Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:01 (1356883): wrapper (7.7.26015): starting
00:02:01 (1356883): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 00:02:01] Arguments: --nthreads 12
[2026-01-10 00:02:01] Threads: 12
[2026-01-10 00:02:01] Checking for CVMFS
[2026-01-10 00:02:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:02:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:02:03] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:02:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:02:06] 2.13.3.0 13071 31071 250448 154968 3 343 23918023 32935936 20601 16776704 0 28070990 99.743 25814822 14454 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 00:02:06] CVMFS is ok
[2026-01-10 00:02:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:02:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:02:06] Further information can be found at the LHC@home message board.
[2026-01-10 00:02:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:02:06] Checking for apptainer binary...
[2026-01-10 00:02:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:02:06] Running /usr/bin/apptainer --version
[2026-01-10 00:02:06] apptainer version 1.4.5-2.el9
[2026-01-10 00:02:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:02:08] c6-12-25-1.aglt2.org
[2026-01-10 00:02:08] apptainer works
[2026-01-10 00:02:08] Set ATHENA_PROC_NUMBER=12
[2026-01-10 00:02:08] Set ATHENA_CORE_NUMBER=12
[2026-01-10 00:02:08] Starting ATLAS job with PandaID=6963167011
[2026-01-10 00:02:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:45:38]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:45:38] 2026-01-10 17:44:54,651 | INFO     | sum of square deviations: 127707069519.41348
[2026-01-10 12:45:38] 2026-01-10 17:44:54,732 | INFO     | monitor loop #2009: job 0:6963167011 is in state 'finished'
[2026-01-10 12:45:38] 2026-01-10 17:44:54,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:45:38] 2026-01-10 17:44:54,894 | INFO     | sum of deviations: 958057138894.1718
[2026-01-10 12:45:38] 2026-01-10 17:44:54,895 | INFO     | mean x: 1768044323.2392473
[2026-01-10 12:45:38] 2026-01-10 17:44:54,895 | INFO     | mean y: 2601263.5215053763
[2026-01-10 12:45:38] 2026-01-10 17:44:54,895 | INFO     | intersect: -13261249298.04179
[2026-01-10 12:45:38] 2026-01-10 17:44:54,920 | INFO     | chi2: 12.504567064862186
[2026-01-10 12:45:38] 2026-01-10 17:44:54,946 | INFO     | sum of square deviations: 125149823247.15042
[2026-01-10 12:45:38] 2026-01-10 17:44:55,173 | INFO     | sum of deviations: 1158318302667.7375
[2026-01-10 12:45:38] 2026-01-10 17:44:55,173 | INFO     | mean x: 1768044170.7428958
[2026-01-10 12:45:38] 2026-01-10 17:44:55,173 | INFO     | mean y: 2613190.188092016
[2026-01-10 12:45:38] 2026-01-10 17:44:55,174 | INFO     | intersect: -16361436472.527908
[2026-01-10 12:45:38] 2026-01-10 17:44:55,190 | INFO     | chi2: 9.57072067495982
[2026-01-10 12:45:38] 2026-01-10 17:44:55,191 | INFO     | current chi2=9.57072067495982 (change=23.462198848502887 %)
[2026-01-10 12:45:38] 2026-01-10 17:44:55,191 | INFO     | right removable region: 738
[2026-01-10 12:45:38] 2026-01-10 17:44:55,208 | INFO     | sum of square deviations: 125149578027.15038
[2026-01-10 12:45:38] 2026-01-10 17:44:55,369 | INFO     | sum of deviations: 705101629616.574
[2026-01-10 12:45:38] 2026-01-10 17:44:55,370 | INFO     | mean x: 1768044475.7428958
[2026-01-10 12:45:38] 2026-01-10 17:44:55,370 | INFO     | mean y: 2616340.8714479026
[2026-01-10 12:45:38] 2026-01-10 17:44:55,370 | INFO     | intersect: -9958672068.830135
[2026-01-10 12:45:38] 2026-01-10 17:44:55,387 | INFO     | chi2: 8.629345581279239
[2026-01-10 12:45:38] 2026-01-10 17:44:55,387 | INFO     | current chi2=8.629345581279239 (change=30.99044903739462 %)
[2026-01-10 12:45:38] 2026-01-10 17:44:55,404 | INFO     | sum of square deviations: 122626504717.85596
[2026-01-10 12:45:38] 2026-01-10 17:44:55,551 | INFO     | sum of deviations: 494827969935.7533
[2026-01-10 12:45:38] 2026-01-10 17:44:55,551 | INFO     | mean x: 1768044628.2452316
[2026-01-10 12:45:38] 2026-01-10 17:44:55,552 | INFO     | mean y: 2629048.501362398
[2026-01-10 12:45:38] 2026-01-10 17:44:55,552 | INFO     | intersect: -7131863907.677696
[2026-01-10 12:45:38] 2026-01-10 17:44:55,554 | INFO     | chi2: 6.077818084584308
[2026-01-10 12:45:38] 2026-01-10 17:44:55,555 | INFO     | current chi2=6.077818084584308 (change=29.568030074381202 %)
[2026-01-10 12:45:38] 2026-01-10 17:44:55,557 | INFO     | sum of square deviations: 120137615870.05199
[2026-01-10 12:45:38] 2026-01-10 17:44:55,589 | INFO     | sum of deviations: 329946059938.8373
[2026-01-10 12:45:38] 2026-01-10 17:44:55,589 | INFO     | mean x: 1768044780.7462277
[2026-01-10 12:45:38] 2026-01-10 17:44:55,590 | INFO     | mean y: 2639147.0315500684
[2026-01-10 12:45:38] 2026-01-10 17:44:55,590 | INFO     | intersect: -4853120682.875842
[2026-01-10 12:45:38] 2026-01-10 17:44:55,592 | INFO     | chi2: 4.541486737443395
[2026-01-10 12:45:38] 2026-01-10 17:44:55,592 | INFO     | current chi2=4.541486737443395 (change=25.277679024938937 %)
[2026-01-10 12:45:38] 2026-01-10 17:44:55,594 | INFO     | sum of square deviations: 117682546183.75
[2026-01-10 12:45:38] 2026-01-10 17:44:55,685 | INFO     | sum of deviations: 231110432048.74976
[2026-01-10 12:45:38] 2026-01-10 17:44:55,686 | INFO     | mean x: 1768044933.25
[2026-01-10 12:45:38] 2026-01-10 17:44:55,686 | INFO     | mean y: 2645280.885359116
[2026-01-10 12:45:38] 2026-01-10 17:44:55,686 | INFO     | intersect: -3469523206.7593546
[2026-01-10 12:45:38] 2026-01-10 17:44:55,693 | INFO     | chi2: 3.9878378702060413
[2026-01-10 12:45:38] 2026-01-10 17:44:55,693 | INFO     | current chi2=3.9878378702060413 (change=12.190916746990819 %)
[2026-01-10 12:45:38] 2026-01-10 17:44:55,694 | INFO     | left removable region: 40
[2026-01-10 12:45:38] 2026-01-10 17:44:55,700 | INFO     | sum of square deviations: 105454120385.36395
[2026-01-10 12:45:38] 2026-01-10 17:44:55,794 | INFO     | sum of deviations: 191118553926.5387
[2026-01-10 12:45:38] 2026-01-10 17:44:55,795 | INFO     | mean x: 1768045360.269341
[2026-01-10 12:45:38] 2026-01-10 17:44:55,795 | INFO     | mean y: 2673380.4971346706
[2026-01-10 12:45:38] 2026-01-10 17:44:55,795 | INFO     | intersect: -3201623154.3028545
[2026-01-10 12:45:38] 2026-01-10 17:44:55,801 | INFO     | chi2: 0.2038596569603323
[2026-01-10 12:45:38] 2026-01-10 17:44:55,802 | INFO     | current memory leak: 1.81 B/s (using 698 data points, chi2=0.20)
[2026-01-10 12:45:38] 2026-01-10 17:44:55,804 | INFO     | could have reported an average CPU frequency of 1000 MHz (28 samples)
[2026-01-10 12:45:38] 2026-01-10 17:44:55,809 | INFO     | ..............................
[2026-01-10 12:45:38] 2026-01-10 17:44:55,810 | INFO     | . Timing measurements:
[2026-01-10 12:45:38] 2026-01-10 17:44:55,810 | INFO     | . get job = 0 s
[2026-01-10 12:45:38] 2026-01-10 17:44:55,810 | INFO     | . initial setup = 14 s
[2026-01-10 12:45:38] 2026-01-10 17:44:55,810 | INFO     | . payload setup = 68 s
[2026-01-10 12:45:38] 2026-01-10 17:44:55,810 | INFO     | . stage-in = 1 s
[2026-01-10 12:45:38] 2026-01-10 17:44:55,810 | INFO     | . payload execution = 45409 s
[2026-01-10 12:45:38] 2026-01-10 17:44:55,811 | INFO     | . stage-out = 13 s
[2026-01-10 12:45:38] 2026-01-10 17:44:55,811 | INFO     | . log creation = 3 s
[2026-01-10 12:45:38] 2026-01-10 17:44:55,811 | INFO     | ..............................
[2026-01-10 12:45:38] 2026-01-10 17:44:57,059 | INFO     | 
[2026-01-10 12:45:38] 2026-01-10 17:44:57,060 | INFO     | job summary report
[2026-01-10 12:45:38] 2026-01-10 17:44:57,060 | INFO     | --------------------------------------------------
[2026-01-10 12:45:38] 2026-01-10 17:44:57,061 | INFO     | PanDA job id: 6963167011
[2026-01-10 12:45:38] 2026-01-10 17:44:57,061 | INFO     | task id: 47898826
[2026-01-10 12:45:38] 2026-01-10 17:44:57,061 | INFO     | errors: (none)
[2026-01-10 12:45:38] 2026-01-10 17:44:57,061 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:45:38] 2026-01-10 17:44:57,061 | INFO     | pilot state: finished 
[2026-01-10 12:45:38] 2026-01-10 17:44:57,061 | INFO     | transexitcode: 0
[2026-01-10 12:45:38] 2026-01-10 17:44:57,062 | INFO     | exeerrorcode: 0
[2026-01-10 12:45:38] 2026-01-10 17:44:57,062 | INFO     | exeerrordiag: 
[2026-01-10 12:45:38] 2026-01-10 17:44:57,062 | INFO     | exitcode: 0
[2026-01-10 12:45:38] 2026-01-10 17:44:57,062 | INFO     | exitmsg: OK
[2026-01-10 12:45:38] 2026-01-10 17:44:57,062 | INFO     | cpuconsumptiontime: 150011 s
[2026-01-10 12:45:38] 2026-01-10 17:44:57,062 | INFO     | nevents: 400
[2026-01-10 12:45:38] 2026-01-10 17:44:57,063 | INFO     | neventsw: 0
[2026-01-10 12:45:38] 2026-01-10 17:44:57,063 | INFO     | pid: 1373157
[2026-01-10 12:45:38] 2026-01-10 17:44:57,063 | INFO     | pgrp: 1373157
[2026-01-10 12:45:38] 2026-01-10 17:44:57,063 | INFO     | corecount: 12
[2026-01-10 12:45:38] 2026-01-10 17:44:57,063 | INFO     | event service: False
[2026-01-10 12:45:38] 2026-01-10 17:44:57,063 | INFO     | sizes: {0: 2283143, 1: 2283744, 2: 2283828, 3: 2283884, 4: 2284055, 5: 2284083, 16: 2284267, 29: 2284295, 40: 2284323, 48: 2284613, 53: 2284641, 45484: 2328072, 45
[2026-01-10 12:45:38] 2026-01-10 17:44:57,117 | INFO     | --------------------------------------------------
[2026-01-10 12:45:38] 2026-01-10 17:44:57,117 | INFO     | 
[2026-01-10 12:45:38] 2026-01-10 17:44:57,118 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-10 12:45:38] 2026-01-10 17:44:57,581 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,601 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,601 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,601 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,601 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,601 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,602 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,602 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,602 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,602 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,602 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,603 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,603 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,603 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,603 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,603 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,603 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,604 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:45:38] 2026-01-10 17:44:57,604 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,604 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:45:38] 2026-01-10 17:44:57,604 | INFO     | job 6963167011 has completed (purged errors)
[2026-01-10 12:45:38] 2026-01-10 17:44:57,605 | INFO     | overall cleanup function is called
[2026-01-10 12:45:38] 2026-01-10 17:44:58,702 | INFO     | --- collectZombieJob: --- 10, [1373157]
[2026-01-10 12:45:38] 2026-01-10 17:44:58,702 | INFO     | zombie collector waiting for pid 1373157
[2026-01-10 12:45:38] 2026-01-10 17:44:58,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:45:38] 2026-01-10 17:44:58,703 | INFO     | collected zombie processes
[2026-01-10 12:45:38] 2026-01-10 17:44:58,703 | INFO     | will attempt to kill all subprocesses of pid=1373157
[2026-01-10 12:45:38] 2026-01-10 17:44:58,945 | INFO     | PID=1362738 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:45:38] 2026-01-10 17:44:58,945 | INFO     | .. there are 16 such processes running
[2026-01-10 12:45:38] 2026-01-10 17:45:00,570 | INFO     | process IDs to be killed: [1373157] (in reverse order)
[2026-01-10 12:45:38] 2026-01-10 17:45:00,843 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:45:38] 2026-01-10 17:45:00,844 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:45:38] 2026-01-10 17:45:00,970 | INFO     | did not find any defunct processes belonging to 1373157
[2026-01-10 12:45:38] 2026-01-10 17:45:01,003 | INFO     | did not find any defunct processes belonging to 1373157
[2026-01-10 12:45:38] 2026-01-10 17:45:01,004 | INFO     | ready for new job
[2026-01-10 12:45:38] 2026-01-10 17:45:01,004 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:45:38] 2026-01-10 17:45:01,031 | INFO     | ***************************************
[2026-01-10 12:45:38] 2026-01-10 17:45:01,045 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:45:38] 2026-01-10 17:45:01,046 | INFO     | ***************************************
[2026-01-10 12:45:38] 2026-01-10 17:45:01,046 | INFO     | 
[2026-01-10 12:45:38] 2026-01-10 17:45:01,115 | INFO     | architecture information:
[2026-01-10 12:45:38] 2026-01-10 17:45:01,120 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:45:38] 2026-01-10 17:45:01,238 | INFO     | cat /etc/os-release:
[2026-01-10 12:45:38] NAME="CentOS Linux"
[2026-01-10 12:45:38] VERSION="7 (Core)"
[2026-01-10 12:45:38] ID="centos"
[2026-01-10 12:45:38] ID_LIKE="rhel fedora"
[2026-01-10 12:45:38] VERSION_ID="7"
[2026-01-10 12:45:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:45:38] ANSI_COLOR="0;31"
[2026-01-10 12:45:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:45:38] HOME_URL="https://www.centos.org/"
[2026-01-10 12:45:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:45:38] 
[2026-01-10 12:45:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:45:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:45:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:45:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:45:38] 
[2026-01-10 12:45:38] 2026-01-10 17:45:01,239 | INFO     | ***************************************
[2026-01-10 12:45:38] 2026-01-10 17:45:01,743 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-10 12:45:38] 2026-01-10 17:45:01,856 | INFO     | sufficient remaining disk space (73188507648 B)
[2026-01-10 12:45:38] 2026-01-10 17:45:01,856 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:45:38] 2026-01-10 17:45:01,857 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:45:38] 2026-01-10 17:45:01,857 | INFO     | update_server=False
[2026-01-10 12:45:38] 2026-01-10 17:45:01,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:45:38] 2026-01-10 17:45:01,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:45:38] 2026-01-10 17:45:01,859 | INFO     | aborting loop
[2026-01-10 12:45:38] 2026-01-10 17:45:01,870 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:45:38] 2026-01-10 17:45:02,075 | INFO     | all data control threads have been joined
[2026-01-10 12:45:38] 2026-01-10 17:45:02,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:45:38] 2026-01-10 17:45:02,587 | INFO     | all job control threads have been joined
[2026-01-10 12:45:38] 2026-01-10 17:45:02,685 | INFO     | all payload control threads have been joined
[2026-01-10 12:45:38] 2026-01-10 17:45:02,864 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:02,871 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:02,876 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,081 | INFO     | [data] control thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,178 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,593 | INFO     | [job] control thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,616 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,691 | INFO     | [payload] control thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,707 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,785 | INFO     | [job] validate thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,791 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:03,792 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:04,154 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:04,260 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:04,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:45:38] 2026-01-10 17:45:04,592 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:08,567 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:45:38] 2026-01-10 17:45:30,190 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:45:38] 2026-01-10 17:45:31,542 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140480597043008)>', '<ExcThread(monitor, started 140480226506496)>']
[2026-01-10 12:45:38] 2026-01-10 17:45:32,652 | INFO     | PID=1362738 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:45:38] 2026-01-10 17:45:32,652 | INFO     | .. there are 16 such processes running
[2026-01-10 12:45:38] 2026-01-10 17:45:32,654 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:45:38] 2026-01-10 17:45:32,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:45:38] 2026-01-10 17:45:32,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:45:38] 2026-01-10 17:45:32,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:45:38] 2026-01-10 17:45:32,655 | INFO     | [monitor] control thread has ended
[2026-01-10 12:45:38] 2026-01-10 17:45:36,568 | INFO     | all workflow threads have been joined
[2026-01-10 12:45:38] 2026-01-10 17:45:36,568 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:45:38] 2026-01-10 17:45:36,569 | INFO     | traces error code: 0
[2026-01-10 12:45:38] 2026-01-10 17:45:36,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:45:38] 2026-01-10 17:45:36,944 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:45:38] 2026-01-10 17:45:36,950 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:45:38] 2026-01-10 17:45:36,956 [wrapper] pilotpid: 1362738
[2026-01-10 12:45:38] 2026-01-10 17:45:36,961 [wrapper] Pilot exit status: 0
[2026-01-10 12:45:38] 2026-01-10 17:45:37,011 [wrapper] pandaids: 6963167011
[2026-01-10 12:45:38] 2026-01-10 17:45:37,345 [wrapper] cleanup supervisor_pilot 3060646 1362739
[2026-01-10 12:45:38] 2026-01-10 17:45:37,351 [wrapper] Test setup, not cleaning
[2026-01-10 12:45:38] 2026-01-10 17:45:37,404 [wrapper] apfmon messages muted
[2026-01-10 12:45:38] 2026-01-10 17:45:37,470 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:45:38] 2026-01-10 17:45:37,477 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:45:38]  *** Error codes and diagnostics ***
[2026-01-10 12:45:38]     "exeErrorCode": 0,
[2026-01-10 12:45:38]     "exeErrorDiag": "",
[2026-01-10 12:45:38]     "pilotErrorCode": 0,
[2026-01-10 12:45:38]     "pilotErrorDiag": "",
[2026-01-10 12:45:38]  *** Listing of results directory ***
[2026-01-10 12:45:38] total 444996
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-10 12:45:38] -rwx------. 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 19:57 queuedata.json
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas       100 Jan 10 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:45:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 00:02 run_atlas
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas       105 Jan 10 00:02 job.xml
[2026-01-10 12:45:38] -rw-r--r--. 2 boincer umatlas 223555343 Jan 10 00:02 EVNT.47898824._001372.pool.root.1
[2026-01-10 12:45:38] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 00:02 start_atlas.sh
[2026-01-10 12:45:38] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 00:02 shared
[2026-01-10 12:45:38] -rw-r--r--. 2 boincer umatlas    592394 Jan 10 00:02 input.tar.gz
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas         0 Jan 10 00:02 boinc_lockfile
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas      2520 Jan 10 00:02 pandaJob.out
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas        57 Jan 10 00:02 setup.sh.local
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas    989374 Jan 10 00:03 agis_schedconf.cvmfs.json
[2026-01-10 12:45:38] drwx------. 5 boincer umatlas      4096 Jan 10 00:04 pilot3
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas      6858 Jan 10 12:38 init_data.xml
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas 217084009 Jan 10 12:39 HITS.47898826._035417.pool.root.1
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas       532 Jan 10 12:40 boinc_task_state.xml
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas      1038 Jan 10 12:43 memory_monitor_summary.json
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas   1516240 Jan 10 12:43 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas    866262 Jan 10 12:44 log.47898826._035417.job.log.tgz.1
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas      7835 Jan 10 12:44 heartbeat.json
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:45 boinc_mmap_file
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas        29 Jan 10 12:45 wrapper_checkpoint.txt
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas        95 Jan 10 12:45 pilot_heartbeat.json
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas      4824 Jan 10 12:45 pilotlog.txt
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas   4692377 Jan 10 12:45 log.47898826._035417.job.log.1
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas       357 Jan 10 12:45 output.list
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:45 runtime_log
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas   5580800 Jan 10 12:45 result.tar.gz
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas      9355 Jan 10 12:45 runtime_log.err
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas       662 Jan 10 12:45 k4DODmbzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDolKDmEcbJAo.diag
[2026-01-10 12:45:38] -rw-r--r--. 1 boincer umatlas     21242 Jan 10 12:45 stderr.txt
[2026-01-10 12:45:38] HITS file was successfully produced:
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas 217084009 Jan 10 12:39 shared/HITS.pool.root.1
[2026-01-10 12:45:38]  *** Contents of shared directory: ***
[2026-01-10 12:45:38] total 436368
[2026-01-10 12:45:38] -rw-r--r--. 2 boincer umatlas 223555343 Jan 10 00:02 ATLAS.root_0
[2026-01-10 12:45:38] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 00:02 start_atlas.sh
[2026-01-10 12:45:38] -rw-r--r--. 2 boincer umatlas    592394 Jan 10 00:02 input.tar.gz
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas 217084009 Jan 10 12:39 HITS.pool.root.1
[2026-01-10 12:45:38] -rw-------. 1 boincer umatlas   5580800 Jan 10 12:45 result.tar.gz
12:45:40 (1356883): run_atlas exited; CPU time 153686.631515
12:45:40 (1356883): called boinc_finish(0)

</stderr_txt>
]]>

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