Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:48:22 (3612883): wrapper (7.7.26015): starting
04:48:22 (3612883): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 04:48:22] Arguments: --nthreads 3
[2026-01-10 04:48:22] Threads: 3
[2026-01-10 04:48:22] Checking for CVMFS
[2026-01-10 04:48:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 04:48:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 04:48:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 04:48:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 04:48:22] 2.9.2.0 2973026 2591 86464 154966 1 56 22120411 36864001 0 130560 0 1665709 99.988 97525 5812 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 04:48:22] CVMFS is ok
[2026-01-10 04:48:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 04:48:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 04:48:22] Further information can be found at the LHC@home message board.
[2026-01-10 04:48:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 04:48:22] Checking for apptainer binary...
[2026-01-10 04:48:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 04:48:22] Running /usr/bin/apptainer --version
[2026-01-10 04:48:22] apptainer version 1.4.1-1.1
[2026-01-10 04:48:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 04:48:22] atlasA228b
[2026-01-10 04:48:22] apptainer works
[2026-01-10 04:48:22] Set ATHENA_PROC_NUMBER=3
[2026-01-10 04:48:22] Set ATHENA_CORE_NUMBER=3
[2026-01-10 04:48:22] Starting ATLAS job with PandaID=6963165799
[2026-01-10 04:48:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 06:40:42]  *** The last 200 lines of the pilot log: ***
[2026-01-10 06:40:42] 2026-01-10 05:40:00,228 | INFO     | --- collectZombieJob: --- 10, [3623053]
[2026-01-10 06:40:42] 2026-01-10 05:40:00,228 | INFO     | zombie collector waiting for pid 3623053
[2026-01-10 06:40:42] 2026-01-10 05:40:00,228 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 06:40:42] 2026-01-10 05:40:00,228 | INFO     | collected zombie processes
[2026-01-10 06:40:42] 2026-01-10 05:40:00,228 | INFO     | will attempt to kill all subprocesses of pid=3623053
[2026-01-10 06:40:42] 2026-01-10 05:40:00,271 | INFO     | process IDs to be killed: [3623053] (in reverse order)
[2026-01-10 06:40:42] 2026-01-10 05:40:00,299 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 06:40:42] 2026-01-10 05:40:00,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 06:40:42] 2026-01-10 05:40:00,301 | INFO     | did not find any defunct processes belonging to 3623053
[2026-01-10 06:40:42] 2026-01-10 05:40:00,302 | INFO     | did not find any defunct processes belonging to 3623053
[2026-01-10 06:40:42] 2026-01-10 05:40:00,302 | INFO     | ready for new job
[2026-01-10 06:40:42] 2026-01-10 05:40:00,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 06:40:42] 2026-01-10 05:40:00,302 | INFO     | ***************************************
[2026-01-10 06:40:42] 2026-01-10 05:40:00,302 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 06:40:42] 2026-01-10 05:40:00,303 | INFO     | ***************************************
[2026-01-10 06:40:42] 2026-01-10 05:40:00,303 | INFO     | 
[2026-01-10 06:40:42] 2026-01-10 05:40:00,303 | INFO     | architecture information:
[2026-01-10 06:40:42] 2026-01-10 05:40:00,303 | INFO     | executing command: cat /etc/os-release
[2026-01-10 06:40:42] 2026-01-10 05:40:00,313 | INFO     | cat /etc/os-release:
[2026-01-10 06:40:42] NAME="CentOS Linux"
[2026-01-10 06:40:42] VERSION="7 (Core)"
[2026-01-10 06:40:42] ID="centos"
[2026-01-10 06:40:42] ID_LIKE="rhel fedora"
[2026-01-10 06:40:42] VERSION_ID="7"
[2026-01-10 06:40:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 06:40:42] ANSI_COLOR="0;31"
[2026-01-10 06:40:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 06:40:42] HOME_URL="https://www.centos.org/"
[2026-01-10 06:40:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 06:40:42] 
[2026-01-10 06:40:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 06:40:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 06:40:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 06:40:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 06:40:42] 
[2026-01-10 06:40:42] 2026-01-10 05:40:00,313 | INFO     | ***************************************
[2026-01-10 06:40:42] 2026-01-10 05:40:00,816 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 06:40:42] 2026-01-10 05:40:00,828 | INFO     | sufficient remaining disk space (283210940416 B)
[2026-01-10 06:40:42] 2026-01-10 05:40:00,828 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 06:40:42] 2026-01-10 05:40:00,828 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 06:40:42] 2026-01-10 05:40:00,828 | INFO     | update_server=False
[2026-01-10 06:40:42] 2026-01-10 05:40:00,828 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 06:40:42] 2026-01-10 05:40:00,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 06:40:42] 2026-01-10 05:40:00,829 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:40:42] 2026-01-10 05:40:00,829 | INFO     | aborting loop
[2026-01-10 06:40:42] 2026-01-10 05:40:00,829 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 06:40:42] 2026-01-10 05:40:00,904 | INFO     | all job control threads have been joined
[2026-01-10 06:40:42] 2026-01-10 05:40:01,087 | INFO     | all data control threads have been joined
[2026-01-10 06:40:42] 2026-01-10 05:40:01,378 | INFO     | all payload control threads have been joined
[2026-01-10 06:40:42] 2026-01-10 05:40:01,834 | INFO     | [job] retrieve thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:01,834 | INFO     | [job] job monitor thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:01,834 | INFO     | [job] queue monitor thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:01,844 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:01,909 | INFO     | [job] control thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,038 | INFO     | [data] copytool_in thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,092 | INFO     | [data] control thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,200 | INFO     | [payload] failed_post thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,303 | INFO     | [job] validate thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,321 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,383 | INFO     | [payload] control thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,409 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,726 | INFO     | [payload] validate_post thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:02,834 | INFO     | [data] copytool_out thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:03,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 06:40:42] 2026-01-10 05:40:07,487 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:10,995 | INFO     | job.realtimelogging is not enabled
[2026-01-10 06:40:42] 2026-01-10 05:40:12,001 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 06:40:42] 2026-01-10 05:40:30,570 | INFO     | PID=3616604 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 06:40:42] 2026-01-10 05:40:30,571 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 06:40:42] 2026-01-10 05:40:30,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 06:40:42] 2026-01-10 05:40:30,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 06:40:42] 2026-01-10 05:40:35,628 | INFO     | [monitor] cgroup control has ended
[2026-01-10 06:40:42] 2026-01-10 05:40:37,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045512230720)>', '<ExcThread(monitor, started 140045025523456)>']
[2026-01-10 06:40:42] 2026-01-10 05:40:37,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 06:40:42] 2026-01-10 05:40:37,609 | INFO     | [monitor] control thread has ended
[2026-01-10 06:40:42] 2026-01-10 05:40:42,503 | INFO     | all workflow threads have been joined
[2026-01-10 06:40:42] 2026-01-10 05:40:42,504 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 06:40:42] 2026-01-10 05:40:42,504 | INFO     | traces error code: 0
[2026-01-10 06:40:42] 2026-01-10 05:40:42,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 06:40:42] 2026-01-10 05:40:42,555 [wrapper] ==== pilot stdout END ====
[2026-01-10 06:40:42] 2026-01-10 05:40:42,558 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 06:40:42] 2026-01-10 05:40:42,560 [wrapper] pilotpid: 3616604
[2026-01-10 06:40:42] 2026-01-10 05:40:42,563 [wrapper] Pilot exit status: 0
[2026-01-10 06:40:42] 2026-01-10 05:40:42,570 [wrapper] pandaids: 6963165799
[2026-01-10 06:40:42] 2026-01-10 05:40:42,588 [wrapper] cleanup supervisor_pilot 3637509 3616605
[2026-01-10 06:40:42] 2026-01-10 05:40:42,590 [wrapper] Test setup, not cleaning
[2026-01-10 06:40:42] 2026-01-10 05:40:42,593 [wrapper] apfmon messages muted
[2026-01-10 06:40:42] 2026-01-10 05:40:42,595 [wrapper] ==== wrapper stdout END ====
[2026-01-10 06:40:42] 2026-01-10 05:40:42,597 [wrapper] ==== wrapper stderr END ====
[2026-01-10 06:40:42]  *** Error codes and diagnostics ***
[2026-01-10 06:40:42]     "exeErrorCode": 0,
[2026-01-10 06:40:42]     "exeErrorDiag": "",
[2026-01-10 06:40:42]     "pilotErrorCode": 0,
[2026-01-10 06:40:42]     "pilotErrorDiag": "",
[2026-01-10 06:40:42]  *** Listing of results directory ***
[2026-01-10 06:40:42] total 441812
[2026-01-10 06:40:42] -rwx------ 1 boinc boinc     36322 Jan  9 01:56 runpilot2-wrapper.sh
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc       100 Jan 10 04:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 06:40:42] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 04:48 run_atlas
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc       105 Jan 10 04:48 job.xml
[2026-01-10 06:40:42] -rw-r--r-- 2 boinc boinc 225803609 Jan 10 04:48 EVNT.47898824._001352.pool.root.1
[2026-01-10 06:40:42] -rw-r--r-- 2 boinc boinc    592396 Jan 10 04:48 input.tar.gz
[2026-01-10 06:40:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:48 start_atlas.sh
[2026-01-10 06:40:42] drwxrwx--x 2 boinc boinc      4096 Jan 10 04:48 shared
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:48 boinc_setup_complete
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc      6449 Jan 10 04:48 init_data.xml
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc         0 Jan 10 04:48 boinc_lockfile
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc      2520 Jan 10 04:48 pandaJob.out
[2026-01-10 06:40:42] -rw------- 1 boinc boinc    989374 Jan 10 04:48 agis_schedconf.cvmfs.json
[2026-01-10 06:40:42] -rw------- 1 boinc boinc   1516240 Jan 10 04:48 agis_ddmendpoints.agis.ALL.json
[2026-01-10 06:40:42] drwx------ 5 boinc boinc      4096 Jan 10 04:48 pilot3
[2026-01-10 06:40:42] -rw------- 1 boinc boinc 220214230 Jan 10 06:39 HITS.47898826._034912.pool.root.1
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc       530 Jan 10 06:39 boinc_task_state.xml
[2026-01-10 06:40:42] -rw------- 1 boinc boinc      1014 Jan 10 06:39 memory_monitor_summary.json
[2026-01-10 06:40:42] -rw------- 1 boinc boinc    281094 Jan 10 06:39 log.47898826._034912.job.log.tgz.1
[2026-01-10 06:40:42] -rw------- 1 boinc boinc      7755 Jan 10 06:39 heartbeat.json
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc      8192 Jan 10 06:40 boinc_mmap_file
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc        27 Jan 10 06:40 wrapper_checkpoint.txt
[2026-01-10 06:40:42] -rw------- 1 boinc boinc        95 Jan 10 06:40 pilot_heartbeat.json
[2026-01-10 06:40:42] -rw------- 1 boinc boinc      4824 Jan 10 06:40 pilotlog.txt
[2026-01-10 06:40:42] -rw------- 1 boinc boinc    966634 Jan 10 06:40 log.47898826._034912.job.log.1
[2026-01-10 06:40:42] -rw------- 1 boinc boinc       357 Jan 10 06:40 output.list
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc       620 Jan 10 06:40 runtime_log
[2026-01-10 06:40:42] -rw------- 1 boinc boinc   1269760 Jan 10 06:40 result.tar.gz
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc      8917 Jan 10 06:40 runtime_log.err
[2026-01-10 06:40:42] -rw------- 1 boinc boinc       663 Jan 10 06:40 mQaMDmEzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhllKDmXQEa2n.diag
[2026-01-10 06:40:42] -rw-r--r-- 1 boinc boinc     10711 Jan 10 06:40 stderr.txt
[2026-01-10 06:40:42] HITS file was successfully produced:
[2026-01-10 06:40:42] -rw------- 1 boinc boinc 220214230 Jan 10 06:39 shared/HITS.pool.root.1
[2026-01-10 06:40:42]  *** Contents of shared directory: ***
[2026-01-10 06:40:42] total 437412
[2026-01-10 06:40:42] -rw-r--r-- 2 boinc boinc 225803609 Jan 10 04:48 ATLAS.root_0
[2026-01-10 06:40:42] -rw-r--r-- 2 boinc boinc    592396 Jan 10 04:48 input.tar.gz
[2026-01-10 06:40:42] -rw-r--r-- 2 boinc boinc     15847 Jan 10 04:48 start_atlas.sh
[2026-01-10 06:40:42] -rw------- 1 boinc boinc 220214230 Jan 10 06:39 HITS.pool.root.1
[2026-01-10 06:40:42] -rw------- 1 boinc boinc   1269760 Jan 10 06:40 result.tar.gz
06:40:43 (3612883): run_atlas exited; CPU time 19351.855949
06:40:43 (3612883): called boinc_finish(0)

</stderr_txt>
]]>

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