Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:31:57 (672072): wrapper (7.7.26015): starting
09:31:57 (672072): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 09:31:57] Arguments: --nthreads 8
[2026-01-09 09:31:57] Threads: 8
[2026-01-09 09:31:57] Checking for CVMFS
[2026-01-09 09:31:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:31:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:31:58] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:32:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:32:00] 2.13.3.0 8635 23001 168768 154946 3 525 30962409 40960001 15749 16776704 0 35029694 99.752 21625330 38970 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 09:32:00] CVMFS is ok
[2026-01-09 09:32:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:32:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:32:00] Further information can be found at the LHC@home message board.
[2026-01-09 09:32:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:32:00] Checking for apptainer binary...
[2026-01-09 09:32:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:32:00] Running /usr/bin/apptainer --version
[2026-01-09 09:32:00] apptainer version 1.4.5-2.el9
[2026-01-09 09:32:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:32:01] c-212-8.aglt2.org
[2026-01-09 09:32:01] apptainer works
[2026-01-09 09:32:01] Set ATHENA_PROC_NUMBER=8
[2026-01-09 09:32:01] Set ATHENA_CORE_NUMBER=8
[2026-01-09 09:32:01] Starting ATLAS job with PandaID=6963166921
[2026-01-09 09:32:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:55:37]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:55:38] 2026-01-10 04:54:58,824 | INFO     | PID=675839 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:55:38] 2026-01-10 04:54:58,824 | INFO     | .. there are 15 such processes running
[2026-01-09 23:55:38] 2026-01-10 04:54:59,826 | INFO     | time since job start (51732s) is within the limit (349056.0s)
[2026-01-09 23:55:38] 2026-01-10 04:55:01,207 | INFO     | monitor loop #3475: job 0:6963166921 is in state 'finished'
[2026-01-09 23:55:38] 2026-01-10 04:55:01,209 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:55:38] 2026-01-10 04:55:01,835 | INFO     | time since job start (51734s) is within the limit (349056.0s)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,714 | INFO     | monitor loop #3476: job 0:6963166921 is in state 'finished'
[2026-01-09 23:55:38] 2026-01-10 04:55:03,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,820 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 23:55:38] 2026-01-10 04:55:03,828 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3167.884927083334
[2026-01-09 23:55:38] 2026-01-10 04:55:03,841 | INFO     | time since job start (51736s) is within the limit (349056.0s)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,845 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6963166921/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,846 | INFO     | extracted standard info from prmon json
[2026-01-09 23:55:38] 2026-01-10 04:55:03,846 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 23:55:38] 2026-01-10 04:55:03,846 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 23:55:38] 2026-01-10 04:55:03,846 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 23:55:38] 2026-01-10 04:55:03,846 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 23:55:38] 2026-01-10 04:55:03,857 | INFO     | fitting pss+swap vs Time
[2026-01-09 23:55:38] 2026-01-10 04:55:03,858 | INFO     | sum of square deviations: 188419134291.04865
[2026-01-09 23:55:38] 2026-01-10 04:55:03,882 | INFO     | sum of deviations: 228061082243.1895
[2026-01-09 23:55:38] 2026-01-10 04:55:03,882 | INFO     | mean x: 1767995068.059032
[2026-01-09 23:55:38] 2026-01-10 04:55:03,882 | INFO     | mean y: 2517046.5962219597
[2026-01-09 23:55:38] 2026-01-10 04:55:03,882 | INFO     | intersect: -2137450691.4962885
[2026-01-09 23:55:38] 2026-01-10 04:55:03,883 | INFO     | chi2: 2.993999418370708
[2026-01-09 23:55:38] 2026-01-10 04:55:03,883 | INFO     | sum of square deviations: 185101961763.5312
[2026-01-09 23:55:38] 2026-01-10 04:55:03,896 | INFO     | sum of deviations: 276744824613.66986
[2026-01-09 23:55:38] 2026-01-10 04:55:03,896 | INFO     | mean x: 1767994915.5593824
[2026-01-09 23:55:38] 2026-01-10 04:55:03,896 | INFO     | mean y: 2519272.8266033255
[2026-01-09 23:55:38] 2026-01-10 04:55:03,896 | INFO     | intersect: -2640799242.8863945
[2026-01-09 23:55:38] 2026-01-10 04:55:03,897 | INFO     | chi2: 2.3162265055224887
[2026-01-09 23:55:38] 2026-01-10 04:55:03,897 | INFO     | current chi2=2.3162265055224887 (change=22.637710237667772 %)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,897 | INFO     | right removable region: 841
[2026-01-09 23:55:38] 2026-01-10 04:55:03,898 | INFO     | sum of square deviations: 185101931263.5312
[2026-01-09 23:55:38] 2026-01-10 04:55:03,912 | INFO     | sum of deviations: 42384705104.00606
[2026-01-09 23:55:38] 2026-01-10 04:55:03,912 | INFO     | mean x: 1767995220.5593824
[2026-01-09 23:55:38] 2026-01-10 04:55:03,912 | INFO     | mean y: 2525566.549881235
[2026-01-09 23:55:38] 2026-01-10 04:55:03,912 | INFO     | intersect: -402310598.7844211
[2026-01-09 23:55:38] 2026-01-10 04:55:03,913 | INFO     | chi2: 0.8122522491130094
[2026-01-09 23:55:38] 2026-01-10 04:55:03,913 | INFO     | current chi2=0.8122522491130094 (change=72.87066109201098 %)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,913 | INFO     | sum of square deviations: 181823943000.13153
[2026-01-09 23:55:38] 2026-01-10 04:55:03,928 | INFO     | sum of deviations: 41410590769.95937
[2026-01-09 23:55:38] 2026-01-10 04:55:03,928 | INFO     | mean x: 1767995373.0585425
[2026-01-09 23:55:38] 2026-01-10 04:55:03,928 | INFO     | mean y: 2525609.3273596177
[2026-01-09 23:55:38] 2026-01-10 04:55:03,928 | INFO     | intersect: -400137162.52142817
[2026-01-09 23:55:38] 2026-01-10 04:55:03,929 | INFO     | chi2: 0.7963563646290643
[2026-01-09 23:55:38] 2026-01-10 04:55:03,929 | INFO     | current chi2=0.7963563646290643 (change=1.957013292521332 %)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,929 | INFO     | left removable region: 20
[2026-01-09 23:55:38] 2026-01-10 04:55:03,930 | INFO     | sum of square deviations: 171594723436.07578
[2026-01-09 23:55:38] 2026-01-10 04:55:03,943 | INFO     | sum of deviations: 129269023134.5261
[2026-01-09 23:55:38] 2026-01-10 04:55:03,943 | INFO     | mean x: 1767995495.0596833
[2026-01-09 23:55:38] 2026-01-10 04:55:03,943 | INFO     | mean y: 2525959.2545676003
[2026-01-09 23:55:38] 2026-01-10 04:55:03,943 | INFO     | intersect: -1329374264.5757344
[2026-01-09 23:55:38] 2026-01-10 04:55:03,944 | INFO     | chi2: 0.06392628699270854
[2026-01-09 23:55:38] 2026-01-10 04:55:03,944 | INFO     | current memory leak: 0.75 B/s (using 821 data points, chi2=0.06)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,944 | INFO     | could have reported an average CPU frequency of 3191 MHz (32 samples)
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | ..............................
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . Timing measurements:
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . get job = 0 s
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . initial setup = 6 s
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . payload setup = 24 s
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . stage-in = 0 s
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . payload execution = 51642 s
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . stage-out = 2 s
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | . log creation = 0 s
[2026-01-09 23:55:38] 2026-01-10 04:55:03,945 | INFO     | ..............................
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | 
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | job summary report
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | --------------------------------------------------
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | PanDA job id: 6963166921
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | task id: 47898826
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | errors: (none)
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | pilot state: finished 
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | transexitcode: 0
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | exeerrorcode: 0
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | exeerrordiag: 
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | exitcode: 0
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | exitmsg: OK
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | cpuconsumptiontime: 45168 s
[2026-01-09 23:55:38] 2026-01-10 04:55:04,223 | INFO     | nevents: 400
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | neventsw: 0
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | pid: 684243
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | pgrp: 684243
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | corecount: 8
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | event service: False
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | sizes: {0: 2283744, 1: 2283999, 12: 2283999, 16: 2284289, 24: 2284317, 51670: 2332830, 51673: 2341884, 51683: 2342022}
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | --------------------------------------------------
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | 
[2026-01-09 23:55:38] 2026-01-10 04:55:04,224 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-09 23:55:38] 2026-01-10 04:55:04,267 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,267 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 23:55:38] 2026-01-10 04:55:04,268 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,269 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 23:55:38] 2026-01-10 04:55:04,269 | INFO     | job 6963166921 has completed (purged errors)
[2026-01-09 23:55:38] 2026-01-10 04:55:04,269 | INFO     | overall cleanup function is called
[2026-01-09 23:55:38] 2026-01-10 04:55:05,278 | INFO     | --- collectZombieJob: --- 10, [684243]
[2026-01-09 23:55:38] 2026-01-10 04:55:05,278 | INFO     | zombie collector waiting for pid 684243
[2026-01-09 23:55:38] 2026-01-10 04:55:05,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 23:55:38] 2026-01-10 04:55:05,280 | INFO     | collected zombie processes
[2026-01-09 23:55:38] 2026-01-10 04:55:05,280 | INFO     | will attempt to kill all subprocesses of pid=684243
[2026-01-09 23:55:38] 2026-01-10 04:55:05,604 | INFO     | process IDs to be killed: [684243] (in reverse order)
[2026-01-09 23:55:38] 2026-01-10 04:55:05,981 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:55:38] 2026-01-10 04:55:05,981 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:55:38] 2026-01-10 04:55:05,993 | INFO     | did not find any defunct processes belonging to 684243
[2026-01-09 23:55:38] 2026-01-10 04:55:06,004 | INFO     | did not find any defunct processes belonging to 684243
[2026-01-09 23:55:38] 2026-01-10 04:55:06,005 | INFO     | ready for new job
[2026-01-09 23:55:38] 2026-01-10 04:55:06,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:55:38] 2026-01-10 04:55:06,008 | INFO     | ***************************************
[2026-01-09 23:55:38] 2026-01-10 04:55:06,008 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:55:38] 2026-01-10 04:55:06,008 | INFO     | ***************************************
[2026-01-09 23:55:38] 2026-01-10 04:55:06,008 | INFO     | 
[2026-01-09 23:55:38] 2026-01-10 04:55:06,013 | INFO     | architecture information:
[2026-01-09 23:55:38] 2026-01-10 04:55:06,013 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:55:38] 2026-01-10 04:55:06,049 | INFO     | cat /etc/os-release:
[2026-01-09 23:55:38] NAME="CentOS Linux"
[2026-01-09 23:55:38] VERSION="7 (Core)"
[2026-01-09 23:55:38] ID="centos"
[2026-01-09 23:55:38] ID_LIKE="rhel fedora"
[2026-01-09 23:55:38] VERSION_ID="7"
[2026-01-09 23:55:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:55:38] ANSI_COLOR="0;31"
[2026-01-09 23:55:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:55:38] HOME_URL="https://www.centos.org/"
[2026-01-09 23:55:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:55:38] 
[2026-01-09 23:55:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:55:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:55:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:55:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:55:38] 
[2026-01-09 23:55:38] 2026-01-10 04:55:06,049 | INFO     | ***************************************
[2026-01-09 23:55:38] 2026-01-10 04:55:06,553 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-09 23:55:38] 2026-01-10 04:55:06,580 | INFO     | sufficient remaining disk space (127026593792 B)
[2026-01-09 23:55:38] 2026-01-10 04:55:06,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:55:38] 2026-01-10 04:55:06,580 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:55:38] 2026-01-10 04:55:06,581 | INFO     | update_server=False
[2026-01-09 23:55:38] 2026-01-10 04:55:06,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:55:38] 2026-01-10 04:55:06,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:55:38] 2026-01-10 04:55:07,225 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:55:38] 2026-01-10 04:55:07,225 | INFO     | aborting loop
[2026-01-09 23:55:38] 2026-01-10 04:55:07,338 | INFO     | all data control threads have been joined
[2026-01-09 23:55:38] 2026-01-10 04:55:07,505 | INFO     | all job control threads have been joined
[2026-01-09 23:55:38] 2026-01-10 04:55:07,587 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:07,633 | INFO     | all payload control threads have been joined
[2026-01-09 23:55:38] 2026-01-10 04:55:07,740 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,120 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,231 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,346 | INFO     | [data] control thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,381 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,496 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:55:38] 2026-01-10 04:55:08,511 | INFO     | [job] control thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,587 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,639 | INFO     | [payload] control thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,732 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,817 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,821 | INFO     | [job] validate thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:08,928 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:09,060 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:55:38] 2026-01-10 04:55:09,063 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:10,066 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:12,505 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:55:38] 2026-01-10 04:55:16,567 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:55:38] 2026-01-10 04:55:17,152 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140362218895168)>', '<ExcThread(monitor, started 140361871648512)>']
[2026-01-09 23:55:38] 2026-01-10 04:55:22,177 | INFO     | all workflow threads have been joined
[2026-01-09 23:55:38] 2026-01-10 04:55:22,177 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:55:38] 2026-01-10 04:55:22,177 | INFO     | traces error code: 0
[2026-01-09 23:55:38] 2026-01-10 04:55:22,177 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:55:38] 2026-01-10 04:55:37,437 | INFO     | PID=675839 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 23:55:38] 2026-01-10 04:55:37,437 | INFO     | .. there are 15 such processes running
[2026-01-09 23:55:38] 2026-01-10 04:55:37,438 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:55:38] 2026-01-10 04:55:37,438 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:55:38] 2026-01-10 04:55:37,438 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:55:38] 2026-01-10 04:55:37,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:55:38] 2026-01-10 04:55:37,439 | INFO     | [monitor] control thread has ended
[2026-01-09 23:55:38] 2026-01-10 04:55:37,535 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:55:38] 2026-01-10 04:55:37,538 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:55:38] 2026-01-10 04:55:37,552 [wrapper] pilotpid: 675839
[2026-01-09 23:55:38] 2026-01-10 04:55:37,562 [wrapper] Pilot exit status: 0
[2026-01-09 23:55:38] 2026-01-10 04:55:37,600 [wrapper] pandaids: 6963166921
[2026-01-09 23:55:38] 2026-01-10 04:55:37,688 [wrapper] cleanup supervisor_pilot 2408844 675840
[2026-01-09 23:55:38] 2026-01-10 04:55:37,691 [wrapper] Test setup, not cleaning
[2026-01-09 23:55:38] 2026-01-10 04:55:37,693 [wrapper] apfmon messages muted
[2026-01-09 23:55:38] 2026-01-10 04:55:37,695 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:55:38] 2026-01-10 04:55:37,702 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:55:38]  *** Error codes and diagnostics ***
[2026-01-09 23:55:38]     "exeErrorCode": 0,
[2026-01-09 23:55:38]     "exeErrorDiag": "",
[2026-01-09 23:55:38]     "pilotErrorCode": 0,
[2026-01-09 23:55:38]     "pilotErrorDiag": "",
[2026-01-09 23:55:38]  *** Listing of results directory ***
[2026-01-09 23:55:38] total 460848
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 23:55:38] -rwx------. 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 19:57 queuedata.json
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas       100 Jan  9 09:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:55:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 09:31 run_atlas
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas       105 Jan  9 09:31 job.xml
[2026-01-09 23:55:38] -rw-r--r--. 2 boincer umatlas 228177540 Jan  9 09:31 EVNT.47898824._001369.pool.root.1
[2026-01-09 23:55:38] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 09:31 input.tar.gz
[2026-01-09 23:55:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:31 start_atlas.sh
[2026-01-09 23:55:38] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 09:31 shared
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas         0 Jan  9 09:31 boinc_lockfile
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 09:32 pandaJob.out
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas        57 Jan  9 09:32 setup.sh.local
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas    989377 Jan  9 09:32 agis_schedconf.cvmfs.json
[2026-01-09 23:55:38] drwx------. 5 boincer umatlas      4096 Jan  9 09:32 pilot3
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas      6954 Jan  9 23:46 init_data.xml
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas 224213755 Jan  9 23:53 HITS.47898826._035327.pool.root.1
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas       531 Jan  9 23:54 boinc_task_state.xml
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas      1030 Jan  9 23:54 memory_monitor_summary.json
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas   1516240 Jan  9 23:54 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas    948867 Jan  9 23:54 log.47898826._035327.job.log.tgz.1
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas      7775 Jan  9 23:55 heartbeat.json
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 23:55 boinc_mmap_file
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas        28 Jan  9 23:55 wrapper_checkpoint.txt
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas        95 Jan  9 23:55 pilot_heartbeat.json
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas       822 Jan  9 23:55 pilotlog.txt
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas   6850743 Jan  9 23:55 log.47898826._035327.job.log.1
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas       357 Jan  9 23:55 output.list
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas       620 Jan  9 23:55 runtime_log
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas   7823360 Jan  9 23:55 result.tar.gz
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas       656 Jan  9 23:55 WnTNDmRzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmtYgKDmpR7PUm.diag
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 23:55 runtime_log.err
[2026-01-09 23:55:38] -rw-r--r--. 1 boincer umatlas     21467 Jan  9 23:55 stderr.txt
[2026-01-09 23:55:38] HITS file was successfully produced:
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas 224213755 Jan  9 23:53 shared/HITS.pool.root.1
[2026-01-09 23:55:38]  *** Contents of shared directory: ***
[2026-01-09 23:55:38] total 450036
[2026-01-09 23:55:38] -rw-r--r--. 2 boincer umatlas 228177540 Jan  9 09:31 ATLAS.root_0
[2026-01-09 23:55:38] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 09:31 input.tar.gz
[2026-01-09 23:55:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:31 start_atlas.sh
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas 224213755 Jan  9 23:53 HITS.pool.root.1
[2026-01-09 23:55:38] -rw-------. 1 boincer umatlas   7823360 Jan  9 23:55 result.tar.gz
23:55:39 (672072): run_atlas exited; CPU time 47070.058205
23:55:39 (672072): called boinc_finish(0)

</stderr_txt>
]]>

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