Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:32:53 (1057391): wrapper (7.7.26015): starting
17:32:53 (1057391): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 17:32:53] Arguments: --nthreads 4
[2026-01-09 17:32:53] Threads: 4
[2026-01-09 17:32:53] Checking for CVMFS
[2026-01-09 17:32:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:32:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:32:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:32:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:32:53] 2.12.7.0 702796 1852 74500 154950 0 56 3867489 4097025 0 130560 0 1113027 99.986 71144 27845 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2026-01-09 17:32:53] CVMFS is ok
[2026-01-09 17:32:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:32:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:32:53] Further information can be found at the LHC@home message board.
[2026-01-09 17:32:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:32:53] Checking for apptainer binary...
[2026-01-09 17:32:53] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2026-01-09 17:32:53] apptainer is not installed, using version from CVMFS
[2026-01-09 17:32:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:32:53] pckeatlas05
[2026-01-09 17:32:53] apptainer works
[2026-01-09 17:32:53] Set ATHENA_PROC_NUMBER=4
[2026-01-09 17:32:53] Set ATHENA_CORE_NUMBER=4
[2026-01-09 17:32:53] Starting ATLAS job with PandaID=6963163225
[2026-01-09 17:32:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:33:26]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:33:26] 2026-01-09 19:32:50,369 | INFO     | total number of processed events: 400 (read)
[2026-01-09 20:33:26] 2026-01-09 19:32:50,370 | INFO     | executing command: lscpu
[2026-01-09 20:33:26] 2026-01-09 19:32:50,379 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 20:33:26] 2026-01-09 19:32:50,714 | INFO     | time since job start (10792s) is within the limit (349056.0s)
[2026-01-09 20:33:26] 2026-01-09 19:32:52,211 | INFO     | monitor loop #822: job 0:6963163225 is in state 'finished'
[2026-01-09 20:33:26] 2026-01-09 19:32:52,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:33:26] 2026-01-09 19:32:52,720 | INFO     | time since job start (10794s) is within the limit (349056.0s)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,780 | INFO     | PID=1061046 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:33:26] 2026-01-09 19:32:53,826 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 20:33:26] 2026-01-09 19:32:53,826 | INFO     | found 4 cores (4 cores per socket, 1 socket) , CPU MHz: 3749.22175
[2026-01-09 20:33:26] 2026-01-09 19:32:53,827 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6963163225/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,827 | INFO     | extracted standard info from prmon json
[2026-01-09 20:33:26] 2026-01-09 19:32:53,828 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:33:26] 2026-01-09 19:32:53,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:33:26] 2026-01-09 19:32:53,828 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:33:26] 2026-01-09 19:32:53,828 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:33:26] 2026-01-09 19:32:53,830 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:33:26] 2026-01-09 19:32:53,830 | INFO     | sum of square deviations: 1719429448.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,830 | INFO     | sum of deviations: -45643238287.99999
[2026-01-09 20:33:26] 2026-01-09 19:32:53,831 | INFO     | mean x: 1767981765.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,831 | INFO     | mean y: 2458707.7627118644
[2026-01-09 20:33:26] 2026-01-09 19:32:53,831 | INFO     | intersect: 46934546024.63284
[2026-01-09 20:33:26] 2026-01-09 19:32:53,831 | INFO     | chi2: 1.420479411722885
[2026-01-09 20:33:26] 2026-01-09 19:32:53,831 | INFO     | sum of square deviations: 1577789583.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | sum of deviations: -43966860199.99999
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | mean x: 1767981612.5
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | mean y: 2460513.1627906975
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | intersect: 49269232984.27883
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | chi2: 1.4107161246136066
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | current chi2=1.4107161246136066 (change=0.6873233803111956 %)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | right removable region: 171
[2026-01-09 20:33:26] 2026-01-09 19:32:53,832 | INFO     | sum of square deviations: 1577789583.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,833 | INFO     | sum of deviations: -57835702287.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,833 | INFO     | mean x: 1767981917.5
[2026-01-09 20:33:26] 2026-01-09 19:32:53,833 | INFO     | mean y: 2471450.6860465114
[2026-01-09 20:33:26] 2026-01-09 19:32:53,833 | INFO     | intersect: 64809893765.45829
[2026-01-09 20:33:26] 2026-01-09 19:32:53,833 | INFO     | chi2: 0.355111909056742
[2026-01-09 20:33:26] 2026-01-09 19:32:53,833 | INFO     | current chi2=0.355111909056742 (change=75.00055923893818 %)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,833 | INFO     | sum of square deviations: 1444149868.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,834 | INFO     | sum of deviations: -50413010616.999985
[2026-01-09 20:33:26] 2026-01-09 19:32:53,834 | INFO     | mean x: 1767982070.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,834 | INFO     | mean y: 2462973.5508982036
[2026-01-09 20:33:26] 2026-01-09 19:32:53,834 | INFO     | intersect: 61719948700.29931
[2026-01-09 20:33:26] 2026-01-09 19:32:53,834 | INFO     | chi2: 0.34755630166149
[2026-01-09 20:33:26] 2026-01-09 19:32:53,834 | INFO     | current chi2=0.34755630166149 (change=2.1276693916916023 %)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,834 | INFO     | left removable region: 20
[2026-01-09 20:33:26] 2026-01-09 19:32:53,835 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,835 | INFO     | sum of deviations: -32670896304.000004
[2026-01-09 20:33:26] 2026-01-09 19:32:53,835 | INFO     | mean x: 1767982192.0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,835 | INFO     | mean y: 2444234.642384106
[2026-01-09 20:33:26] 2026-01-09 19:32:53,835 | INFO     | intersect: 54108853996.00513
[2026-01-09 20:33:26] 2026-01-09 19:32:53,835 | INFO     | chi2: 0.29494399929071324
[2026-01-09 20:33:26] 2026-01-09 19:32:53,835 | INFO     | current memory leak: -30.60 B/s (using 151 data points, chi2=0.29)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | could have reported an average CPU frequency of 3725 MHz (9 samples)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | ..............................
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . Timing measurements:
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . get job = 0 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . initial setup = 0 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . payload setup = 3 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . stage-in = 0 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . payload execution = 10766 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . stage-out = 0 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | . log creation = 0 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,836 | INFO     | ..............................
[2026-01-09 20:33:26] 2026-01-09 19:32:53,884 | INFO     | 
[2026-01-09 20:33:26] 2026-01-09 19:32:53,884 | INFO     | job summary report
[2026-01-09 20:33:26] 2026-01-09 19:32:53,884 | INFO     | --------------------------------------------------
[2026-01-09 20:33:26] 2026-01-09 19:32:53,884 | INFO     | PanDA job id: 6963163225
[2026-01-09 20:33:26] 2026-01-09 19:32:53,884 | INFO     | task id: 47898826
[2026-01-09 20:33:26] 2026-01-09 19:32:53,884 | INFO     | errors: (none)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,884 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | pilot state: finished 
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | transexitcode: 0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | exeerrorcode: 0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | exeerrordiag: 
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | exitcode: 0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | exitmsg: OK
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | cpuconsumptiontime: 41910 s
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | nevents: 400
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | neventsw: 0
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | pid: 1068225
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | pgrp: 1068225
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | corecount: 4
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | event service: False
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | sizes: {0: 2283971, 2: 2284233, 11: 2284261, 10773: 2313437, 10775: 2322435, 10776: 2322491, 10782: 2322877}
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | --------------------------------------------------
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | 
[2026-01-09 20:33:26] 2026-01-09 19:32:53,885 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-01-09 20:33:26] 2026-01-09 19:32:53,895 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,895 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,895 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,895 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,895 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,896 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:33:26] 2026-01-09 19:32:53,897 | INFO     | job 6963163225 has completed (purged errors)
[2026-01-09 20:33:26] 2026-01-09 19:32:53,897 | INFO     | overall cleanup function is called
[2026-01-09 20:33:26] 2026-01-09 19:32:54,903 | INFO     | --- collectZombieJob: --- 10, [1068225]
[2026-01-09 20:33:26] 2026-01-09 19:32:54,903 | INFO     | zombie collector waiting for pid 1068225
[2026-01-09 20:33:26] 2026-01-09 19:32:54,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:33:26] 2026-01-09 19:32:54,903 | INFO     | collected zombie processes
[2026-01-09 20:33:26] 2026-01-09 19:32:54,903 | INFO     | will attempt to kill all subprocesses of pid=1068225
[2026-01-09 20:33:26] 2026-01-09 19:32:54,945 | INFO     | process IDs to be killed: [1068225] (in reverse order)
[2026-01-09 20:33:26] 2026-01-09 19:32:54,964 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:33:26] 2026-01-09 19:32:54,964 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:33:26] 2026-01-09 19:32:54,965 | INFO     | did not find any defunct processes belonging to 1068225
[2026-01-09 20:33:26] 2026-01-09 19:32:54,966 | INFO     | did not find any defunct processes belonging to 1068225
[2026-01-09 20:33:26] 2026-01-09 19:32:54,967 | INFO     | ready for new job
[2026-01-09 20:33:26] 2026-01-09 19:32:54,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:33:26] 2026-01-09 19:32:54,967 | INFO     | ***************************************
[2026-01-09 20:33:26] 2026-01-09 19:32:54,968 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:33:26] 2026-01-09 19:32:54,968 | INFO     | ***************************************
[2026-01-09 20:33:26] 2026-01-09 19:32:54,968 | INFO     | 
[2026-01-09 20:33:26] 2026-01-09 19:32:54,968 | INFO     | architecture information:
[2026-01-09 20:33:26] 2026-01-09 19:32:54,968 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:33:26] 2026-01-09 19:32:54,973 | INFO     | cat /etc/os-release:
[2026-01-09 20:33:26] NAME="CentOS Linux"
[2026-01-09 20:33:26] VERSION="7 (Core)"
[2026-01-09 20:33:26] ID="centos"
[2026-01-09 20:33:26] ID_LIKE="rhel fedora"
[2026-01-09 20:33:26] VERSION_ID="7"
[2026-01-09 20:33:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:33:26] ANSI_COLOR="0;31"
[2026-01-09 20:33:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:33:26] HOME_URL="https://www.centos.org/"
[2026-01-09 20:33:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:33:26] 
[2026-01-09 20:33:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:33:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:33:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:33:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:33:26] 
[2026-01-09 20:33:26] 2026-01-09 19:32:54,974 | INFO     | ***************************************
[2026-01-09 20:33:26] 2026-01-09 19:32:55,476 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-09 20:33:26] 2026-01-09 19:32:55,483 | INFO     | sufficient remaining disk space (43894439936 B)
[2026-01-09 20:33:26] 2026-01-09 19:32:55,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:33:26] 2026-01-09 19:32:55,484 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:33:26] 2026-01-09 19:32:55,484 | INFO     | update_server=False
[2026-01-09 20:33:26] 2026-01-09 19:32:55,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:33:26] 2026-01-09 19:32:55,484 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:33:26] 2026-01-09 19:32:55,720 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:33:26] 2026-01-09 19:32:55,720 | INFO     | aborting loop
[2026-01-09 20:33:26] 2026-01-09 19:32:55,984 | INFO     | all data control threads have been joined
[2026-01-09 20:33:26] 2026-01-09 19:32:56,137 | INFO     | all payload control threads have been joined
[2026-01-09 20:33:26] 2026-01-09 19:32:56,203 | INFO     | all job control threads have been joined
[2026-01-09 20:33:26] 2026-01-09 19:32:56,489 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:56,489 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:56,541 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:56,548 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:56,725 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:56,784 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:56,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:33:26] 2026-01-09 19:32:56,949 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:56,989 | INFO     | [data] control thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:57,138 | INFO     | [payload] control thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:57,145 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:57,154 [wrapper] supervise_pilot (15 min periods counter: 13)
[2026-01-09 20:33:26] 2026-01-09 19:32:57,208 | INFO     | [job] control thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:57,547 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:57,785 | INFO     | [job] validate thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:32:58,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:33:26] 2026-01-09 19:32:58,852 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:33:02,060 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:33:06,162 | INFO     | job.realtimelogging is not enabled
[2026-01-09 20:33:26] 2026-01-09 19:33:07,167 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:33:26] 2026-01-09 19:33:15,780 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:33:26] 2026-01-09 19:33:17,749 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660541323072)>', '<ExcThread(monitor, started 140659776288512)>']
[2026-01-09 20:33:26] 2026-01-09 19:33:22,771 | INFO     | all workflow threads have been joined
[2026-01-09 20:33:26] 2026-01-09 19:33:22,771 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:33:26] 2026-01-09 19:33:22,772 | INFO     | traces error code: 0
[2026-01-09 20:33:26] 2026-01-09 19:33:22,772 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:33:26] 2026-01-09 19:33:25,904 | INFO     | PID=1061046 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:33:26] 2026-01-09 19:33:25,905 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:33:26] 2026-01-09 19:33:25,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:33:26] 2026-01-09 19:33:25,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:33:26] 2026-01-09 19:33:25,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:33:26] 2026-01-09 19:33:25,905 | INFO     | [monitor] control thread has ended
[2026-01-09 20:33:26] 2026-01-09 19:33:25,962 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:33:26] 2026-01-09 19:33:25,963 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:33:26] 2026-01-09 19:33:25,964 [wrapper] pilotpid: 1061046
[2026-01-09 20:33:26] 2026-01-09 19:33:25,965 [wrapper] Pilot exit status: 0
[2026-01-09 20:33:26] 2026-01-09 19:33:25,969 [wrapper] pandaids: 6963163225
[2026-01-09 20:33:26] 2026-01-09 19:33:25,980 [wrapper] cleanup supervisor_pilot 1090882 1061047
[2026-01-09 20:33:26] 2026-01-09 19:33:25,981 [wrapper] Test setup, not cleaning
[2026-01-09 20:33:26] 2026-01-09 19:33:25,983 [wrapper] apfmon messages muted
[2026-01-09 20:33:26] 2026-01-09 19:33:25,984 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:33:26] 2026-01-09 19:33:25,985 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:33:26]  *** Error codes and diagnostics ***
[2026-01-09 20:33:26]     "exeErrorCode": 0,
[2026-01-09 20:33:26]     "exeErrorDiag": "",
[2026-01-09 20:33:26]     "pilotErrorCode": 0,
[2026-01-09 20:33:26]     "pilotErrorDiag": "",
[2026-01-09 20:33:26]  *** Listing of results directory ***
[2026-01-09 20:33:26] total 437784
[2026-01-09 20:33:26] -rwx------ 1 boinc boinc     36322 Jan  9 01:56 runpilot2-wrapper.sh
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:56 queuedata.json
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc       100 Jan  9 17:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:33:26] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 17:32 run_atlas
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc       105 Jan  9 17:32 job.xml
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc      6312 Jan  9 17:32 init_data.xml
[2026-01-09 20:33:26] -rw-r--r-- 2 boinc boinc 225495439 Jan  9 17:32 EVNT.47898824._001314.pool.root.1
[2026-01-09 20:33:26] -rw-r--r-- 2 boinc boinc     15847 Jan  9 17:32 start_atlas.sh
[2026-01-09 20:33:26] drwxrwx--x 2 boinc boinc        68 Jan  9 17:32 shared
[2026-01-09 20:33:26] -rw-r--r-- 2 boinc boinc    592391 Jan  9 17:32 input.tar.gz
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc         0 Jan  9 17:32 boinc_lockfile
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc      2520 Jan  9 17:32 pandaJob.out
[2026-01-09 20:33:26] -rw------- 1 boinc boinc    989356 Jan  9 17:32 agis_schedconf.cvmfs.json
[2026-01-09 20:33:26] -rw------- 1 boinc boinc   1516240 Jan  9 17:32 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:33:26] drwx------ 5 boinc boinc      4096 Jan  9 17:32 pilot3
[2026-01-09 20:33:26] -rw------- 1 boinc boinc 215170670 Jan  9 20:32 HITS.47898826._034452.pool.root.1
[2026-01-09 20:33:26] -rw------- 1 boinc boinc      1016 Jan  9 20:32 memory_monitor_summary.json
[2026-01-09 20:33:26] -rw------- 1 boinc boinc    337271 Jan  9 20:32 log.47898826._034452.job.log.tgz.1
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc       530 Jan  9 20:32 boinc_task_state.xml
[2026-01-09 20:33:26] -rw------- 1 boinc boinc      7766 Jan  9 20:32 heartbeat.json
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc      8192 Jan  9 20:33 boinc_mmap_file
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc        28 Jan  9 20:33 wrapper_checkpoint.txt
[2026-01-09 20:33:26] -rw------- 1 boinc boinc       747 Jan  9 20:33 pilotlog.txt
[2026-01-09 20:33:26] -rw------- 1 boinc boinc        95 Jan  9 20:33 pilot_heartbeat.json
[2026-01-09 20:33:26] -rw------- 1 boinc boinc   1528464 Jan  9 20:33 log.47898826._034452.job.log.1
[2026-01-09 20:33:26] -rw------- 1 boinc boinc       357 Jan  9 20:33 output.list
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc       620 Jan  9 20:33 runtime_log
[2026-01-09 20:33:26] -rw------- 1 boinc boinc   1884160 Jan  9 20:33 result.tar.gz
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc      8831 Jan  9 20:33 runtime_log.err
[2026-01-09 20:33:26] -rw------- 1 boinc boinc       653 Jan  9 20:33 KULKDm1yFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkilKDmwW7V0m.diag
[2026-01-09 20:33:26] -rw-r--r-- 1 boinc boinc     21501 Jan  9 20:33 stderr.txt
[2026-01-09 20:33:26] HITS file was successfully produced:
[2026-01-09 20:33:26] -rw------- 1 boinc boinc 215170670 Jan  9 20:32 shared/HITS.pool.root.1
[2026-01-09 20:33:26]  *** Contents of shared directory: ***
[2026-01-09 20:33:26] total 432776
[2026-01-09 20:33:26] -rw-r--r-- 2 boinc boinc 225495439 Jan  9 17:32 ATLAS.root_0
[2026-01-09 20:33:26] -rw-r--r-- 2 boinc boinc     15847 Jan  9 17:32 start_atlas.sh
[2026-01-09 20:33:26] -rw-r--r-- 2 boinc boinc    592391 Jan  9 17:32 input.tar.gz
[2026-01-09 20:33:26] -rw------- 1 boinc boinc 215170670 Jan  9 20:32 HITS.pool.root.1
[2026-01-09 20:33:26] -rw------- 1 boinc boinc   1884160 Jan  9 20:33 result.tar.gz
20:33:27 (1057391): run_atlas exited; CPU time 41977.427821
20:33:27 (1057391): called boinc_finish(0)

</stderr_txt>
]]>

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