Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:18:42 (398): wrapper (7.7.26015): starting
17:18:42 (398): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:18:42] Arguments: --nthreads 8
[2026-01-09 17:18:42] Threads: 8
[2026-01-09 17:18:42] Checking for CVMFS
[2026-01-09 17:18:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:18:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:18:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:18:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:18:42] 2.11.2.0 24551 35644 120544 154950 0 56 24845564 25165825 0 130560 0 15468639 99.801 10858467 3464 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 17:18:42] CVMFS is ok
[2026-01-09 17:18:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:18:42] Checking for apptainer binary...
[2026-01-09 17:18:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:18:42] Running /usr/bin/apptainer --version
[2026-01-09 17:18:42] apptainer version 1.3.2-1.el7
[2026-01-09 17:18:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:18:44] cg-vwn415.simple-grid.lan
[2026-01-09 17:18:44] apptainer works
[2026-01-09 17:18:44] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:18:44] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:18:44] Starting ATLAS job with PandaID=6963163232
[2026-01-09 17:18:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:04:20]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:04:20] 2026-01-09 19:03:10,829 | INFO     | time since job start (9852s) is within the limit (349056.0s)
[2026-01-09 20:04:20] 2026-01-09 19:03:11,281 | INFO     | monitor loop #674: job 0:6963163232 is in state 'finished'
[2026-01-09 20:04:20] 2026-01-09 19:03:11,281 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:04:20] 2026-01-09 19:03:12,836 | INFO     | time since job start (9854s) is within the limit (349056.0s)
[2026-01-09 20:04:20] 2026-01-09 19:03:13,784 | INFO     | monitor loop #675: job 0:6963163232 is in state 'finished'
[2026-01-09 20:04:20] 2026-01-09 19:03:13,784 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:04:20] 2026-01-09 19:03:14,841 | INFO     | time since job start (9856s) is within the limit (349056.0s)
[2026-01-09 20:04:20] 2026-01-09 19:03:15,947 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 20:04:20] 2026-01-09 19:03:15,948 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 20:04:20] 2026-01-09 19:03:15,950 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6963163232/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:04:20] 2026-01-09 19:03:15,951 | INFO     | extracted standard info from prmon json
[2026-01-09 20:04:20] 2026-01-09 19:03:15,951 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:04:20] 2026-01-09 19:03:15,951 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:04:20] 2026-01-09 19:03:15,951 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:04:20] 2026-01-09 19:03:15,952 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:04:20] 2026-01-09 19:03:15,955 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:04:20] 2026-01-09 19:03:15,956 | INFO     | sum of square deviations: 1294014960.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,957 | INFO     | sum of deviations: -11618953039.999998
[2026-01-09 20:04:20] 2026-01-09 19:03:15,957 | INFO     | mean x: 1767980447.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,957 | INFO     | mean y: 2550241.304347826
[2026-01-09 20:04:20] 2026-01-09 19:03:15,957 | INFO     | intersect: 15877236720.455414
[2026-01-09 20:04:20] 2026-01-09 19:03:15,957 | INFO     | chi2: 1.700791443768287
[2026-01-09 20:04:20] 2026-01-09 19:03:15,958 | INFO     | sum of square deviations: 1177156955.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,959 | INFO     | sum of deviations: -10646480182.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,959 | INFO     | mean x: 1767980294.5
[2026-01-09 20:04:20] 2026-01-09 19:03:15,959 | INFO     | mean y: 2551510.794871795
[2026-01-09 20:04:20] 2026-01-09 19:03:15,959 | INFO     | intersect: 15992574835.73099
[2026-01-09 20:04:20] 2026-01-09 19:03:15,960 | INFO     | chi2: 1.7005348855900437
[2026-01-09 20:04:20] 2026-01-09 19:03:15,960 | INFO     | current chi2=1.7005348855900437 (change=0.015084634814177067 %)
[2026-01-09 20:04:20] 2026-01-09 19:03:15,960 | INFO     | right removable region: 155
[2026-01-09 20:04:20] 2026-01-09 19:03:15,960 | INFO     | sum of square deviations: 1177156955.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,961 | INFO     | sum of deviations: -36692765384.000015
[2026-01-09 20:04:20] 2026-01-09 19:03:15,961 | INFO     | mean x: 1767980599.5
[2026-01-09 20:04:20] 2026-01-09 19:03:15,961 | INFO     | mean y: 2582508.0256410255
[2026-01-09 20:04:20] 2026-01-09 19:03:15,962 | INFO     | intersect: 55111713932.99963
[2026-01-09 20:04:20] 2026-01-09 19:03:15,962 | INFO     | chi2: 0.18531462064093412
[2026-01-09 20:04:20] 2026-01-09 19:03:15,962 | INFO     | current chi2=0.18531462064093412 (change=89.10421255234272 %)
[2026-01-09 20:04:20] 2026-01-09 19:03:15,962 | INFO     | sum of square deviations: 1067554900.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,963 | INFO     | sum of deviations: -37941292033.99999
[2026-01-09 20:04:20] 2026-01-09 19:03:15,963 | INFO     | mean x: 1767980752.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,964 | INFO     | mean y: 2584170.4105960266
[2026-01-09 20:04:20] 2026-01-09 19:03:15,964 | INFO     | intersect: 62837267447.235916
[2026-01-09 20:04:20] 2026-01-09 19:03:15,964 | INFO     | chi2: 0.14256741374374463
[2026-01-09 20:04:20] 2026-01-09 19:03:15,964 | INFO     | current chi2=0.14256741374374463 (change=23.0673687533897 %)
[2026-01-09 20:04:20] 2026-01-09 19:03:15,964 | INFO     | left removable region: 20
[2026-01-09 20:04:20] 2026-01-09 19:03:15,964 | INFO     | sum of square deviations: 762879420.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,965 | INFO     | sum of deviations: -28132277192.000004
[2026-01-09 20:04:20] 2026-01-09 19:03:15,965 | INFO     | mean x: 1767980874.0
[2026-01-09 20:04:20] 2026-01-09 19:03:15,966 | INFO     | mean y: 2574149.274074074
[2026-01-09 20:04:20] 2026-01-09 19:03:15,966 | INFO     | intersect: 65199414847.2738
[2026-01-09 20:04:20] 2026-01-09 19:03:15,966 | INFO     | chi2: 0.13393286128192206
[2026-01-09 20:04:20] 2026-01-09 19:03:15,966 | INFO     | current memory leak: -36.88 B/s (using 135 data points, chi2=0.13)
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | ..............................
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | . Timing measurements:
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | . get job = 0 s
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | . initial setup = 1 s
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | . payload setup = 6 s
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | . stage-in = 0 s
[2026-01-09 20:04:20] 2026-01-09 19:03:15,967 | INFO     | . payload execution = 9822 s
[2026-01-09 20:04:20] 2026-01-09 19:03:15,968 | INFO     | . stage-out = 0 s
[2026-01-09 20:04:20] 2026-01-09 19:03:15,968 | INFO     | . log creation = 0 s
[2026-01-09 20:04:20] 2026-01-09 19:03:15,968 | INFO     | ..............................
[2026-01-09 20:04:20] 2026-01-09 19:03:16,081 | INFO     | 
[2026-01-09 20:04:20] 2026-01-09 19:03:16,081 | INFO     | job summary report
[2026-01-09 20:04:20] 2026-01-09 19:03:16,081 | INFO     | --------------------------------------------------
[2026-01-09 20:04:20] 2026-01-09 19:03:16,081 | INFO     | PanDA job id: 6963163232
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | task id: 47898826
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | errors: (none)
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | pilot state: finished 
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | transexitcode: 0
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | exeerrorcode: 0
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | exeerrordiag: 
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | exitcode: 0
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | exitmsg: OK
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | cpuconsumptiontime: 74171 s
[2026-01-09 20:04:20] 2026-01-09 19:03:16,082 | INFO     | nevents: 400
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | neventsw: 0
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | pid: 10614
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | pgrp: 10614
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | corecount: 8
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | event service: False
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 9833: 2312774, 9834: 2321828, 9842: 2321860}
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | --------------------------------------------------
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | 
[2026-01-09 20:04:20] 2026-01-09 19:03:16,083 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-09 20:04:20] 2026-01-09 19:03:16,106 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,106 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,108 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:04:20] 2026-01-09 19:03:16,109 | INFO     | job 6963163232 has completed (purged errors)
[2026-01-09 20:04:20] 2026-01-09 19:03:16,109 | INFO     | overall cleanup function is called
[2026-01-09 20:04:20] 2026-01-09 19:03:17,117 | INFO     | --- collectZombieJob: --- 10, [10614]
[2026-01-09 20:04:20] 2026-01-09 19:03:17,117 | INFO     | zombie collector waiting for pid 10614
[2026-01-09 20:04:20] 2026-01-09 19:03:17,118 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:04:20] 2026-01-09 19:03:17,118 | INFO     | collected zombie processes
[2026-01-09 20:04:20] 2026-01-09 19:03:17,118 | INFO     | will attempt to kill all subprocesses of pid=10614
[2026-01-09 20:04:20] 2026-01-09 19:03:17,180 | INFO     | process IDs to be killed: [10614] (in reverse order)
[2026-01-09 20:04:20] 2026-01-09 19:03:17,238 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:04:20] 2026-01-09 19:03:17,238 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:04:20] 2026-01-09 19:03:17,241 | INFO     | did not find any defunct processes belonging to 10614
[2026-01-09 20:04:20] 2026-01-09 19:03:17,242 | INFO     | did not find any defunct processes belonging to 10614
[2026-01-09 20:04:20] 2026-01-09 19:03:17,242 | INFO     | ready for new job
[2026-01-09 20:04:20] 2026-01-09 19:03:17,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:04:20] 2026-01-09 19:03:17,244 | INFO     | ***************************************
[2026-01-09 20:04:20] 2026-01-09 19:03:17,244 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:04:20] 2026-01-09 19:03:17,245 | INFO     | ***************************************
[2026-01-09 20:04:20] 2026-01-09 19:03:17,245 | INFO     | 
[2026-01-09 20:04:20] 2026-01-09 19:03:17,245 | INFO     | pilot is running in a VM
[2026-01-09 20:04:20] 2026-01-09 19:03:17,245 | INFO     | architecture information:
[2026-01-09 20:04:20] 2026-01-09 19:03:17,246 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:04:20] 2026-01-09 19:03:17,263 | INFO     | cat /etc/os-release:
[2026-01-09 20:04:20] NAME="CentOS Linux"
[2026-01-09 20:04:20] VERSION="7 (Core)"
[2026-01-09 20:04:20] ID="centos"
[2026-01-09 20:04:20] ID_LIKE="rhel fedora"
[2026-01-09 20:04:20] VERSION_ID="7"
[2026-01-09 20:04:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:04:20] ANSI_COLOR="0;31"
[2026-01-09 20:04:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:04:20] HOME_URL="https://www.centos.org/"
[2026-01-09 20:04:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:04:20] 
[2026-01-09 20:04:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:04:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:04:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:04:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:04:20] 
[2026-01-09 20:04:20] 2026-01-09 19:03:17,263 | INFO     | ***************************************
[2026-01-09 20:04:20] 2026-01-09 19:03:17,766 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-09 20:04:20] 2026-01-09 19:03:17,785 | INFO     | sufficient remaining disk space (498100862976 B)
[2026-01-09 20:04:20] 2026-01-09 19:03:17,785 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:04:20] 2026-01-09 19:03:17,786 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:04:20] 2026-01-09 19:03:17,786 | INFO     | update_server=False
[2026-01-09 20:04:20] 2026-01-09 19:03:17,786 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:04:20] 2026-01-09 19:03:17,786 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:04:20] 2026-01-09 19:03:17,786 | INFO     | aborting loop
[2026-01-09 20:04:20] 2026-01-09 19:03:17,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:04:20] 2026-01-09 19:03:17,826 | INFO     | all job control threads have been joined
[2026-01-09 20:04:20] 2026-01-09 19:03:18,176 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:04:20] 2026-01-09 19:03:18,228 | INFO     | all payload control threads have been joined
[2026-01-09 20:04:20] 2026-01-09 19:03:18,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:04:20] 2026-01-09 19:03:18,330 | INFO     | all data control threads have been joined
[2026-01-09 20:04:20] 2026-01-09 19:03:18,791 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:18,792 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:18,793 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:18,809 | INFO     | [job] validate thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:18,832 | INFO     | [job] control thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:19,234 | INFO     | [payload] control thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:19,280 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:19,336 | INFO     | [data] control thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:19,476 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:19,595 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:19,635 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:20,022 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:20,182 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:20,394 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:22,297 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:28,539 | INFO     | job.realtimelogging is not enabled
[2026-01-09 20:04:20] 2026-01-09 19:03:29,544 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:04:20] 2026-01-09 19:03:48,034 | INFO     | PID=4185 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 20:04:20] 2026-01-09 19:03:48,035 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:04:20] 2026-01-09 19:03:48,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:04:20] 2026-01-09 19:03:48,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:04:20] 2026-01-09 19:04:06,687 [wrapper] supervise_pilot (15 min periods counter: 12)
[2026-01-09 20:04:20] 2026-01-09 19:04:14,051 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:04:20] 2026-01-09 19:04:14,936 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140440292865856)>', '<ExcThread(monitor, started 140439709538048)>']
[2026-01-09 20:04:20] 2026-01-09 19:04:15,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:04:20] 2026-01-09 19:04:15,174 | INFO     | [monitor] control thread has ended
[2026-01-09 20:04:20] 2026-01-09 19:04:19,962 | INFO     | all workflow threads have been joined
[2026-01-09 20:04:20] 2026-01-09 19:04:19,962 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:04:20] 2026-01-09 19:04:19,962 | INFO     | traces error code: 0
[2026-01-09 20:04:20] 2026-01-09 19:04:19,962 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:04:20] 2026-01-09 19:04:20,115 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:04:20] 2026-01-09 19:04:20,119 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:04:20] 2026-01-09 19:04:20,124 [wrapper] pilotpid: 4185
[2026-01-09 20:04:20] 2026-01-09 19:04:20,128 [wrapper] Pilot exit status: 0
[2026-01-09 20:04:20] 2026-01-09 19:04:20,143 [wrapper] pandaids: 6963163232
[2026-01-09 20:04:20] 2026-01-09 19:04:20,182 [wrapper] cleanup supervisor_pilot 30800 4186
[2026-01-09 20:04:20] 2026-01-09 19:04:20,188 [wrapper] Test setup, not cleaning
[2026-01-09 20:04:20] 2026-01-09 19:04:20,192 [wrapper] apfmon messages muted
[2026-01-09 20:04:20] 2026-01-09 19:04:20,196 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:04:20] 2026-01-09 19:04:20,199 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:04:20]  *** Error codes and diagnostics ***
[2026-01-09 20:04:20]     "exeErrorCode": 0,
[2026-01-09 20:04:20]     "exeErrorDiag": "",
[2026-01-09 20:04:20]     "pilotErrorCode": 0,
[2026-01-09 20:04:20]     "pilotErrorDiag": "",
[2026-01-09 20:04:20]  *** Listing of results directory ***
[2026-01-09 20:04:20] total 444944
[2026-01-09 20:04:20] -rwx------. 1 boinc boinc     36322 Jan  9 01:56 runpilot2-wrapper.sh
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc      5112 Jan  9 01:56 queuedata.json
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc       100 Jan  9 17:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:04:20] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 17:18 run_atlas
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc       105 Jan  9 17:18 job.xml
[2026-01-09 20:04:20] -rw-r--r--. 2 boinc boinc 225495439 Jan  9 17:18 EVNT.47898824._001314.pool.root.1
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc      6391 Jan  9 17:18 init_data.xml
[2026-01-09 20:04:20] -rw-r--r--. 2 boinc boinc     15847 Jan  9 17:18 start_atlas.sh
[2026-01-09 20:04:20] drwxrwx--x. 2 boinc boinc        68 Jan  9 17:18 shared
[2026-01-09 20:04:20] -rw-r--r--. 2 boinc boinc    592393 Jan  9 17:18 input.tar.gz
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc         0 Jan  9 17:18 boinc_lockfile
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc      2520 Jan  9 17:18 pandaJob.out
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc    989356 Jan  9 17:18 agis_schedconf.cvmfs.json
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc   1516240 Jan  9 17:18 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:04:20] drwx------. 5 boinc boinc      4096 Jan  9 17:18 pilot3
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc 222792678 Jan  9 20:02 HITS.47898826._034459.pool.root.1
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc       530 Jan  9 20:02 boinc_task_state.xml
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc        95 Jan  9 20:03 pilot_heartbeat.json
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc      1022 Jan  9 20:03 memory_monitor_summary.json
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc    391475 Jan  9 20:03 log.47898826._034459.job.log.tgz.1
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc      7770 Jan  9 20:03 heartbeat.json
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc        28 Jan  9 20:04 wrapper_checkpoint.txt
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc      8192 Jan  9 20:04 boinc_mmap_file
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc      4880 Jan  9 20:04 pilotlog.txt
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc   1326235 Jan  9 20:04 log.47898826._034459.job.log.1
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc       357 Jan  9 20:04 output.list
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc       620 Jan  9 20:04 runtime_log
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc   1740800 Jan  9 20:04 result.tar.gz
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc      8816 Jan  9 20:04 runtime_log.err
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc       652 Jan  9 20:04 p0RKDm1yFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoilKDmbjmVUm.diag
[2026-01-09 20:04:20] -rw-r--r--. 1 boinc boinc     20897 Jan  9 20:04 stderr.txt
[2026-01-09 20:04:20] HITS file was successfully produced:
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc 222792678 Jan  9 20:02 shared/HITS.pool.root.1
[2026-01-09 20:04:20]  *** Contents of shared directory: ***
[2026-01-09 20:04:20] total 440080
[2026-01-09 20:04:20] -rw-r--r--. 2 boinc boinc 225495439 Jan  9 17:18 ATLAS.root_0
[2026-01-09 20:04:20] -rw-r--r--. 2 boinc boinc     15847 Jan  9 17:18 start_atlas.sh
[2026-01-09 20:04:20] -rw-r--r--. 2 boinc boinc    592393 Jan  9 17:18 input.tar.gz
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc 222792678 Jan  9 20:02 HITS.pool.root.1
[2026-01-09 20:04:20] -rw-------. 1 boinc boinc   1740800 Jan  9 20:04 result.tar.gz
20:04:22 (398): run_atlas exited; CPU time 74239.428046
20:04:22 (398): called boinc_finish(0)

</stderr_txt>
]]>

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