Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:48:37 (2735): wrapper (7.7.26015): starting
08:48:37 (2735): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 08:48:37] Arguments: --nthreads 8
[2026-01-09 08:48:37] Threads: 8
[2026-01-09 08:48:37] Checking for CVMFS
[2026-01-09 08:48:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 08:48:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 08:48:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 08:48:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 08:48:38] 2.11.2.0 2888 112305 109876 154945 3 58 12529764 20275200 1 130560 0 23544842 99.772 7653320 32378 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 08:48:38] CVMFS is ok
[2026-01-09 08:48:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 08:48:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 08:48:38] Further information can be found at the LHC@home message board.
[2026-01-09 08:48:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 08:48:38] Checking for apptainer binary...
[2026-01-09 08:48:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 08:48:38] Running /usr/bin/apptainer --version
[2026-01-09 08:48:38] apptainer version 1.3.2-1.el7
[2026-01-09 08:48:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 08:48:40] c-204-6.aglt2.org
[2026-01-09 08:48:40] apptainer works
[2026-01-09 08:48:40] Set ATHENA_PROC_NUMBER=8
[2026-01-09 08:48:40] Set ATHENA_CORE_NUMBER=8
[2026-01-09 08:48:40] Starting ATLAS job with PandaID=6963165477
[2026-01-09 08:48:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:42:21]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:42:21] 2026-01-09 16:41:26,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:42:21] 2026-01-09 16:41:26,760 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 11:42:21] 2026-01-09 16:41:26,939 | INFO     | time since job start (10348s) is within the limit (349056.0s)
[2026-01-09 11:42:21] 2026-01-09 16:41:28,947 | INFO     | time since job start (10350s) is within the limit (349056.0s)
[2026-01-09 11:42:21] 2026-01-09 16:41:29,243 | INFO     | monitor loop #763: job 0:6963165477 is in state 'finished'
[2026-01-09 11:42:21] 2026-01-09 16:41:29,244 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:42:21] 2026-01-09 16:41:30,951 | INFO     | time since job start (10352s) is within the limit (349056.0s)
[2026-01-09 11:42:21] 2026-01-09 16:41:30,952 | INFO     | 10355s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 11:42:21] 2026-01-09 16:41:31,746 | INFO     | monitor loop #764: job 0:6963165477 is in state 'finished'
[2026-01-09 11:42:21] 2026-01-09 16:41:31,790 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,480 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 11:42:21] 2026-01-09 16:41:32,484 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2026-01-09 11:42:21] 2026-01-09 16:41:32,486 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963165477/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,487 | INFO     | extracted standard info from prmon json
[2026-01-09 11:42:21] 2026-01-09 16:41:32,487 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:42:21] 2026-01-09 16:41:32,487 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:42:21] 2026-01-09 16:41:32,488 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 11:42:21] 2026-01-09 16:41:32,488 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 11:42:21] 2026-01-09 16:41:32,492 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:42:21] 2026-01-09 16:41:32,492 | INFO     | sum of square deviations: 1496660620.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,493 | INFO     | sum of deviations: 4013152912.0000134
[2026-01-09 11:42:21] 2026-01-09 16:41:32,493 | INFO     | mean x: 1767971694.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,493 | INFO     | mean y: 2512773.1242603553
[2026-01-09 11:42:21] 2026-01-09 16:41:32,494 | INFO     | intersect: -4738134944.398832
[2026-01-09 11:42:21] 2026-01-09 16:41:32,494 | INFO     | chi2: 1.522398456602401
[2026-01-09 11:42:21] 2026-01-09 16:41:32,494 | INFO     | sum of square deviations: 1367709365.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,495 | INFO     | sum of deviations: 4003934408.9999986
[2026-01-09 11:42:21] 2026-01-09 16:41:32,495 | INFO     | mean x: 1767971541.5
[2026-01-09 11:42:21] 2026-01-09 16:41:32,495 | INFO     | mean y: 2512762.3536585364
[2026-01-09 11:42:21] 2026-01-09 16:41:32,495 | INFO     | intersect: -5173178996.651456
[2026-01-09 11:42:21] 2026-01-09 16:41:32,496 | INFO     | chi2: 1.5231902968318223
[2026-01-09 11:42:21] 2026-01-09 16:41:32,496 | INFO     | current chi2=1.5231902968318223 (change=-0.05201267946556785 %)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,496 | INFO     | right removable region: 163
[2026-01-09 11:42:21] 2026-01-09 16:41:32,496 | INFO     | sum of square deviations: 1367709365.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,497 | INFO     | sum of deviations: -20110214192.499996
[2026-01-09 11:42:21] 2026-01-09 16:41:32,497 | INFO     | mean x: 1767971846.5
[2026-01-09 11:42:21] 2026-01-09 16:41:32,497 | INFO     | mean y: 2540894.298780488
[2026-01-09 11:42:21] 2026-01-09 16:41:32,498 | INFO     | intersect: 25998043615.320747
[2026-01-09 11:42:21] 2026-01-09 16:41:32,498 | INFO     | chi2: 0.1447572657054725
[2026-01-09 11:42:21] 2026-01-09 16:41:32,498 | INFO     | current chi2=0.1447572657054725 (change=90.49149944433515 %)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,498 | INFO     | sum of square deviations: 1246386160.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,499 | INFO     | sum of deviations: -18759260033.000004
[2026-01-09 11:42:21] 2026-01-09 16:41:32,499 | INFO     | mean x: 1767971999.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,500 | INFO     | mean y: 2539125.4905660376
[2026-01-09 11:42:21] 2026-01-09 16:41:32,500 | INFO     | intersect: 26612146584.790195
[2026-01-09 11:42:21] 2026-01-09 16:41:32,500 | INFO     | chi2: 0.12902601225206065
[2026-01-09 11:42:21] 2026-01-09 16:41:32,500 | INFO     | current chi2=0.12902601225206065 (change=10.867332549247749 %)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,500 | INFO     | left removable region: 20
[2026-01-09 11:42:21] 2026-01-09 16:41:32,501 | INFO     | sum of square deviations: 906703512.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,501 | INFO     | sum of deviations: -7218564991.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,501 | INFO     | mean x: 1767972121.0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,502 | INFO     | mean y: 2523927.895104895
[2026-01-09 11:42:21] 2026-01-09 16:41:32,502 | INFO     | intersect: 14077931697.700474
[2026-01-09 11:42:21] 2026-01-09 16:41:32,502 | INFO     | chi2: 0.07726931464204118
[2026-01-09 11:42:21] 2026-01-09 16:41:32,502 | INFO     | current memory leak: -7.96 B/s (using 143 data points, chi2=0.08)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,503 | INFO     | could have reported an average CPU frequency of 2028 MHz (9 samples)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,503 | INFO     | ..............................
[2026-01-09 11:42:21] 2026-01-09 16:41:32,503 | INFO     | . Timing measurements:
[2026-01-09 11:42:21] 2026-01-09 16:41:32,503 | INFO     | . get job = 0 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,503 | INFO     | . initial setup = 2 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,503 | INFO     | . payload setup = 8 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,503 | INFO     | . stage-in = 0 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,504 | INFO     | . payload execution = 10310 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,504 | INFO     | . stage-out = 0 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,504 | INFO     | . log creation = 0 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,504 | INFO     | ..............................
[2026-01-09 11:42:21] 2026-01-09 16:41:32,615 | INFO     | 
[2026-01-09 11:42:21] 2026-01-09 16:41:32,615 | INFO     | job summary report
[2026-01-09 11:42:21] 2026-01-09 16:41:32,616 | INFO     | --------------------------------------------------
[2026-01-09 11:42:21] 2026-01-09 16:41:32,616 | INFO     | PanDA job id: 6963165477
[2026-01-09 11:42:21] 2026-01-09 16:41:32,616 | INFO     | task id: 47898826
[2026-01-09 11:42:21] 2026-01-09 16:41:32,616 | INFO     | errors: (none)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,616 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:42:21] 2026-01-09 16:41:32,616 | INFO     | pilot state: finished 
[2026-01-09 11:42:21] 2026-01-09 16:41:32,617 | INFO     | transexitcode: 0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,617 | INFO     | exeerrorcode: 0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,617 | INFO     | exeerrordiag: 
[2026-01-09 11:42:21] 2026-01-09 16:41:32,617 | INFO     | exitcode: 0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,617 | INFO     | exitmsg: OK
[2026-01-09 11:42:21] 2026-01-09 16:41:32,617 | INFO     | cpuconsumptiontime: 77736 s
[2026-01-09 11:42:21] 2026-01-09 16:41:32,617 | INFO     | nevents: 400
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | neventsw: 0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | pid: 13000
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | pgrp: 13000
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | corecount: 8
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | event service: False
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | sizes: {0: 2283971, 6: 2284233, 11: 2284261, 10323: 2312961, 10324: 2321959, 10328: 2322015, 10337: 2322401}
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | --------------------------------------------------
[2026-01-09 11:42:21] 2026-01-09 16:41:32,618 | INFO     | 
[2026-01-09 11:42:21] 2026-01-09 16:41:32,619 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 11:42:21] 2026-01-09 16:41:32,645 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,646 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,646 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,646 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,646 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,647 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,647 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,647 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,647 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,647 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,648 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,649 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,649 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,649 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,649 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:42:21] 2026-01-09 16:41:32,649 | INFO     | job 6963165477 has completed (purged errors)
[2026-01-09 11:42:21] 2026-01-09 16:41:32,650 | INFO     | overall cleanup function is called
[2026-01-09 11:42:21] 2026-01-09 16:41:33,658 | INFO     | --- collectZombieJob: --- 10, [13000]
[2026-01-09 11:42:21] 2026-01-09 16:41:33,658 | INFO     | zombie collector waiting for pid 13000
[2026-01-09 11:42:21] 2026-01-09 16:41:33,659 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:42:21] 2026-01-09 16:41:33,659 | INFO     | collected zombie processes
[2026-01-09 11:42:21] 2026-01-09 16:41:33,659 | INFO     | will attempt to kill all subprocesses of pid=13000
[2026-01-09 11:42:21] 2026-01-09 16:41:33,750 | INFO     | process IDs to be killed: [13000] (in reverse order)
[2026-01-09 11:42:21] 2026-01-09 16:41:33,809 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:42:21] 2026-01-09 16:41:33,810 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:42:21] 2026-01-09 16:41:33,815 | INFO     | did not find any defunct processes belonging to 13000
[2026-01-09 11:42:21] 2026-01-09 16:41:33,819 | INFO     | did not find any defunct processes belonging to 13000
[2026-01-09 11:42:21] 2026-01-09 16:41:33,819 | INFO     | ready for new job
[2026-01-09 11:42:21] 2026-01-09 16:41:33,819 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:42:21] 2026-01-09 16:41:33,822 | INFO     | ***************************************
[2026-01-09 11:42:21] 2026-01-09 16:41:33,823 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:42:21] 2026-01-09 16:41:33,823 | INFO     | ***************************************
[2026-01-09 11:42:21] 2026-01-09 16:41:33,823 | INFO     | 
[2026-01-09 11:42:21] 2026-01-09 16:41:33,823 | INFO     | architecture information:
[2026-01-09 11:42:21] 2026-01-09 16:41:33,824 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:42:21] 2026-01-09 16:41:33,845 | INFO     | cat /etc/os-release:
[2026-01-09 11:42:21] NAME="CentOS Linux"
[2026-01-09 11:42:21] VERSION="7 (Core)"
[2026-01-09 11:42:21] ID="centos"
[2026-01-09 11:42:21] ID_LIKE="rhel fedora"
[2026-01-09 11:42:21] VERSION_ID="7"
[2026-01-09 11:42:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:42:21] ANSI_COLOR="0;31"
[2026-01-09 11:42:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:42:21] HOME_URL="https://www.centos.org/"
[2026-01-09 11:42:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:42:21] 
[2026-01-09 11:42:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:42:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:42:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:42:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:42:21] 
[2026-01-09 11:42:21] 2026-01-09 16:41:33,846 | INFO     | ***************************************
[2026-01-09 11:42:21] 2026-01-09 16:41:34,349 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 11:42:21] 2026-01-09 16:41:34,369 | INFO     | sufficient remaining disk space (18541969408 B)
[2026-01-09 11:42:21] 2026-01-09 16:41:34,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:42:21] 2026-01-09 16:41:34,370 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:42:21] 2026-01-09 16:41:34,370 | INFO     | update_server=False
[2026-01-09 11:42:21] 2026-01-09 16:41:34,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:42:21] 2026-01-09 16:41:34,371 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:42:21] 2026-01-09 16:41:34,371 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:42:21] 2026-01-09 16:41:34,669 | INFO     | all payload control threads have been joined
[2026-01-09 11:42:21] 2026-01-09 16:41:34,945 | INFO     | all job control threads have been joined
[2026-01-09 11:42:21] 2026-01-09 16:41:35,162 | INFO     | all data control threads have been joined
[2026-01-09 11:42:21] 2026-01-09 16:41:35,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:42:21] 2026-01-09 16:41:35,298 | INFO     | aborting loop
[2026-01-09 11:42:21] 2026-01-09 16:41:35,372 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:35,373 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:35,515 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:35,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:42:21] 2026-01-09 16:41:35,674 | INFO     | [payload] control thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:35,677 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:35,725 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:35,950 | INFO     | [job] control thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:36,147 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:36,164 | INFO     | [data] control thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:36,306 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:36,464 | INFO     | [job] validate thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:36,624 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:36,840 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:36,891 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:37,619 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:41:38,377 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:42:21] 2026-01-09 16:42:04,153 | INFO     | PID=6485 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 11:42:21] 2026-01-09 16:42:04,153 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:42:21] 2026-01-09 16:42:04,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:42:21] 2026-01-09 16:42:04,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:42:21] 2026-01-09 16:42:14,605 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:42:21] 2026-01-09 16:42:15,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716848711488)>', '<ExcThread(monitor, started 139715823007488)>']
[2026-01-09 11:42:21] 2026-01-09 16:42:16,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:42:21] 2026-01-09 16:42:16,214 | INFO     | [monitor] control thread has ended
[2026-01-09 11:42:21] 2026-01-09 16:42:20,637 | INFO     | all workflow threads have been joined
[2026-01-09 11:42:21] 2026-01-09 16:42:20,637 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:42:21] 2026-01-09 16:42:20,638 | INFO     | traces error code: 0
[2026-01-09 11:42:21] 2026-01-09 16:42:20,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:42:21] 2026-01-09 16:42:20,778 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:42:21] 2026-01-09 16:42:20,783 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:42:21] 2026-01-09 16:42:20,788 [wrapper] pilotpid: 6485
[2026-01-09 11:42:21] 2026-01-09 16:42:20,793 [wrapper] Pilot exit status: 0
[2026-01-09 11:42:21] 2026-01-09 16:42:20,812 [wrapper] pandaids: 6963165477
[2026-01-09 11:42:21] 2026-01-09 16:42:20,870 [wrapper] cleanup supervisor_pilot 30373 6486
[2026-01-09 11:42:21] 2026-01-09 16:42:20,875 [wrapper] Test setup, not cleaning
[2026-01-09 11:42:21] 2026-01-09 16:42:20,880 [wrapper] apfmon messages muted
[2026-01-09 11:42:21] 2026-01-09 16:42:20,886 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:42:21] 2026-01-09 16:42:20,890 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:42:21]  *** Error codes and diagnostics ***
[2026-01-09 11:42:21]     "exeErrorCode": 0,
[2026-01-09 11:42:21]     "exeErrorDiag": "",
[2026-01-09 11:42:21]     "pilotErrorCode": 0,
[2026-01-09 11:42:21]     "pilotErrorDiag": "",
[2026-01-09 11:42:21]  *** Listing of results directory ***
[2026-01-09 11:42:21] total 430804
[2026-01-09 11:42:21] -rwx------ 1 boincer umatlas     36322 Jan  8 19:56 runpilot2-wrapper.sh
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:56 queuedata.json
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas       100 Jan  9 08:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:42:21] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 08:48 run_atlas
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas       105 Jan  9 08:48 job.xml
[2026-01-09 11:42:21] -rw-r--r-- 2 boincer umatlas 225251311 Jan  9 08:48 EVNT.47898824._001323.pool.root.1
[2026-01-09 11:42:21] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:48 start_atlas.sh
[2026-01-09 11:42:21] drwxrwx--x 2 boincer umatlas      4096 Jan  9 08:48 shared
[2026-01-09 11:42:21] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 08:48 input.tar.gz
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas         0 Jan  9 08:48 boinc_lockfile
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 08:48 pandaJob.out
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas        57 Jan  9 08:48 setup.sh.local
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas    989377 Jan  9 08:48 agis_schedconf.cvmfs.json
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas   1516240 Jan  9 08:48 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:42:21] drwx------ 5 boincer umatlas      4096 Jan  9 08:48 pilot3
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas      5910 Jan  9 11:37 init_data.xml
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas 208265902 Jan  9 11:40 HITS.47898826._034696.pool.root.1
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas       530 Jan  9 11:40 boinc_task_state.xml
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas      1048 Jan  9 11:41 memory_monitor_summary.json
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas    420610 Jan  9 11:41 log.47898826._034696.job.log.tgz.1
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas        95 Jan  9 11:41 pilot_heartbeat.json
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas      7843 Jan  9 11:41 heartbeat.json
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 11:42 boinc_mmap_file
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas        28 Jan  9 11:42 wrapper_checkpoint.txt
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas      4745 Jan  9 11:42 pilotlog.txt
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas   1435252 Jan  9 11:42 log.47898826._034696.job.log.1
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas       357 Jan  9 11:42 output.list
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas       620 Jan  9 11:42 runtime_log
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas   1873920 Jan  9 11:42 result.tar.gz
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas      9338 Jan  9 11:42 runtime_log.err
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas       661 Jan  9 11:42 6epMDm2yFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1UgKDm6w9f6n.diag
[2026-01-09 11:42:21] -rw-r--r-- 1 boincer umatlas     21438 Jan  9 11:42 stderr.txt
[2026-01-09 11:42:21] HITS file was successfully produced:
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas 208265902 Jan  9 11:40 shared/HITS.pool.root.1
[2026-01-09 11:42:21]  *** Contents of shared directory: ***
[2026-01-09 11:42:21] total 425792
[2026-01-09 11:42:21] -rw-r--r-- 2 boincer umatlas 225251311 Jan  9 08:48 ATLAS.root_0
[2026-01-09 11:42:21] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:48 start_atlas.sh
[2026-01-09 11:42:21] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 08:48 input.tar.gz
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas 208265902 Jan  9 11:40 HITS.pool.root.1
[2026-01-09 11:42:21] -rw------- 1 boincer umatlas   1873920 Jan  9 11:42 result.tar.gz
11:42:22 (2735): run_atlas exited; CPU time 77698.006376
11:42:22 (2735): called boinc_finish(0)

</stderr_txt>
]]>

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