Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:09:18 (29402): wrapper (7.7.26015): starting
09:09:18 (29402): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 09:09:18] Arguments: --nthreads 8
[2026-01-09 09:09:18] Threads: 8
[2026-01-09 09:09:18] Checking for CVMFS
[2026-01-09 09:09:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:09:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:09:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:09:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:09:18] 2.11.2.0 2840 131096 80476 154945 1 59 13170999 20275201 1 130560 0 31906148 99.817 8396175 30784 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 09:09:18] CVMFS is ok
[2026-01-09 09:09:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:09:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:09:18] Further information can be found at the LHC@home message board.
[2026-01-09 09:09:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:09:18] Checking for apptainer binary...
[2026-01-09 09:09:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:09:18] Running /usr/bin/apptainer --version
[2026-01-09 09:09:18] apptainer version 1.3.2-1.el7
[2026-01-09 09:09:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:09:20] c-204-39.aglt2.org
[2026-01-09 09:09:20] apptainer works
[2026-01-09 09:09:20] Set ATHENA_PROC_NUMBER=8
[2026-01-09 09:09:20] Set ATHENA_CORE_NUMBER=8
[2026-01-09 09:09:20] Starting ATLAS job with PandaID=6963165974
[2026-01-09 09:09:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:04:00]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:04:00] 2026-01-09 17:03:14,778 | INFO     | time since job start (10417s) is within the limit (349056.0s)
[2026-01-09 12:04:00] 2026-01-09 17:03:16,784 | INFO     | time since job start (10419s) is within the limit (349056.0s)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,019 | INFO     | monitor loop #784: job 0:6963165974 is in state 'finished'
[2026-01-09 12:04:00] 2026-01-09 17:03:17,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,556 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 12:04:00] 2026-01-09 17:03:17,560 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2026-01-09 12:04:00] 2026-01-09 17:03:17,562 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963165974/memory_monitor_output.txt (trf name=prmon)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,567 | INFO     | extracted standard info from memory monitor json
[2026-01-09 12:04:00] 2026-01-09 17:03:17,567 | WARNING  | standard memory fields were not found in memory monitor json (or json doesn't exist yet): 'totRCHAR'
[2026-01-09 12:04:00] 2026-01-09 17:03:17,568 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:04:00] 2026-01-09 17:03:17,568 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:04:00] 2026-01-09 17:03:17,570 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:04:00] 2026-01-09 17:03:17,571 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,572 | INFO     | sum of deviations: 19751090020.999992
[2026-01-09 12:04:00] 2026-01-09 17:03:17,572 | INFO     | mean x: 1767972260.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,572 | INFO     | mean y: 2483404.129251701
[2026-01-09 12:04:00] 2026-01-09 17:03:17,572 | INFO     | intersect: -35450777364.738655
[2026-01-09 12:04:00] 2026-01-09 17:03:17,572 | INFO     | chi2: 1.3470331338960715
[2026-01-09 12:04:00] 2026-01-09 17:03:17,573 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 12:04:00] 2026-01-09 17:03:17,573 | INFO     | sum of deviations: 19146703271.500004
[2026-01-09 12:04:00] 2026-01-09 17:03:17,573 | INFO     | mean x: 1767972107.5
[2026-01-09 12:04:00] 2026-01-09 17:03:17,573 | INFO     | mean y: 2482454.823943662
[2026-01-09 12:04:00] 2026-01-09 17:03:17,574 | INFO     | intersect: -38125822397.46613
[2026-01-09 12:04:00] 2026-01-09 17:03:17,574 | INFO     | chi2: 1.3479943930146623
[2026-01-09 12:04:00] 2026-01-09 17:03:17,574 | INFO     | current chi2=1.3479943930146623 (change=-0.07136120815458431 %)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,574 | INFO     | right removable region: 141
[2026-01-09 12:04:00] 2026-01-09 17:03:17,574 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 12:04:00] 2026-01-09 17:03:17,575 | INFO     | sum of deviations: -453427060.5000003
[2026-01-09 12:04:00] 2026-01-09 17:03:17,575 | INFO     | mean x: 1767972412.5
[2026-01-09 12:04:00] 2026-01-09 17:03:17,575 | INFO     | mean y: 2514590.556338028
[2026-01-09 12:04:00] 2026-01-09 17:03:17,575 | INFO     | intersect: 905458973.6370649
[2026-01-09 12:04:00] 2026-01-09 17:03:17,576 | INFO     | chi2: 0.03352307332816931
[2026-01-09 12:04:00] 2026-01-09 17:03:17,576 | INFO     | current chi2=0.03352307332816931 (change=97.5113401085236 %)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,576 | INFO     | sum of square deviations: 797291228.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,577 | INFO     | sum of deviations: -3157003882.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,577 | INFO     | mean x: 1767972565.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,577 | INFO     | mean y: 2519067.5547445253
[2026-01-09 12:04:00] 2026-01-09 17:03:17,577 | INFO     | intersect: 7003093079.858436
[2026-01-09 12:04:00] 2026-01-09 17:03:17,577 | INFO     | chi2: 0.003723367636287998
[2026-01-09 12:04:00] 2026-01-09 17:03:17,578 | INFO     | current chi2=0.003723367636287998 (change=88.8931196736092 %)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,578 | INFO     | sum of square deviations: 713140813.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,578 | INFO     | sum of deviations: -3134034179.5
[2026-01-09 12:04:00] 2026-01-09 17:03:17,579 | INFO     | mean x: 1767972717.5
[2026-01-09 12:04:00] 2026-01-09 17:03:17,579 | INFO     | mean y: 2519019.9015151514
[2026-01-09 12:04:00] 2026-01-09 17:03:17,579 | INFO     | intersect: 7772214463.020822
[2026-01-09 12:04:00] 2026-01-09 17:03:17,579 | INFO     | chi2: 0.0034752749122580577
[2026-01-09 12:04:00] 2026-01-09 17:03:17,579 | INFO     | current chi2=0.0034752749122580577 (change=6.66312726178379 %)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,579 | INFO     | left removable region: 30
[2026-01-09 12:04:00] 2026-01-09 17:03:17,580 | INFO     | sum of square deviations: 424045160.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,580 | INFO     | sum of deviations: -2136300581.0000007
[2026-01-09 12:04:00] 2026-01-09 17:03:17,580 | INFO     | mean x: 1767972992.0
[2026-01-09 12:04:00] 2026-01-09 17:03:17,580 | INFO     | mean y: 2517572.7117117117
[2026-01-09 12:04:00] 2026-01-09 17:03:17,581 | INFO     | intersect: 8909403174.240355
[2026-01-09 12:04:00] 2026-01-09 17:03:17,581 | INFO     | chi2: 0.003363498574664153
[2026-01-09 12:04:00] 2026-01-09 17:03:17,581 | INFO     | current memory leak: -5.04 B/s (using 111 data points, chi2=0.00)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,581 | INFO     | could have reported an average CPU frequency of 2032 MHz (9 samples)
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | ..............................
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . Timing measurements:
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . get job = 0 s
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . initial setup = 2 s
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . payload setup = 7 s
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . stage-in = 0 s
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . payload execution = 10320 s
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . stage-out = 0 s
[2026-01-09 12:04:00] 2026-01-09 17:03:17,582 | INFO     | . log creation = 0 s
[2026-01-09 12:04:00] 2026-01-09 17:03:17,583 | INFO     | ..............................
[2026-01-09 12:04:00] 2026-01-09 17:03:18,027 | INFO     | 
[2026-01-09 12:04:00] 2026-01-09 17:03:18,028 | INFO     | job summary report
[2026-01-09 12:04:00] 2026-01-09 17:03:18,028 | INFO     | --------------------------------------------------
[2026-01-09 12:04:00] 2026-01-09 17:03:18,028 | INFO     | PanDA job id: 6963165974
[2026-01-09 12:04:00] 2026-01-09 17:03:18,028 | INFO     | task id: 47898826
[2026-01-09 12:04:00] 2026-01-09 17:03:18,028 | INFO     | errors: (none)
[2026-01-09 12:04:00] 2026-01-09 17:03:18,028 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:04:00] 2026-01-09 17:03:18,029 | INFO     | pilot state: finished 
[2026-01-09 12:04:00] 2026-01-09 17:03:18,029 | INFO     | transexitcode: 0
[2026-01-09 12:04:00] 2026-01-09 17:03:18,029 | INFO     | exeerrorcode: 0
[2026-01-09 12:04:00] 2026-01-09 17:03:18,029 | INFO     | exeerrordiag: 
[2026-01-09 12:04:00] 2026-01-09 17:03:18,029 | INFO     | exitcode: 0
[2026-01-09 12:04:00] 2026-01-09 17:03:18,030 | INFO     | exitmsg: OK
[2026-01-09 12:04:00] 2026-01-09 17:03:18,030 | INFO     | cpuconsumptiontime: 78010 s
[2026-01-09 12:04:00] 2026-01-09 17:03:18,030 | INFO     | nevents: 400
[2026-01-09 12:04:00] 2026-01-09 17:03:18,030 | INFO     | neventsw: 0
[2026-01-09 12:04:00] 2026-01-09 17:03:18,030 | INFO     | pid: 7586
[2026-01-09 12:04:00] 2026-01-09 17:03:18,030 | INFO     | pgrp: 7586
[2026-01-09 12:04:00] 2026-01-09 17:03:18,031 | INFO     | corecount: 8
[2026-01-09 12:04:00] 2026-01-09 17:03:18,031 | INFO     | event service: False
[2026-01-09 12:04:00] 2026-01-09 17:03:18,031 | INFO     | sizes: {0: 2283800, 1: 2283999, 6: 2284261, 11: 2284289, 10392: 2312985, 10393: 2321983, 10396: 2322167, 10404: 2322425}
[2026-01-09 12:04:00] 2026-01-09 17:03:18,031 | INFO     | --------------------------------------------------
[2026-01-09 12:04:00] 2026-01-09 17:03:18,031 | INFO     | 
[2026-01-09 12:04:00] 2026-01-09 17:03:18,031 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 12:04:00] 2026-01-09 17:03:18,060 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,061 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,061 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,061 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,062 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,062 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,062 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,063 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,063 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,064 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:04:00] 2026-01-09 17:03:18,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,064 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:04:00] 2026-01-09 17:03:18,065 | INFO     | job 6963165974 has completed (purged errors)
[2026-01-09 12:04:00] 2026-01-09 17:03:18,065 | INFO     | overall cleanup function is called
[2026-01-09 12:04:00] 2026-01-09 17:03:19,074 | INFO     | --- collectZombieJob: --- 10, [7586]
[2026-01-09 12:04:00] 2026-01-09 17:03:19,074 | INFO     | zombie collector waiting for pid 7586
[2026-01-09 12:04:00] 2026-01-09 17:03:19,074 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:04:00] 2026-01-09 17:03:19,074 | INFO     | collected zombie processes
[2026-01-09 12:04:00] 2026-01-09 17:03:19,075 | INFO     | will attempt to kill all subprocesses of pid=7586
[2026-01-09 12:04:00] 2026-01-09 17:03:19,163 | INFO     | process IDs to be killed: [7586] (in reverse order)
[2026-01-09 12:04:00] 2026-01-09 17:03:19,219 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:04:00] 2026-01-09 17:03:19,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:04:00] 2026-01-09 17:03:19,224 | INFO     | did not find any defunct processes belonging to 7586
[2026-01-09 12:04:00] 2026-01-09 17:03:19,227 | INFO     | did not find any defunct processes belonging to 7586
[2026-01-09 12:04:00] 2026-01-09 17:03:19,228 | INFO     | ready for new job
[2026-01-09 12:04:00] 2026-01-09 17:03:19,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:04:00] 2026-01-09 17:03:19,230 | INFO     | ***************************************
[2026-01-09 12:04:00] 2026-01-09 17:03:19,230 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:04:00] 2026-01-09 17:03:19,230 | INFO     | ***************************************
[2026-01-09 12:04:00] 2026-01-09 17:03:19,231 | INFO     | 
[2026-01-09 12:04:00] 2026-01-09 17:03:19,231 | INFO     | architecture information:
[2026-01-09 12:04:00] 2026-01-09 17:03:19,232 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:04:00] 2026-01-09 17:03:19,250 | INFO     | cat /etc/os-release:
[2026-01-09 12:04:00] NAME="CentOS Linux"
[2026-01-09 12:04:00] VERSION="7 (Core)"
[2026-01-09 12:04:00] ID="centos"
[2026-01-09 12:04:00] ID_LIKE="rhel fedora"
[2026-01-09 12:04:00] VERSION_ID="7"
[2026-01-09 12:04:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:04:00] ANSI_COLOR="0;31"
[2026-01-09 12:04:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:04:00] HOME_URL="https://www.centos.org/"
[2026-01-09 12:04:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:04:00] 
[2026-01-09 12:04:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:04:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:04:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:04:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:04:00] 
[2026-01-09 12:04:00] 2026-01-09 17:03:19,250 | INFO     | ***************************************
[2026-01-09 12:04:00] 2026-01-09 17:03:19,753 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 12:04:00] 2026-01-09 17:03:19,773 | INFO     | sufficient remaining disk space (18500026368 B)
[2026-01-09 12:04:00] 2026-01-09 17:03:19,774 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:04:00] 2026-01-09 17:03:19,774 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:04:00] 2026-01-09 17:03:19,774 | INFO     | update_server=False
[2026-01-09 12:04:00] 2026-01-09 17:03:19,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:04:00] 2026-01-09 17:03:19,883 | INFO     | all payload control threads have been joined
[2026-01-09 12:04:00] 2026-01-09 17:03:19,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:04:00] 2026-01-09 17:03:19,969 | INFO     | all data control threads have been joined
[2026-01-09 12:04:00] 2026-01-09 17:03:20,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:04:00] 2026-01-09 17:03:20,528 | INFO     | aborting loop
[2026-01-09 12:04:00] 2026-01-09 17:03:20,780 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:20,848 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:20,888 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:04:00] 2026-01-09 17:03:20,889 | INFO     | [payload] control thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:20,925 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:20,975 | INFO     | [data] control thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:21,308 | INFO     | all job control threads have been joined
[2026-01-09 12:04:00] 2026-01-09 17:03:21,326 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:21,533 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:21,610 | INFO     | [job] validate thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:21,844 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:21,958 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:21,977 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:22,160 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:22,214 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:22,313 | INFO     | [job] control thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:22,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:04:00] 2026-01-09 17:03:23,690 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:24,890 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:04:00] 2026-01-09 17:03:50,007 | INFO     | PID=622 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-09 12:04:00] 2026-01-09 17:03:50,007 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:04:00] 2026-01-09 17:03:50,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:04:00] 2026-01-09 17:03:50,007 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:04:00] 2026-01-09 17:03:54,295 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:04:00] 2026-01-09 17:03:55,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139792714471232)>', '<ExcThread(monitor, started 139791832172288)>']
[2026-01-09 12:04:00] 2026-01-09 17:03:56,037 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:04:00] 2026-01-09 17:03:56,037 | INFO     | [monitor] control thread has ended
[2026-01-09 12:04:00] 2026-01-09 17:04:00,514 | INFO     | all workflow threads have been joined
[2026-01-09 12:04:00] 2026-01-09 17:04:00,514 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:04:00] 2026-01-09 17:04:00,522 | INFO     | traces error code: 0
[2026-01-09 12:04:00] 2026-01-09 17:04:00,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:04:00] 2026-01-09 17:04:00,635 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:04:00] 2026-01-09 17:04:00,639 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:04:00] 2026-01-09 17:04:00,642 [wrapper] pilotpid: 622
[2026-01-09 12:04:00] 2026-01-09 17:04:00,646 [wrapper] Pilot exit status: 0
[2026-01-09 12:04:00] 2026-01-09 17:04:00,666 [wrapper] pandaids: 6963165974
[2026-01-09 12:04:00] 2026-01-09 17:04:00,709 [wrapper] cleanup supervisor_pilot 24011 623
[2026-01-09 12:04:00] 2026-01-09 17:04:00,713 [wrapper] Test setup, not cleaning
[2026-01-09 12:04:00] 2026-01-09 17:04:00,718 [wrapper] apfmon messages muted
[2026-01-09 12:04:00] 2026-01-09 17:04:00,722 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:04:00] 2026-01-09 17:04:00,726 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:04:00]  *** Error codes and diagnostics ***
[2026-01-09 12:04:00]     "exeErrorCode": 0,
[2026-01-09 12:04:00]     "exeErrorDiag": "",
[2026-01-09 12:04:00]     "pilotErrorCode": 0,
[2026-01-09 12:04:00]     "pilotErrorDiag": "",
[2026-01-09 12:04:00]  *** Listing of results directory ***
[2026-01-09 12:04:00] total 442916
[2026-01-09 12:04:00] -rwx------ 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:57 queuedata.json
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas       100 Jan  9 09:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:04:00] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 09:09 run_atlas
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas       105 Jan  9 09:09 job.xml
[2026-01-09 12:04:00] -rw-r--r-- 2 boincer umatlas 224522922 Jan  9 09:09 EVNT.47898824._001359.pool.root.1
[2026-01-09 12:04:00] -rw-r--r-- 2 boincer umatlas    592398 Jan  9 09:09 input.tar.gz
[2026-01-09 12:04:00] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 09:09 start_atlas.sh
[2026-01-09 12:04:00] drwxrwx--x 2 boincer umatlas      4096 Jan  9 09:09 shared
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas         0 Jan  9 09:09 boinc_lockfile
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 09:09 pandaJob.out
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas        57 Jan  9 09:09 setup.sh.local
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas    989377 Jan  9 09:09 agis_schedconf.cvmfs.json
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas   1516240 Jan  9 09:09 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:04:00] drwx------ 5 boincer umatlas      4096 Jan  9 09:09 pilot3
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas 221347196 Jan  9 12:01 HITS.47898826._035087.pool.root.1
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas       530 Jan  9 12:01 boinc_task_state.xml
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas      5911 Jan  9 12:01 init_data.xml
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas    433949 Jan  9 12:03 log.47898826._035087.job.log.tgz.1
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas        95 Jan  9 12:03 pilot_heartbeat.json
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas      7588 Jan  9 12:03 heartbeat.json
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas        28 Jan  9 12:03 wrapper_checkpoint.txt
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 12:03 boinc_mmap_file
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas      4744 Jan  9 12:04 pilotlog.txt
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas   1448544 Jan  9 12:04 log.47898826._035087.job.log.1
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas       357 Jan  9 12:04 output.list
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas       620 Jan  9 12:04 runtime_log
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas   1904640 Jan  9 12:04 result.tar.gz
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 12:04 runtime_log.err
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas       662 Jan  9 12:04 iDTNDmPzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1llKDmhWMYDm.diag
[2026-01-09 12:04:00] -rw-r--r-- 1 boincer umatlas     21171 Jan  9 12:04 stderr.txt
[2026-01-09 12:04:00] HITS file was successfully produced:
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas 221347196 Jan  9 12:01 shared/HITS.pool.root.1
[2026-01-09 12:04:00]  *** Contents of shared directory: ***
[2026-01-09 12:04:00] total 437884
[2026-01-09 12:04:00] -rw-r--r-- 2 boincer umatlas 224522922 Jan  9 09:09 ATLAS.root_0
[2026-01-09 12:04:00] -rw-r--r-- 2 boincer umatlas    592398 Jan  9 09:09 input.tar.gz
[2026-01-09 12:04:00] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 09:09 start_atlas.sh
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas 221347196 Jan  9 12:01 HITS.pool.root.1
[2026-01-09 12:04:00] -rw------- 1 boincer umatlas   1904640 Jan  9 12:04 result.tar.gz
12:04:02 (29402): run_atlas exited; CPU time 77976.184879
12:04:02 (29402): called boinc_finish(0)

</stderr_txt>
]]>

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