Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:37:35 (2913677): wrapper (7.7.26015): starting
05:37:35 (2913677): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 05:37:35] Arguments: --nthreads 3
[2026-01-10 05:37:35] Threads: 3
[2026-01-10 05:37:35] Checking for CVMFS
[2026-01-10 05:37:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 05:37:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 05:37:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 05:37:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 05:37:36] 2.9.2.0 2136230 3311 82200 154968 3 57 20912356 36864000 0 130560 0 2011232 99.987 125274 4298 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 05:37:36] CVMFS is ok
[2026-01-10 05:37:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 05:37:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 05:37:36] Further information can be found at the LHC@home message board.
[2026-01-10 05:37:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 05:37:36] Checking for apptainer binary...
[2026-01-10 05:37:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 05:37:36] Running /usr/bin/apptainer --version
[2026-01-10 05:37:36] apptainer version 1.4.1-1.1
[2026-01-10 05:37:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 05:37:36] madmaxA273
[2026-01-10 05:37:36] apptainer works
[2026-01-10 05:37:36] Set ATHENA_PROC_NUMBER=3
[2026-01-10 05:37:36] Set ATHENA_CORE_NUMBER=3
[2026-01-10 05:37:36] Starting ATLAS job with PandaID=6963163306
[2026-01-10 05:37:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:37:57]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:37:57] 2026-01-10 06:37:12,960 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:37:57] 2026-01-10 06:37:12,960 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:37:57] 2026-01-10 06:37:12,960 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:37:57] 2026-01-10 06:37:12,960 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:37:57] 2026-01-10 06:37:12,960 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:37:57] 2026-01-10 06:37:12,960 | INFO     | job 6963163306 has completed (purged errors)
[2026-01-10 07:37:57] 2026-01-10 06:37:12,960 | INFO     | overall cleanup function is called
[2026-01-10 07:37:57] 2026-01-10 06:37:13,966 | INFO     | --- collectZombieJob: --- 10, [2923841]
[2026-01-10 07:37:57] 2026-01-10 06:37:13,966 | INFO     | zombie collector waiting for pid 2923841
[2026-01-10 07:37:57] 2026-01-10 06:37:13,966 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:37:57] 2026-01-10 06:37:13,966 | INFO     | collected zombie processes
[2026-01-10 07:37:57] 2026-01-10 06:37:13,966 | INFO     | will attempt to kill all subprocesses of pid=2923841
[2026-01-10 07:37:57] 2026-01-10 06:37:14,007 | INFO     | process IDs to be killed: [2923841] (in reverse order)
[2026-01-10 07:37:57] 2026-01-10 06:37:14,030 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:37:57] 2026-01-10 06:37:14,030 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:37:57] 2026-01-10 06:37:14,032 | INFO     | did not find any defunct processes belonging to 2923841
[2026-01-10 07:37:57] 2026-01-10 06:37:14,033 | INFO     | did not find any defunct processes belonging to 2923841
[2026-01-10 07:37:57] 2026-01-10 06:37:14,033 | INFO     | ready for new job
[2026-01-10 07:37:57] 2026-01-10 06:37:14,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:37:57] 2026-01-10 06:37:14,034 | INFO     | ***************************************
[2026-01-10 07:37:57] 2026-01-10 06:37:14,034 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:37:57] 2026-01-10 06:37:14,034 | INFO     | ***************************************
[2026-01-10 07:37:57] 2026-01-10 06:37:14,034 | INFO     | 
[2026-01-10 07:37:57] 2026-01-10 06:37:14,034 | INFO     | architecture information:
[2026-01-10 07:37:57] 2026-01-10 06:37:14,034 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:37:57] 2026-01-10 06:37:14,043 | INFO     | cat /etc/os-release:
[2026-01-10 07:37:57] NAME="CentOS Linux"
[2026-01-10 07:37:57] VERSION="7 (Core)"
[2026-01-10 07:37:57] ID="centos"
[2026-01-10 07:37:57] ID_LIKE="rhel fedora"
[2026-01-10 07:37:57] VERSION_ID="7"
[2026-01-10 07:37:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:37:57] ANSI_COLOR="0;31"
[2026-01-10 07:37:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:37:57] HOME_URL="https://www.centos.org/"
[2026-01-10 07:37:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:37:57] 
[2026-01-10 07:37:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:37:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:37:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:37:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:37:57] 
[2026-01-10 07:37:57] 2026-01-10 06:37:14,043 | INFO     | ***************************************
[2026-01-10 07:37:57] 2026-01-10 06:37:14,545 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | INFO     | sufficient remaining disk space (339348553728 B)
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | INFO     | update_server=False
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:37:57] 2026-01-10 06:37:14,555 | INFO     | aborting loop
[2026-01-10 07:37:57] 2026-01-10 06:37:14,654 | INFO     | all job control threads have been joined
[2026-01-10 07:37:57] 2026-01-10 06:37:15,221 | INFO     | all payload control threads have been joined
[2026-01-10 07:37:57] 2026-01-10 06:37:15,284 | INFO     | all data control threads have been joined
[2026-01-10 07:37:57] 2026-01-10 06:37:15,560 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:15,561 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:15,561 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:15,659 | INFO     | [job] control thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:15,687 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,186 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,226 | INFO     | [payload] control thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,289 | INFO     | [data] control thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,316 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,561 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,742 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,863 | INFO     | [job] validate thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:16,948 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:17,075 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:17,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:37:57] 2026-01-10 06:37:21,917 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:25,208 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:37:57] 2026-01-10 06:37:26,213 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:37:57] 2026-01-10 06:37:40,437 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-01-10 07:37:57] 2026-01-10 06:37:44,716 | INFO     | PID=2917397 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:37:57] 2026-01-10 06:37:44,717 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:37:57] 2026-01-10 06:37:44,717 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:37:57] 2026-01-10 06:37:44,717 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:37:57] 2026-01-10 06:37:50,510 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:37:57] 2026-01-10 06:37:52,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172319717184)>', '<ExcThread(monitor, started 140171685127936)>']
[2026-01-10 07:37:57] 2026-01-10 06:37:52,757 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:37:57] 2026-01-10 06:37:52,757 | INFO     | [monitor] control thread has ended
[2026-01-10 07:37:57] 2026-01-10 06:37:57,395 | INFO     | all workflow threads have been joined
[2026-01-10 07:37:57] 2026-01-10 06:37:57,396 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:37:57] 2026-01-10 06:37:57,396 | INFO     | traces error code: 0
[2026-01-10 07:37:57] 2026-01-10 06:37:57,396 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:37:57] 2026-01-10 06:37:57,447 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:37:57] 2026-01-10 06:37:57,449 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:37:57] 2026-01-10 06:37:57,452 [wrapper] pilotpid: 2917397
[2026-01-10 07:37:57] 2026-01-10 06:37:57,454 [wrapper] Pilot exit status: 0
[2026-01-10 07:37:57] 2026-01-10 06:37:57,461 [wrapper] pandaids: 6963163306
[2026-01-10 07:37:57] 2026-01-10 06:37:57,476 [wrapper] cleanup supervisor_pilot 2941034 2917398
[2026-01-10 07:37:57] 2026-01-10 06:37:57,478 [wrapper] Test setup, not cleaning
[2026-01-10 07:37:57] 2026-01-10 06:37:57,481 [wrapper] apfmon messages muted
[2026-01-10 07:37:57] 2026-01-10 06:37:57,483 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:37:57] 2026-01-10 06:37:57,485 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:37:57]  *** Error codes and diagnostics ***
[2026-01-10 07:37:57]     "exeErrorCode": 0,
[2026-01-10 07:37:57]     "exeErrorDiag": "",
[2026-01-10 07:37:57]     "pilotErrorCode": 0,
[2026-01-10 07:37:57]     "pilotErrorDiag": "",
[2026-01-10 07:37:57]  *** Listing of results directory ***
[2026-01-10 07:37:57] total 444476
[2026-01-10 07:37:57] -rwx------ 1 boinc boinc     36322 Jan  9 01:56 runpilot2-wrapper.sh
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:56 queuedata.json
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc       100 Jan 10 05:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:37:57] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 05:37 run_atlas
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc       105 Jan 10 05:37 job.xml
[2026-01-10 07:37:57] -rw-r--r-- 2 boinc boinc 224525498 Jan 10 05:37 EVNT.47898824._001317.pool.root.1
[2026-01-10 07:37:57] drwxrwx--x 2 boinc boinc      4096 Jan 10 05:37 shared
[2026-01-10 07:37:57] -rw-r--r-- 2 boinc boinc    592396 Jan 10 05:37 input.tar.gz
[2026-01-10 07:37:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:37 start_atlas.sh
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:37 boinc_setup_complete
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc      6443 Jan 10 05:37 init_data.xml
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:37 boinc_lockfile
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc      2520 Jan 10 05:37 pandaJob.out
[2026-01-10 07:37:57] -rw------- 1 boinc boinc    989374 Jan 10 05:37 agis_schedconf.cvmfs.json
[2026-01-10 07:37:57] -rw------- 1 boinc boinc   1516240 Jan 10 05:37 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:37:57] drwx------ 5 boinc boinc      4096 Jan 10 05:37 pilot3
[2026-01-10 07:37:57] -rw------- 1 boinc boinc 224089750 Jan 10 07:36 HITS.47898826._034533.pool.root.1
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc       529 Jan 10 07:36 boinc_task_state.xml
[2026-01-10 07:37:57] -rw------- 1 boinc boinc      1020 Jan 10 07:37 memory_monitor_summary.json
[2026-01-10 07:37:57] -rw------- 1 boinc boinc    282784 Jan 10 07:37 log.47898826._034533.job.log.tgz.1
[2026-01-10 07:37:57] -rw------- 1 boinc boinc      7768 Jan 10 07:37 heartbeat.json
[2026-01-10 07:37:57] -rw------- 1 boinc boinc        95 Jan 10 07:37 pilot_heartbeat.json
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc        27 Jan 10 07:37 wrapper_checkpoint.txt
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc      8192 Jan 10 07:37 boinc_mmap_file
[2026-01-10 07:37:57] -rw------- 1 boinc boinc      4824 Jan 10 07:37 pilotlog.txt
[2026-01-10 07:37:57] -rw------- 1 boinc boinc   1031494 Jan 10 07:37 log.47898826._034533.job.log.1
[2026-01-10 07:37:57] -rw------- 1 boinc boinc       357 Jan 10 07:37 output.list
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc       620 Jan 10 07:37 runtime_log
[2026-01-10 07:37:57] -rw------- 1 boinc boinc   1331200 Jan 10 07:37 result.tar.gz
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc      8917 Jan 10 07:37 runtime_log.err
[2026-01-10 07:37:57] -rw------- 1 boinc boinc       664 Jan 10 07:37 0UVLDm1yFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNjlKDmn1WZZn.diag
[2026-01-10 07:37:57] -rw-r--r-- 1 boinc boinc     11514 Jan 10 07:37 stderr.txt
[2026-01-10 07:37:57] HITS file was successfully produced:
[2026-01-10 07:37:57] -rw------- 1 boinc boinc 224089750 Jan 10 07:36 shared/HITS.pool.root.1
[2026-01-10 07:37:57]  *** Contents of shared directory: ***
[2026-01-10 07:37:57] total 440008
[2026-01-10 07:37:57] -rw-r--r-- 2 boinc boinc 224525498 Jan 10 05:37 ATLAS.root_0
[2026-01-10 07:37:57] -rw-r--r-- 2 boinc boinc    592396 Jan 10 05:37 input.tar.gz
[2026-01-10 07:37:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:37 start_atlas.sh
[2026-01-10 07:37:57] -rw------- 1 boinc boinc 224089750 Jan 10 07:36 HITS.pool.root.1
[2026-01-10 07:37:57] -rw------- 1 boinc boinc   1331200 Jan 10 07:37 result.tar.gz
07:37:59 (2913677): run_atlas exited; CPU time 20805.897566
07:37:59 (2913677): called boinc_finish(0)

</stderr_txt>
]]>

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