104/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:22:39]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:22:39] 2026-01-09 19:19:13,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:22:39] 2026-01-09 19:19:14,677 | INFO     | time since job start (13881s) is within the limit (349056.0s)
[2026-01-09 20:22:39] 2026-01-09 19:19:15,782 | INFO     | monitor loop #940: job 0:6963166054 is in state 'finished'
[2026-01-09 20:22:39] 2026-01-09 19:19:15,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:22:39] 2026-01-09 19:19:16,669 | INFO     | PID=1213531 has CPU usage=22.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 20:22:39] 2026-01-09 19:19:16,669 | INFO     | .. there are 3 such processes running
[2026-01-09 20:22:39] 2026-01-09 19:19:17,670 | INFO     | time since job start (13884s) is within the limit (349056.0s)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,286 | INFO     | monitor loop #941: job 0:6963166054 is in state 'finished'
[2026-01-09 20:22:39] 2026-01-09 19:19:18,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,593 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 20:22:39] 2026-01-09 19:19:18,613 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2672.0118906250004
[2026-01-09 20:22:39] 2026-01-09 19:19:18,638 | INFO     | using path: /scratch/boinc/var/slot104/slots/0/PanDA_Pilot-6963166054/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,639 | INFO     | extracted standard info from prmon json
[2026-01-09 20:22:39] 2026-01-09 19:19:18,639 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:22:39] 2026-01-09 19:19:18,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:22:39] 2026-01-09 19:19:18,639 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:22:39] 2026-01-09 19:19:18,639 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:22:39] 2026-01-09 19:19:18,643 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:22:39] 2026-01-09 19:19:18,644 | INFO     | sum of square deviations: 3627000098.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,645 | INFO     | sum of deviations: -63065610304.000015
[2026-01-09 20:22:39] 2026-01-09 19:19:18,645 | INFO     | mean x: 1767979402.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,645 | INFO     | mean y: 2430983.5198237887
[2026-01-09 20:22:39] 2026-01-09 19:19:18,646 | INFO     | intersect: 30743731501.68457
[2026-01-09 20:22:39] 2026-01-09 19:19:18,646 | INFO     | chi2: 1.6128481577400795
[2026-01-09 20:22:39] 2026-01-09 19:19:18,646 | INFO     | sum of square deviations: 3392567795.5
[2026-01-09 20:22:39] 2026-01-09 19:19:18,648 | INFO     | sum of deviations: -61045049049.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,648 | INFO     | mean x: 1767979249.5
[2026-01-09 20:22:39] 2026-01-09 19:19:18,648 | INFO     | mean y: 2432298.117117117
[2026-01-09 20:22:39] 2026-01-09 19:19:18,648 | INFO     | intersect: 31815025740.316975
[2026-01-09 20:22:39] 2026-01-09 19:19:18,649 | INFO     | chi2: 1.6065115303440773
[2026-01-09 20:22:39] 2026-01-09 19:19:18,649 | INFO     | current chi2=1.6065115303440773 (change=0.3928843124873598 %)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,649 | INFO     | right removable region: 221
[2026-01-09 20:22:39] 2026-01-09 19:19:18,649 | INFO     | sum of square deviations: 3392567795.5
[2026-01-09 20:22:39] 2026-01-09 19:19:18,651 | INFO     | sum of deviations: -86533823012.5
[2026-01-09 20:22:39] 2026-01-09 19:19:18,651 | INFO     | mean x: 1767979554.5
[2026-01-09 20:22:39] 2026-01-09 19:19:18,651 | INFO     | mean y: 2446009.626126126
[2026-01-09 20:22:39] 2026-01-09 19:19:18,651 | INFO     | intersect: 45098090100.14423
[2026-01-09 20:22:39] 2026-01-09 19:19:18,651 | INFO     | chi2: 0.38386852505725894
[2026-01-09 20:22:39] 2026-01-09 19:19:18,651 | INFO     | current chi2=0.38386852505725894 (change=76.19933883948909 %)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,652 | INFO     | sum of square deviations: 3168461268.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,653 | INFO     | sum of deviations: -79102784316.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,653 | INFO     | mean x: 1767979707.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,653 | INFO     | mean y: 2440932.1566820275
[2026-01-09 20:22:39] 2026-01-09 19:19:18,654 | INFO     | intersect: 44141253311.000595
[2026-01-09 20:22:39] 2026-01-09 19:19:18,654 | INFO     | chi2: 0.3775470186269866
[2026-01-09 20:22:39] 2026-01-09 19:19:18,654 | INFO     | current chi2=0.3775470186269866 (change=1.6467894650465067 %)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,654 | INFO     | left removable region: 20
[2026-01-09 20:22:39] 2026-01-09 19:19:18,654 | INFO     | sum of square deviations: 2518000700.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,655 | INFO     | sum of deviations: -56007205510.000015
[2026-01-09 20:22:39] 2026-01-09 19:19:18,656 | INFO     | mean x: 1767979829.0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,656 | INFO     | mean y: 2427058.4825870646
[2026-01-09 20:22:39] 2026-01-09 19:19:18,656 | INFO     | intersect: 39327122091.465576
[2026-01-09 20:22:39] 2026-01-09 19:19:18,656 | INFO     | chi2: 0.32477199680061436
[2026-01-09 20:22:39] 2026-01-09 19:19:18,656 | INFO     | current memory leak: -22.24 B/s (using 201 data points, chi2=0.32)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | could have reported an average CPU frequency of 2695 MHz (11 samples)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | ..............................
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | . Timing measurements:
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | . get job = 0 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | . initial setup = 1 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | . payload setup = 9 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | . stage-in = 0 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | . payload execution = 13842 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,657 | INFO     | . stage-out = 1 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,658 | INFO     | . log creation = 0 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,658 | INFO     | ..............................
[2026-01-09 20:22:39] 2026-01-09 19:19:18,752 | INFO     | 
[2026-01-09 20:22:39] 2026-01-09 19:19:18,752 | INFO     | job summary report
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | --------------------------------------------------
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | PanDA job id: 6963166054
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | task id: 47898826
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | errors: (none)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | pilot state: finished 
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | transexitcode: 0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | exeerrorcode: 0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | exeerrordiag: 
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | exitcode: 0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,753 | INFO     | exitmsg: OK
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | cpuconsumptiontime: 52938 s
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | nevents: 400
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | neventsw: 0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | pid: 1221028
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | pgrp: 1221028
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | corecount: 4
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | event service: False
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | sizes: {0: 2283812, 1: 2284011, 8: 2284273, 12: 2284301, 13855: 2315328, 13858: 2324350, 13860: 2324534, 13867: 2324728}
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | --------------------------------------------------
[2026-01-09 20:22:39] 2026-01-09 19:19:18,754 | INFO     | 
[2026-01-09 20:22:39] 2026-01-09 19:19:18,755 | INFO     | executing command: ls -lF /scratch/boinc/var/slot104/slots/0
[2026-01-09 20:22:39] 2026-01-09 19:19:18,787 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,787 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,787 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,787 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,789 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,789 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:22:39] 2026-01-09 19:19:18,789 | INFO     | job 6963166054 has completed (purged errors)
[2026-01-09 20:22:39] 2026-01-09 19:19:18,789 | INFO     | overall cleanup function is called
[2026-01-09 20:22:39] 2026-01-09 19:19:19,799 | INFO     | --- collectZombieJob: --- 10, [1221028]
[2026-01-09 20:22:39] 2026-01-09 19:19:19,799 | INFO     | zombie collector waiting for pid 1221028
[2026-01-09 20:22:39] 2026-01-09 19:19:19,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:22:39] 2026-01-09 19:19:19,799 | INFO     | collected zombie processes
[2026-01-09 20:22:39] 2026-01-09 19:19:19,799 | INFO     | will attempt to kill all subprocesses of pid=1221028
[2026-01-09 20:22:39] 2026-01-09 19:19:20,558 | INFO     | process IDs to be killed: [1221028] (in reverse order)
[2026-01-09 20:22:39] 2026-01-09 19:19:20,817 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:22:39] 2026-01-09 19:19:20,817 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:22:39] 2026-01-09 19:19:20,850 | INFO     | did not find any defunct processes belonging to 1221028
[2026-01-09 20:22:39] 2026-01-09 19:19:20,884 | INFO     | did not find any defunct processes belonging to 1221028
[2026-01-09 20:22:39] 2026-01-09 19:19:20,884 | INFO     | ready for new job
[2026-01-09 20:22:39] 2026-01-09 19:19:20,884 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:22:39] 2026-01-09 19:19:20,887 | INFO     | ***************************************
[2026-01-09 20:22:39] 2026-01-09 19:19:20,887 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:22:39] 2026-01-09 19:19:20,887 | INFO     | ***************************************
[2026-01-09 20:22:39] 2026-01-09 19:19:20,887 | INFO     | 
[2026-01-09 20:22:39] 2026-01-09 19:19:20,895 | INFO     | architecture information:
[2026-01-09 20:22:39] 2026-01-09 19:19:20,895 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:22:39] 2026-01-09 19:19:20,921 | INFO     | cat /etc/os-release:
[2026-01-09 20:22:39] NAME="CentOS Linux"
[2026-01-09 20:22:39] VERSION="7 (Core)"
[2026-01-09 20:22:39] ID="centos"
[2026-01-09 20:22:39] ID_LIKE="rhel fedora"
[2026-01-09 20:22:39] VERSION_ID="7"
[2026-01-09 20:22:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:22:39] ANSI_COLOR="0;31"
[2026-01-09 20:22:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:22:39] HOME_URL="https://www.centos.org/"
[2026-01-09 20:22:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:22:39] 
[2026-01-09 20:22:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:22:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:22:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:22:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:22:39] 
[2026-01-09 20:22:39] 2026-01-09 19:19:20,921 | INFO     | ***************************************
[2026-01-09 20:22:39] 2026-01-09 19:19:21,424 | INFO     | executing command: df -mP /scratch/boinc/var/slot104/slots/0
[2026-01-09 20:22:39] 2026-01-09 19:19:21,451 | INFO     | sufficient remaining disk space (3298840018944 B)
[2026-01-09 20:22:39] 2026-01-09 19:19:21,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:22:39] 2026-01-09 19:19:21,452 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:22:39] 2026-01-09 19:19:21,452 | INFO     | update_server=False
[2026-01-09 20:22:39] 2026-01-09 19:19:21,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:22:39] 2026-01-09 19:19:21,794 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:22:39] 2026-01-09 19:19:21,795 | INFO     | aborting loop
[2026-01-09 20:22:39] 2026-01-09 19:19:21,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:22:39] 2026-01-09 19:19:22,183 | INFO     | all data control threads have been joined
[2026-01-09 20:22:39] 2026-01-09 19:19:22,455 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:22,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:22:39] 2026-01-09 19:19:22,634 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:22,667 | INFO     | [job] validate thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:22,688 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:22,753 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:22,794 | INFO     | all payload control threads have been joined
[2026-01-09 20:22:39] 2026-01-09 19:19:22,800 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:23,018 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:23,034 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:23,088 | INFO     | all job control threads have been joined
[2026-01-09 20:22:39] 2026-01-09 19:19:23,101 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:23,188 | INFO     | [data] control thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:23,204 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:23,759 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:22:39] 2026-01-09 19:19:23,802 | INFO     | [payload] control thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:24,094 | INFO     | [job] control thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:24,600 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:24,764 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:25,957 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:22:39] 2026-01-09 19:19:51,691 | INFO     | PID=1213531 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:22:39] 2026-01-09 19:19:51,691 | INFO     | .. there are 3 such processes running
[2026-01-09 20:22:39] 2026-01-09 19:19:51,692 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:22:39] 2026-01-09 19:19:51,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:22:39] 2026-01-09 19:19:51,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:22:39] 2026-01-09 19:20:15,821 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:22:39] 2026-01-09 19:20:16,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456121820992)>', '<ExcThread(monitor, started 23455810426624)>']
[2026-01-09 20:22:39] 2026-01-09 19:20:16,816 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:22:39] 2026-01-09 19:20:16,817 | INFO     | [monitor] control thread has ended
[2026-01-09 20:22:39] 2026-01-09 19:20:21,438 | INFO     | all workflow threads have been joined
[2026-01-09 20:22:39] 2026-01-09 19:20:21,439 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:22:39] 2026-01-09 19:20:21,439 | INFO     | traces error code: 0
[2026-01-09 20:22:39] 2026-01-09 19:20:21,439 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:22:39] 2026-01-09 19:20:21,641 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:22:39] 2026-01-09 19:20:21,645 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:22:39] 2026-01-09 19:20:21,649 [wrapper] pilotpid: 1213531
[2026-01-09 20:22:39] 2026-01-09 19:20:21,653 [wrapper] Pilot exit status: 0
[2026-01-09 20:22:39] 2026-01-09 19:20:21,668 [wrapper] pandaids: 6963166054
[2026-01-09 20:22:39] 2026-01-09 19:20:21,848 [wrapper] cleanup supervisor_pilot 1455630 1213532
[2026-01-09 20:22:39] 2026-01-09 19:20:21,852 [wrapper] Test setup, not cleaning
[2026-01-09 20:22:39] 2026-01-09 19:20:21,858 [wrapper] apfmon messages muted
[2026-01-09 20:22:39] 2026-01-09 19:20:21,862 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:22:39] 2026-01-09 19:20:21,865 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:22:39]  *** Error codes and diagnostics ***
[2026-01-09 20:22:39]     "exeErrorCode": 0,
[2026-01-09 20:22:39]     "exeErrorDiag": "",
[2026-01-09 20:22:39]     "pilotErrorCode": 0,
[2026-01-09 20:22:39]     "pilotErrorDiag": "",
[2026-01-09 20:22:39]  *** Listing of results directory ***
[2026-01-09 20:22:39] total 446684
[2026-01-09 20:22:39] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc       100 Jan  9 15:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:22:39] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 15:31 run_atlas
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc       105 Jan  9 15:31 job.xml
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc      6691 Jan  9 16:27 init_data.xml
[2026-01-09 20:22:39] -rw-r--r-- 2 boinc boinc 225685227 Jan  9 16:27 EVNT.47898824._001362.pool.root.1
[2026-01-09 20:22:39] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:27 start_atlas.sh
[2026-01-09 20:22:39] drwxrwx--x 2 boinc boinc      4096 Jan  9 16:27 shared
[2026-01-09 20:22:39] -rw-r--r-- 2 boinc boinc    592399 Jan  9 16:27 input.tar.gz
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:27 boinc_lockfile
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc      2520 Jan  9 16:27 pandaJob.out
[2026-01-09 20:22:39] -rw------- 1 boinc boinc    989377 Jan  9 16:27 agis_schedconf.cvmfs.json
[2026-01-09 20:22:39] drwx------ 5 boinc boinc      4096 Jan  9 16:27 pilot3
[2026-01-09 20:22:39] -rw------- 1 boinc boinc 223190576 Jan  9 20:18 HITS.47898826._035167.pool.root.1
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc       528 Jan  9 20:18 boinc_task_state.xml
[2026-01-09 20:22:39] -rw------- 1 boinc boinc      1031 Jan  9 20:19 memory_monitor_summary.json
[2026-01-09 20:22:39] -rw------- 1 boinc boinc   1516240 Jan  9 20:19 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:22:39] -rw------- 1 boinc boinc    406037 Jan  9 20:19 log.47898826._035167.job.log.tgz.1
[2026-01-09 20:22:39] -rw------- 1 boinc boinc      7792 Jan  9 20:19 heartbeat.json
[2026-01-09 20:22:39] -rw------- 1 boinc boinc        95 Jan  9 20:19 pilot_heartbeat.json
[2026-01-09 20:22:39] -rw------- 1 boinc boinc      4835 Jan  9 20:20 pilotlog.txt
[2026-01-09 20:22:39] -rw------- 1 boinc boinc   1900672 Jan  9 20:20 log.47898826._035167.job.log.1
[2026-01-09 20:22:39] -rw------- 1 boinc boinc       357 Jan  9 20:20 output.list
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc       620 Jan  9 20:20 runtime_log
[2026-01-09 20:22:39] -rw------- 1 boinc boinc   2324480 Jan  9 20:20 result.tar.gz
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc      9223 Jan  9 20:20 runtime_log.err
[2026-01-09 20:22:39] -rw------- 1 boinc boinc       667 Jan  9 20:20 ruVKDmQzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtmlKDmUfBJGm.diag
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc        26 Jan  9 20:22 wrapper_checkpoint.txt
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc      8192 Jan  9 20:22 boinc_mmap_file
[2026-01-09 20:22:39] -rw-r--r-- 1 boinc boinc     21221 Jan  9 20:22 stderr.txt
[2026-01-09 20:22:39] HITS file was successfully produced:
[2026-01-09 20:22:39] -rw------- 1 boinc boinc 223190576 Jan  9 20:18 shared/HITS.pool.root.1
[2026-01-09 20:22:39]  *** Contents of shared directory: ***
[2026-01-09 20:22:39] total 441232
[2026-01-09 20:22:39] -rw-r--r-- 2 boinc boinc 225685227 Jan  9 16:27 ATLAS.root_0
[2026-01-09 20:22:39] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:27 start_atlas.sh
[2026-01-09 20:22:39] -rw-r--r-- 2 boinc boinc    592399 Jan  9 16:27 input.tar.gz
[2026-01-09 20:22:39] -rw------- 1 boinc boinc 223190576 Jan  9 20:18 HITS.pool.root.1
[2026-01-09 20:22:39] -rw------- 1 boinc boinc   2324480 Jan  9 20:20 result.tar.gz
20:22:40 (1209189): run_atlas exited; CPU time 53945.616589
20:22:40 (1209189): called boinc_finish(0)

</stderr_txt>
]]>

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