Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:59:20 (1129846): wrapper (7.7.26015): starting
21:59:20 (1129846): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 21:59:20] Arguments: --nthreads 3
[2026-01-09 21:59:20] Threads: 3
[2026-01-09 21:59:20] Checking for CVMFS
[2026-01-09 21:59:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 21:59:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 21:59:20] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 21:59:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 21:59:20] 2.9.2.0 474489 2749 89096 154956 0 57 16312107 36864001 0 130560 0 1760994 99.988 103025 3897 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 21:59:20] CVMFS is ok
[2026-01-09 21:59:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 21:59:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 21:59:20] Further information can be found at the LHC@home message board.
[2026-01-09 21:59:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 21:59:20] Checking for apptainer binary...
[2026-01-09 21:59:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 21:59:20] Running /usr/bin/apptainer --version
[2026-01-09 21:59:20] apptainer version 1.4.1-1.1
[2026-01-09 21:59:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 21:59:20] thA371
[2026-01-09 21:59:20] apptainer works
[2026-01-09 21:59:20] Set ATHENA_PROC_NUMBER=3
[2026-01-09 21:59:20] Set ATHENA_CORE_NUMBER=3
[2026-01-09 21:59:20] Starting ATLAS job with PandaID=6963167221
[2026-01-09 21:59:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:50:38]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:50:38] 2026-01-09 22:50:11,152 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:50:38] 2026-01-09 22:50:11,152 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:50:38] 2026-01-09 22:50:11,152 | INFO     | update_server=False
[2026-01-09 23:50:38] 2026-01-09 22:50:11,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:50:38] 2026-01-09 22:50:11,152 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 23:50:38] 2026-01-09 22:50:11,152 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:50:38] 2026-01-09 22:50:11,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:50:38] 2026-01-09 22:50:11,153 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:50:38] 2026-01-09 22:50:11,153 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:50:38] 2026-01-09 22:50:11,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:50:38] 2026-01-09 22:50:11,415 | INFO     | all payload control threads have been joined
[2026-01-09 23:50:38] 2026-01-09 22:50:11,521 | INFO     | all job control threads have been joined
[2026-01-09 23:50:38] 2026-01-09 22:50:11,527 | INFO     | all data control threads have been joined
[2026-01-09 23:50:38] 2026-01-09 22:50:11,614 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 23:50:38] 2026-01-09 22:50:11,615 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 23:50:38] 2026-01-09 22:50:11,615 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:50:38] 2026-01-09 22:50:11,615 | INFO     | will abort loop
[2026-01-09 23:50:38] 2026-01-09 22:50:12,158 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,158 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,328 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,421 | INFO     | [payload] control thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:50:38] 2026-01-09 22:50:12,476 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,527 | INFO     | [job] control thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,532 | INFO     | [data] control thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,617 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:12,963 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:13,041 | INFO     | [job] validate thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:13,056 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:13,116 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:13,348 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:13,493 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:14,461 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:15,317 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:50:38] 2026-01-09 22:50:33,196 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:50:38] 2026-01-09 22:50:33,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899587888960)>', '<ExcThread(monitor, started 139898946311936)>']
[2026-01-09 23:50:38] 2026-01-09 22:50:34,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:50:38] 2026-01-09 22:50:34,275 | INFO     | [monitor] control thread has ended
[2026-01-09 23:50:38] 2026-01-09 22:50:38,811 | INFO     | all workflow threads have been joined
[2026-01-09 23:50:38] 2026-01-09 22:50:38,811 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:50:38] 2026-01-09 22:50:38,811 | INFO     | traces error code: 0
[2026-01-09 23:50:38] 2026-01-09 22:50:38,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:50:38] 2026-01-09 22:50:38,862 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:50:38] 2026-01-09 22:50:38,864 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:50:38] 2026-01-09 22:50:38,867 [wrapper] pilotpid: 1133569
[2026-01-09 23:50:38] 2026-01-09 22:50:38,869 [wrapper] Pilot exit status: 0
[2026-01-09 23:50:38] 2026-01-09 22:50:38,876 [wrapper] pandaids: 6963167221
[2026-01-09 23:50:38] 2026-01-09 22:50:38,892 [wrapper] cleanup supervisor_pilot 1154423 1133570
[2026-01-09 23:50:38] 2026-01-09 22:50:38,894 [wrapper] Test setup, not cleaning
[2026-01-09 23:50:38] 2026-01-09 22:50:38,896 [wrapper] apfmon messages muted
[2026-01-09 23:50:38] 2026-01-09 22:50:38,898 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:50:38] 2026-01-09 22:50:38,901 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:50:38]  *** Error codes and diagnostics ***
[2026-01-09 23:50:38]     "exeErrorCode": 0,
[2026-01-09 23:50:38]     "exeErrorDiag": "",
[2026-01-09 23:50:38]     "pilotErrorCode": 0,
[2026-01-09 23:50:38]     "pilotErrorDiag": "",
[2026-01-09 23:50:38]  *** Listing of results directory ***
[2026-01-09 23:50:38] total 443176
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 23:50:38] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc       100 Jan  9 21:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:50:38] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 21:59 run_atlas
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc       105 Jan  9 21:59 job.xml
[2026-01-09 23:50:38] -rw-r--r-- 2 boinc boinc 226709512 Jan  9 21:59 EVNT.47898824._001379.pool.root.1
[2026-01-09 23:50:38] -rw-r--r-- 2 boinc boinc    592401 Jan  9 21:59 input.tar.gz
[2026-01-09 23:50:38] -rw-r--r-- 2 boinc boinc     15847 Jan  9 21:59 start_atlas.sh
[2026-01-09 23:50:38] drwxrwx--x 2 boinc boinc      4096 Jan  9 21:59 shared
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc         0 Jan  9 21:59 boinc_setup_complete
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc      6439 Jan  9 21:59 init_data.xml
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc         0 Jan  9 21:59 boinc_lockfile
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc      2520 Jan  9 21:59 pandaJob.out
[2026-01-09 23:50:38] -rw------- 1 boinc boinc    989381 Jan  9 21:59 agis_schedconf.cvmfs.json
[2026-01-09 23:50:38] -rw------- 1 boinc boinc   1516240 Jan  9 21:59 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:50:38] drwx------ 5 boinc boinc      4096 Jan  9 21:59 pilot3
[2026-01-09 23:50:38] -rw------- 1 boinc boinc 220700898 Jan  9 23:49 HITS.47898826._035596.pool.root.1
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc       529 Jan  9 23:49 boinc_task_state.xml
[2026-01-09 23:50:38] -rw------- 1 boinc boinc      1021 Jan  9 23:49 memory_monitor_summary.json
[2026-01-09 23:50:38] -rw------- 1 boinc boinc        95 Jan  9 23:49 pilot_heartbeat.json
[2026-01-09 23:50:38] -rw------- 1 boinc boinc    290598 Jan  9 23:50 log.47898826._035596.job.log.tgz.1
[2026-01-09 23:50:38] -rw------- 1 boinc boinc      7773 Jan  9 23:50 heartbeat.json
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc      8192 Jan  9 23:50 boinc_mmap_file
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc        27 Jan  9 23:50 wrapper_checkpoint.txt
[2026-01-09 23:50:38] -rw------- 1 boinc boinc      4742 Jan  9 23:50 pilotlog.txt
[2026-01-09 23:50:38] -rw------- 1 boinc boinc    961084 Jan  9 23:50 log.47898826._035596.job.log.1
[2026-01-09 23:50:38] -rw------- 1 boinc boinc       357 Jan  9 23:50 output.list
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc       620 Jan  9 23:50 runtime_log
[2026-01-09 23:50:38] -rw------- 1 boinc boinc   1269760 Jan  9 23:50 result.tar.gz
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc      8897 Jan  9 23:50 runtime_log.err
[2026-01-09 23:50:38] -rw------- 1 boinc boinc       659 Jan  9 23:50 rTvMDmdzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbagKDm51PtVn.diag
[2026-01-09 23:50:38] -rw-r--r-- 1 boinc boinc      7795 Jan  9 23:50 stderr.txt
[2026-01-09 23:50:38] HITS file was successfully produced:
[2026-01-09 23:50:38] -rw------- 1 boinc boinc 220700898 Jan  9 23:49 shared/HITS.pool.root.1
[2026-01-09 23:50:38]  *** Contents of shared directory: ***
[2026-01-09 23:50:38] total 438776
[2026-01-09 23:50:38] -rw-r--r-- 2 boinc boinc 226709512 Jan  9 21:59 ATLAS.root_0
[2026-01-09 23:50:38] -rw-r--r-- 2 boinc boinc    592401 Jan  9 21:59 input.tar.gz
[2026-01-09 23:50:38] -rw-r--r-- 2 boinc boinc     15847 Jan  9 21:59 start_atlas.sh
[2026-01-09 23:50:38] -rw------- 1 boinc boinc 220700898 Jan  9 23:49 HITS.pool.root.1
[2026-01-09 23:50:38] -rw------- 1 boinc boinc   1269760 Jan  9 23:50 result.tar.gz
23:50:40 (1129846): run_atlas exited; CPU time 19201.589971
23:50:40 (1129846): called boinc_finish(0)

</stderr_txt>
]]>

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