Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:15:35 (2785934): wrapper (7.7.26015): starting
04:15:35 (2785934): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 04:15:35] Arguments: --nthreads 3
[2026-01-10 04:15:35] Threads: 3
[2026-01-10 04:15:35] Checking for CVMFS
[2026-01-10 04:15:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:15:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:15:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:15:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:15:35] 2.9.2.0 2112298 2822 87348 154966 4 1 14635575 36864000 0 130560 0 1783689 99.988 107049 5238 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 04:15:35] CVMFS is ok
[2026-01-10 04:15:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:15:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:15:35] Further information can be found at the LHC@home message board.
[2026-01-10 04:15:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:15:35] Checking for apptainer binary...
[2026-01-10 04:15:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 04:15:35] Running /usr/bin/apptainer --version
[2026-01-10 04:15:35] apptainer version 1.4.1-1.1
[2026-01-10 04:15:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:15:35] thA332
[2026-01-10 04:15:35] apptainer works
[2026-01-10 04:15:35] Set ATHENA_PROC_NUMBER=3
[2026-01-10 04:15:35] Set ATHENA_CORE_NUMBER=3
[2026-01-10 04:15:35] Starting ATLAS job with PandaID=6963153996
[2026-01-10 04:15:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 06:11:56]  *** The last 200 lines of the pilot log: ***
[2026-01-10 06:11:56] 2026-01-10 05:11:14,757 | INFO     | will attempt to kill all subprocesses of pid=2796101
[2026-01-10 06:11:56] 2026-01-10 05:11:14,801 | INFO     | process IDs to be killed: [2796101] (in reverse order)
[2026-01-10 06:11:56] 2026-01-10 05:11:14,825 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 06:11:56] 2026-01-10 05:11:14,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 06:11:56] 2026-01-10 05:11:14,827 | INFO     | did not find any defunct processes belonging to 2796101
[2026-01-10 06:11:56] 2026-01-10 05:11:14,828 | INFO     | did not find any defunct processes belonging to 2796101
[2026-01-10 06:11:56] 2026-01-10 05:11:14,828 | INFO     | ready for new job
[2026-01-10 06:11:56] 2026-01-10 05:11:14,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 06:11:56] 2026-01-10 05:11:14,829 | INFO     | ***************************************
[2026-01-10 06:11:56] 2026-01-10 05:11:14,829 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 06:11:56] 2026-01-10 05:11:14,829 | INFO     | ***************************************
[2026-01-10 06:11:56] 2026-01-10 05:11:14,829 | INFO     | 
[2026-01-10 06:11:56] 2026-01-10 05:11:14,829 | INFO     | architecture information:
[2026-01-10 06:11:56] 2026-01-10 05:11:14,829 | INFO     | executing command: cat /etc/os-release
[2026-01-10 06:11:56] 2026-01-10 05:11:14,838 | INFO     | cat /etc/os-release:
[2026-01-10 06:11:56] NAME="CentOS Linux"
[2026-01-10 06:11:56] VERSION="7 (Core)"
[2026-01-10 06:11:56] ID="centos"
[2026-01-10 06:11:56] ID_LIKE="rhel fedora"
[2026-01-10 06:11:56] VERSION_ID="7"
[2026-01-10 06:11:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 06:11:56] ANSI_COLOR="0;31"
[2026-01-10 06:11:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 06:11:56] HOME_URL="https://www.centos.org/"
[2026-01-10 06:11:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 06:11:56] 
[2026-01-10 06:11:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 06:11:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 06:11:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 06:11:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 06:11:56] 
[2026-01-10 06:11:56] 2026-01-10 05:11:14,838 | INFO     | ***************************************
[2026-01-10 06:11:56] 2026-01-10 05:11:15,341 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 06:11:56] 2026-01-10 05:11:15,354 | INFO     | sufficient remaining disk space (245044871168 B)
[2026-01-10 06:11:56] 2026-01-10 05:11:15,354 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 06:11:56] 2026-01-10 05:11:15,354 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 06:11:56] 2026-01-10 05:11:15,354 | INFO     | update_server=False
[2026-01-10 06:11:56] 2026-01-10 05:11:15,354 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 06:11:56] 2026-01-10 05:11:15,354 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:11:56] 2026-01-10 05:11:15,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 06:11:56] 2026-01-10 05:11:15,355 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:11:56] 2026-01-10 05:11:15,355 | INFO     | aborting loop
[2026-01-10 06:11:56] 2026-01-10 05:11:15,470 | INFO     | all job control threads have been joined
[2026-01-10 06:11:56] 2026-01-10 05:11:15,949 | INFO     | all payload control threads have been joined
[2026-01-10 06:11:56] 2026-01-10 05:11:16,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 06:11:56] 2026-01-10 05:11:16,360 | INFO     | [job] retrieve thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,360 | INFO     | [job] queue monitor thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,360 | INFO     | [job] job monitor thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,405 | INFO     | all data control threads have been joined
[2026-01-10 06:11:56] 2026-01-10 05:11:16,476 | INFO     | [job] control thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,476 | INFO     | [data] copytool_in thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,712 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,955 | INFO     | [payload] control thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,962 | INFO     | [payload] failed_post thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:16,988 | INFO     | [job] validate thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:17,053 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:17,081 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:17,410 | INFO     | [data] control thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:17,501 | INFO     | [payload] validate_post thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:18,111 | INFO     | [data] copytool_out thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:19,361 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:25,773 | INFO     | job.realtimelogging is not enabled
[2026-01-10 06:11:56] 2026-01-10 05:11:26,778 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 06:11:56] 2026-01-10 05:11:45,541 | INFO     | PID=2789658 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 06:11:56] 2026-01-10 05:11:45,541 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 06:11:56] 2026-01-10 05:11:45,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 06:11:56] 2026-01-10 05:11:45,541 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 06:11:56] 2026-01-10 05:11:50,382 | INFO     | [monitor] cgroup control has ended
[2026-01-10 06:11:56] 2026-01-10 05:11:51,388 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140400478775104)>', '<ExcThread(monitor, started 140399855265536)>']
[2026-01-10 06:11:56] 2026-01-10 05:11:51,573 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 06:11:56] 2026-01-10 05:11:51,574 | INFO     | [monitor] control thread has ended
[2026-01-10 06:11:56] 2026-01-10 05:11:56,406 | INFO     | all workflow threads have been joined
[2026-01-10 06:11:56] 2026-01-10 05:11:56,407 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 06:11:56] 2026-01-10 05:11:56,408 | INFO     | traces error code: 0
[2026-01-10 06:11:56] 2026-01-10 05:11:56,408 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 06:11:56] 2026-01-10 05:11:56,455 [wrapper] ==== pilot stdout END ====
[2026-01-10 06:11:56] 2026-01-10 05:11:56,457 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 06:11:56] 2026-01-10 05:11:56,459 [wrapper] pilotpid: 2789658
[2026-01-10 06:11:56] 2026-01-10 05:11:56,462 [wrapper] Pilot exit status: 0
[2026-01-10 06:11:56] 2026-01-10 05:11:56,469 [wrapper] pandaids: 6963153996
[2026-01-10 06:11:56] 2026-01-10 05:11:56,485 [wrapper] cleanup supervisor_pilot 2810464 2789659
[2026-01-10 06:11:56] 2026-01-10 05:11:56,487 [wrapper] Test setup, not cleaning
[2026-01-10 06:11:56] 2026-01-10 05:11:56,490 [wrapper] apfmon messages muted
[2026-01-10 06:11:56] 2026-01-10 05:11:56,492 [wrapper] ==== wrapper stdout END ====
[2026-01-10 06:11:56] 2026-01-10 05:11:56,494 [wrapper] ==== wrapper stderr END ====
[2026-01-10 06:11:56]  *** Error codes and diagnostics ***
[2026-01-10 06:11:56]     "exeErrorCode": 0,
[2026-01-10 06:11:56]     "exeErrorDiag": "",
[2026-01-10 06:11:56]     "pilotErrorCode": 0,
[2026-01-10 06:11:56]     "pilotErrorDiag": "",
[2026-01-10 06:11:56]  *** Listing of results directory ***
[2026-01-10 06:11:56] total 439592
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 06:11:56] -rwx------ 1 boinc boinc     36322 Jan  8 20:06 runpilot2-wrapper.sh
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:06 queuedata.json
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc       100 Jan 10 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 06:11:56] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 04:15 run_atlas
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc       105 Jan 10 04:15 job.xml
[2026-01-10 06:11:56] -rw-r--r-- 2 boinc boinc 225758411 Jan 10 04:15 EVNT.47898824._001177.pool.root.1
[2026-01-10 06:11:56] -rw-r--r-- 2 boinc boinc    592387 Jan 10 04:15 input.tar.gz
[2026-01-10 06:11:56] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:15 start_atlas.sh
[2026-01-10 06:11:56] drwxrwx--x 2 boinc boinc      4096 Jan 10 04:15 shared
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:15 boinc_setup_complete
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc      6439 Jan 10 04:15 init_data.xml
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:15 boinc_lockfile
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc      2520 Jan 10 04:15 pandaJob.out
[2026-01-10 06:11:56] -rw------- 1 boinc boinc    989374 Jan 10 04:15 agis_schedconf.cvmfs.json
[2026-01-10 06:11:56] -rw------- 1 boinc boinc   1516240 Jan 10 04:15 agis_ddmendpoints.agis.ALL.json
[2026-01-10 06:11:56] drwx------ 5 boinc boinc      4096 Jan 10 04:15 pilot3
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc       529 Jan 10 06:10 boinc_task_state.xml
[2026-01-10 06:11:56] -rw------- 1 boinc boinc 217915285 Jan 10 06:10 HITS.47898826._030412.pool.root.1
[2026-01-10 06:11:56] -rw------- 1 boinc boinc      1015 Jan 10 06:11 memory_monitor_summary.json
[2026-01-10 06:11:56] -rw------- 1 boinc boinc    283631 Jan 10 06:11 log.47898826._030412.job.log.tgz.1
[2026-01-10 06:11:56] -rw------- 1 boinc boinc      7760 Jan 10 06:11 heartbeat.json
[2026-01-10 06:11:56] -rw------- 1 boinc boinc        95 Jan 10 06:11 pilot_heartbeat.json
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc      8192 Jan 10 06:11 boinc_mmap_file
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc        27 Jan 10 06:11 wrapper_checkpoint.txt
[2026-01-10 06:11:56] -rw------- 1 boinc boinc      4824 Jan 10 06:11 pilotlog.txt
[2026-01-10 06:11:56] -rw------- 1 boinc boinc    999580 Jan 10 06:11 log.47898826._030412.job.log.1
[2026-01-10 06:11:56] -rw------- 1 boinc boinc       357 Jan 10 06:11 output.list
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc       620 Jan 10 06:11 runtime_log
[2026-01-10 06:11:56] -rw------- 1 boinc boinc   1300480 Jan 10 06:11 result.tar.gz
[2026-01-10 06:11:56] -rw------- 1 boinc boinc       659 Jan 10 06:11 zeMKDm9VAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvwfKDmgOneXo.diag
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc      8897 Jan 10 06:11 runtime_log.err
[2026-01-10 06:11:56] -rw-r--r-- 1 boinc boinc     10289 Jan 10 06:11 stderr.txt
[2026-01-10 06:11:56] HITS file was successfully produced:
[2026-01-10 06:11:56] -rw------- 1 boinc boinc 217915285 Jan 10 06:10 shared/HITS.pool.root.1
[2026-01-10 06:11:56]  *** Contents of shared directory: ***
[2026-01-10 06:11:56] total 435152
[2026-01-10 06:11:56] -rw-r--r-- 2 boinc boinc 225758411 Jan 10 04:15 ATLAS.root_0
[2026-01-10 06:11:56] -rw-r--r-- 2 boinc boinc    592387 Jan 10 04:15 input.tar.gz
[2026-01-10 06:11:56] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:15 start_atlas.sh
[2026-01-10 06:11:56] -rw------- 1 boinc boinc 217915285 Jan 10 06:10 HITS.pool.root.1
[2026-01-10 06:11:56] -rw------- 1 boinc boinc   1300480 Jan 10 06:11 result.tar.gz
06:11:58 (2785934): run_atlas exited; CPU time 20122.445916
06:11:58 (2785934): called boinc_finish(0)

</stderr_txt>
]]>

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