Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:25 (31986): wrapper (7.7.26015): starting
08:31:25 (31986): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 08:31:25] Arguments: --nthreads 8
[2026-01-09 08:31:25] Threads: 8
[2026-01-09 08:31:25] Checking for CVMFS
[2026-01-09 08:31:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 08:31:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 08:31:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 08:31:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 08:31:26] 2.11.2.0 1632 29569 108896 154945 1 59 14558124 18432001 1315 130560 0 6508190 99.985 930454 44170 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 08:31:26] CVMFS is ok
[2026-01-09 08:31:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 08:31:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 08:31:26] Further information can be found at the LHC@home message board.
[2026-01-09 08:31:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 08:31:26] Checking for apptainer binary...
[2026-01-09 08:31:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 08:31:26] Running /usr/bin/apptainer --version
[2026-01-09 08:31:26] apptainer version 1.3.2-1.el7
[2026-01-09 08:31:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 08:31:27] c-206-1.aglt2.org
[2026-01-09 08:31:27] apptainer works
[2026-01-09 08:31:27] Set ATHENA_PROC_NUMBER=8
[2026-01-09 08:31:27] Set ATHENA_CORE_NUMBER=8
[2026-01-09 08:31:27] Starting ATLAS job with PandaID=6963162721
[2026-01-09 08:31:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:30:26 (7454): wrapper (7.7.26015): starting
10:30:26 (7454): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:30:26] Arguments: --nthreads 8
[2026-01-09 10:30:26] Threads: 8
[2026-01-09 10:30:26] This job has been restarted, cleaning up previous attempt
[2026-01-09 10:30:26] Checking for CVMFS
[2026-01-09 10:30:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:30:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:30:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:30:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:30:26] 2.11.2.0 1632 29688 103288 154948 2 11 14577483 18432000 1 130560 0 6752604 99.985 934561 44141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 10:30:26] CVMFS is ok
[2026-01-09 10:30:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 10:30:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 10:30:26] Further information can be found at the LHC@home message board.
[2026-01-09 10:30:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:30:26] Checking for apptainer binary...
[2026-01-09 10:30:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:30:26] Running /usr/bin/apptainer --version
[2026-01-09 10:30:26] apptainer version 1.3.2-1.el7
[2026-01-09 10:30:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:30:27] c-206-1.aglt2.org
[2026-01-09 10:30:27] apptainer works
[2026-01-09 10:30:27] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:30:27] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:30:27] Starting ATLAS job with PandaID=6963162721
[2026-01-09 10:30:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:48:23]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:48:23] 2026-01-09 19:47:49,563 | INFO     | time since job start (15430s) is within the limit (349056.0s)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,090 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 14:48:23] 2026-01-09 19:47:50,095 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1734.6666666666667
[2026-01-09 14:48:23] 2026-01-09 19:47:50,097 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963162721/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,098 | INFO     | extracted standard info from prmon json
[2026-01-09 14:48:23] 2026-01-09 19:47:50,098 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:48:23] 2026-01-09 19:47:50,098 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:48:23] 2026-01-09 19:47:50,098 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:48:23] 2026-01-09 19:47:50,098 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:48:23] 2026-01-09 19:47:50,102 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:48:23] 2026-01-09 19:47:50,103 | INFO     | sum of square deviations: 5021496942.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,107 | INFO     | sum of deviations: 14341988953.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,107 | INFO     | mean x: 1767980352.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,108 | INFO     | mean y: 2493922.225296443
[2026-01-09 14:48:23] 2026-01-09 19:47:50,108 | INFO     | intersect: -5047066989.666035
[2026-01-09 14:48:23] 2026-01-09 19:47:50,108 | INFO     | chi2: 2.238598666028266
[2026-01-09 14:48:23] 2026-01-09 19:47:50,109 | INFO     | sum of square deviations: 4729621702.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,110 | INFO     | sum of deviations: 30981268405.99999
[2026-01-09 14:48:23] 2026-01-09 19:47:50,110 | INFO     | mean x: 1767980199.5
[2026-01-09 14:48:23] 2026-01-09 19:47:50,110 | INFO     | mean y: 2502471.2661290322
[2026-01-09 14:48:23] 2026-01-09 19:47:50,110 | INFO     | intersect: -11578607509.272207
[2026-01-09 14:48:23] 2026-01-09 19:47:50,111 | INFO     | chi2: 1.4202025412850974
[2026-01-09 14:48:23] 2026-01-09 19:47:50,111 | INFO     | current chi2=1.4202025412850974 (change=36.558412062094696 %)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,111 | INFO     | sum of square deviations: 4449281562.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,113 | INFO     | sum of deviations: 30254612432.999996
[2026-01-09 14:48:23] 2026-01-09 19:47:50,113 | INFO     | mean x: 1767980047.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,113 | INFO     | mean y: 2502076.0658436213
[2026-01-09 14:48:23] 2026-01-09 19:47:50,113 | INFO     | intersect: -12019562692.34544
[2026-01-09 14:48:23] 2026-01-09 19:47:50,113 | INFO     | chi2: 1.4207959100327776
[2026-01-09 14:48:23] 2026-01-09 19:47:50,113 | INFO     | current chi2=1.4207959100327776 (change=-0.04178057216707365 %)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,113 | INFO     | right removable region: 242
[2026-01-09 14:48:23] 2026-01-09 19:47:50,114 | INFO     | sum of square deviations: 4729621702.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,115 | INFO     | sum of deviations: -23678690463.5
[2026-01-09 14:48:23] 2026-01-09 19:47:50,115 | INFO     | mean x: 1767980504.5
[2026-01-09 14:48:23] 2026-01-09 19:47:50,115 | INFO     | mean y: 2513618.9879032257
[2026-01-09 14:48:23] 2026-01-09 19:47:50,115 | INFO     | intersect: 8853847985.509312
[2026-01-09 14:48:23] 2026-01-09 19:47:50,116 | INFO     | chi2: 0.885740915104244
[2026-01-09 14:48:23] 2026-01-09 19:47:50,116 | INFO     | current chi2=0.885740915104244 (change=60.433242074796254 %)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,116 | INFO     | sum of square deviations: 4449281562.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,118 | INFO     | sum of deviations: -27872264265.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,118 | INFO     | mean x: 1767980657.0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,118 | INFO     | mean y: 2515870.0205761315
[2026-01-09 14:48:23] 2026-01-09 19:47:50,118 | INFO     | intersect: 11077927349.522785
[2026-01-09 14:48:23] 2026-01-09 19:47:50,118 | INFO     | chi2: 0.8554374818431556
[2026-01-09 14:48:23] 2026-01-09 19:47:50,118 | INFO     | current chi2=0.8554374818431556 (change=3.421252506724494 %)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,118 | INFO     | left removable region: 20
[2026-01-09 14:48:23] 2026-01-09 19:47:50,119 | INFO     | sum of square deviations: 3392567795.5
[2026-01-09 14:48:23] 2026-01-09 19:47:50,120 | INFO     | sum of deviations: -8199189401.000001
[2026-01-09 14:48:23] 2026-01-09 19:47:50,120 | INFO     | mean x: 1767980626.5
[2026-01-09 14:48:23] 2026-01-09 19:47:50,120 | INFO     | mean y: 2523595.2522522523
[2026-01-09 14:48:23] 2026-01-09 19:47:50,120 | INFO     | intersect: 4275395616.616148
[2026-01-09 14:48:23] 2026-01-09 19:47:50,121 | INFO     | chi2: 0.018290828615269806
[2026-01-09 14:48:23] 2026-01-09 19:47:50,121 | INFO     | current memory leak: -2.42 B/s (using 222 data points, chi2=0.02)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,122 | INFO     | could have reported an average CPU frequency of 2358 MHz (12 samples)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,122 | INFO     | ..............................
[2026-01-09 14:48:23] 2026-01-09 19:47:50,122 | INFO     | . Timing measurements:
[2026-01-09 14:48:23] 2026-01-09 19:47:50,122 | INFO     | . get job = 0 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,122 | INFO     | . initial setup = 1 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,123 | INFO     | . payload setup = 6 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,123 | INFO     | . stage-in = 0 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,123 | INFO     | . payload execution = 15396 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,123 | INFO     | . stage-out = 1 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,123 | INFO     | . log creation = 0 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,123 | INFO     | ..............................
[2026-01-09 14:48:23] 2026-01-09 19:47:50,208 | INFO     | 
[2026-01-09 14:48:23] 2026-01-09 19:47:50,208 | INFO     | job summary report
[2026-01-09 14:48:23] 2026-01-09 19:47:50,208 | INFO     | --------------------------------------------------
[2026-01-09 14:48:23] 2026-01-09 19:47:50,208 | INFO     | PanDA job id: 6963162721
[2026-01-09 14:48:23] 2026-01-09 19:47:50,208 | INFO     | task id: 47898826
[2026-01-09 14:48:23] 2026-01-09 19:47:50,208 | INFO     | errors: (none)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,208 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | pilot state: finished 
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | transexitcode: 0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | exeerrorcode: 0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | exeerrordiag: 
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | exitcode: 0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | exitmsg: OK
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | cpuconsumptiontime: 118079 s
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | nevents: 400
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | neventsw: 0
[2026-01-09 14:48:23] 2026-01-09 19:47:50,209 | INFO     | pid: 5572
[2026-01-09 14:48:23] 2026-01-09 19:47:50,210 | INFO     | pgrp: 5572
[2026-01-09 14:48:23] 2026-01-09 19:47:50,210 | INFO     | corecount: 8
[2026-01-09 14:48:23] 2026-01-09 19:47:50,210 | INFO     | event service: False
[2026-01-09 14:48:23] 2026-01-09 19:47:50,210 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 15407: 2315328, 15410: 2324510, 15415: 2324648}
[2026-01-09 14:48:23] 2026-01-09 19:47:50,210 | INFO     | --------------------------------------------------
[2026-01-09 14:48:23] 2026-01-09 19:47:50,210 | INFO     | 
[2026-01-09 14:48:23] 2026-01-09 19:47:50,210 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 14:48:23] 2026-01-09 19:47:50,229 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,229 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,230 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,231 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:48:23] 2026-01-09 19:47:50,232 | INFO     | job 6963162721 has completed (purged errors)
[2026-01-09 14:48:23] 2026-01-09 19:47:50,232 | INFO     | overall cleanup function is called
[2026-01-09 14:48:23] 2026-01-09 19:47:51,239 | INFO     | --- collectZombieJob: --- 10, [5572]
[2026-01-09 14:48:23] 2026-01-09 19:47:51,239 | INFO     | zombie collector waiting for pid 5572
[2026-01-09 14:48:23] 2026-01-09 19:47:51,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:48:23] 2026-01-09 19:47:51,240 | INFO     | collected zombie processes
[2026-01-09 14:48:23] 2026-01-09 19:47:51,240 | INFO     | will attempt to kill all subprocesses of pid=5572
[2026-01-09 14:48:23] 2026-01-09 19:47:51,357 | INFO     | process IDs to be killed: [5572] (in reverse order)
[2026-01-09 14:48:23] 2026-01-09 19:47:51,407 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:48:23] 2026-01-09 19:47:51,408 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:48:23] 2026-01-09 19:47:51,412 | INFO     | did not find any defunct processes belonging to 5572
[2026-01-09 14:48:23] 2026-01-09 19:47:51,415 | INFO     | did not find any defunct processes belonging to 5572
[2026-01-09 14:48:23] 2026-01-09 19:47:51,415 | INFO     | ready for new job
[2026-01-09 14:48:23] 2026-01-09 19:47:51,415 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:48:23] 2026-01-09 19:47:51,417 | INFO     | ***************************************
[2026-01-09 14:48:23] 2026-01-09 19:47:51,417 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:48:23] 2026-01-09 19:47:51,418 | INFO     | ***************************************
[2026-01-09 14:48:23] 2026-01-09 19:47:51,418 | INFO     | 
[2026-01-09 14:48:23] 2026-01-09 19:47:51,419 | INFO     | architecture information:
[2026-01-09 14:48:23] 2026-01-09 19:47:51,419 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:48:23] 2026-01-09 19:47:51,433 | INFO     | cat /etc/os-release:
[2026-01-09 14:48:23] NAME="CentOS Linux"
[2026-01-09 14:48:23] VERSION="7 (Core)"
[2026-01-09 14:48:23] ID="centos"
[2026-01-09 14:48:23] ID_LIKE="rhel fedora"
[2026-01-09 14:48:23] VERSION_ID="7"
[2026-01-09 14:48:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:48:23] ANSI_COLOR="0;31"
[2026-01-09 14:48:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:48:23] HOME_URL="https://www.centos.org/"
[2026-01-09 14:48:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:48:23] 
[2026-01-09 14:48:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:48:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:48:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:48:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:48:23] 
[2026-01-09 14:48:23] 2026-01-09 19:47:51,433 | INFO     | ***************************************
[2026-01-09 14:48:23] 2026-01-09 19:47:51,936 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 14:48:23] 2026-01-09 19:47:51,952 | INFO     | sufficient remaining disk space (28313649152 B)
[2026-01-09 14:48:23] 2026-01-09 19:47:51,953 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:48:23] 2026-01-09 19:47:51,953 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:48:23] 2026-01-09 19:47:51,953 | INFO     | update_server=False
[2026-01-09 14:48:23] 2026-01-09 19:47:51,953 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:48:23] 2026-01-09 19:47:51,954 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:48:23] 2026-01-09 19:47:51,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:48:23] 2026-01-09 19:47:51,954 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:48:23] 2026-01-09 19:47:51,955 | INFO     | aborting loop
[2026-01-09 14:48:23] 2026-01-09 19:47:52,007 | INFO     | all job control threads have been joined
[2026-01-09 14:48:23] 2026-01-09 19:47:52,600 | INFO     | all data control threads have been joined
[2026-01-09 14:48:23] 2026-01-09 19:47:52,703 | INFO     | all payload control threads have been joined
[2026-01-09 14:48:23] 2026-01-09 19:47:52,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:48:23] 2026-01-09 19:47:52,959 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:52,959 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:52,960 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:53,013 | INFO     | [job] control thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:53,178 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:53,184 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:53,216 | INFO     | [job] validate thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:53,606 | INFO     | [data] control thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:53,708 | INFO     | [payload] control thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:53,733 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:54,042 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:54,532 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:54,533 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:54,894 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:47:55,958 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:48:02,937 | INFO     | job.realtimelogging is not enabled
[2026-01-09 14:48:23] 2026-01-09 19:48:03,943 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:48:23] 2026-01-09 19:48:04,976 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:48:23] 2026-01-09 19:48:05,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053702457152)>', '<ExcThread(monitor, started 140052877260544)>']
[2026-01-09 14:48:23] 2026-01-09 19:48:11,007 | INFO     | all workflow threads have been joined
[2026-01-09 14:48:23] 2026-01-09 19:48:11,014 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:48:23] 2026-01-09 19:48:11,014 | INFO     | traces error code: 0
[2026-01-09 14:48:23] 2026-01-09 19:48:11,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:48:23] 2026-01-09 19:48:22,778 | INFO     | PID=18625 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 14:48:23] 2026-01-09 19:48:22,778 | INFO     | .. there are 3 such processes running
[2026-01-09 14:48:23] 2026-01-09 19:48:22,779 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:48:23] 2026-01-09 19:48:22,779 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:48:23] 2026-01-09 19:48:22,779 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:48:23] 2026-01-09 19:48:22,779 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:48:23] 2026-01-09 19:48:22,779 | INFO     | [monitor] control thread has ended
[2026-01-09 14:48:23] 2026-01-09 19:48:22,879 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:48:23] 2026-01-09 19:48:22,882 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:48:23] 2026-01-09 19:48:22,885 [wrapper] pilotpid: 18625
[2026-01-09 14:48:23] 2026-01-09 19:48:22,887 [wrapper] Pilot exit status: 0
[2026-01-09 14:48:23] 2026-01-09 19:48:22,896 [wrapper] pandaids: 6963162721 6963162721
[2026-01-09 14:48:23] 2026-01-09 19:48:22,925 [wrapper] cleanup supervisor_pilot  6814 18626
[2026-01-09 14:48:23] 2026-01-09 19:48:22,928 [wrapper] Test setup, not cleaning
[2026-01-09 14:48:23] 2026-01-09 19:48:22,931 [wrapper] apfmon messages muted
[2026-01-09 14:48:23] 2026-01-09 19:48:22,934 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:48:23] 2026-01-09 19:48:22,937 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:48:23]  *** Error codes and diagnostics ***
[2026-01-09 14:48:23]     "exeErrorCode": 0,
[2026-01-09 14:48:23]     "exeErrorDiag": "",
[2026-01-09 14:48:23]     "pilotErrorCode": 0,
[2026-01-09 14:48:23]     "pilotErrorDiag": "",
[2026-01-09 14:48:23]  *** Listing of results directory ***
[2026-01-09 14:48:23] total 662180
[2026-01-09 14:48:23] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:55 pilot3.tar.gz
[2026-01-09 14:48:23] -rwx------ 1 boincer umatlas     36322 Jan  8 19:56 runpilot2-wrapper.sh
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:56 queuedata.json
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas       100 Jan  9 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:48:23] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 08:31 run_atlas
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas       105 Jan  9 08:31 job.xml
[2026-01-09 14:48:23] -rw-r--r-- 3 boincer umatlas 224003722 Jan  9 08:31 EVNT.47898824._001307.pool.root.1
[2026-01-09 14:48:23] -rw-r--r-- 3 boincer umatlas 224003722 Jan  9 08:31 ATLAS.root_0
[2026-01-09 14:48:23] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:31 start_atlas.sh
[2026-01-09 14:48:23] drwxrwx--x 2 boincer umatlas      4096 Jan  9 08:31 shared
[2026-01-09 14:48:23] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 08:31 input.tar.gz
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas         0 Jan  9 08:31 boinc_lockfile
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 10:30 pandaJob.out
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas        57 Jan  9 10:30 setup.sh.local
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas    989377 Jan  9 10:30 agis_schedconf.cvmfs.json
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas      5951 Jan  9 14:45 init_data.xml
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas 220924377 Jan  9 14:47 HITS.47898826._034277.pool.root.1
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas      1068 Jan  9 14:47 memory_monitor_summary.json
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas       532 Jan  9 14:47 boinc_task_state.xml
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas   1516240 Jan  9 14:47 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas    471925 Jan  9 14:47 log.47898826._034277.job.log.tgz.1
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas      7860 Jan  9 14:47 heartbeat.json
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas        29 Jan  9 14:48 wrapper_checkpoint.txt
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 14:48 boinc_mmap_file
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas        96 Jan  9 14:48 pilot_heartbeat.json
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas       820 Jan  9 14:48 pilotlog.txt
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas   2141155 Jan  9 14:48 log.47898826._034277.job.log.1
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas       357 Jan  9 14:48 output.list
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas       620 Jan  9 14:48 runtime_log
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas   2631680 Jan  9 14:48 result.tar.gz
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas       786 Jan  9 14:48 MxvLDmqyFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKTgKDmXlRgsn.diag
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas      9423 Jan  9 14:48 runtime_log.err
[2026-01-09 14:48:23] -rw-r--r-- 1 boincer umatlas     23170 Jan  9 14:48 stderr.txt
[2026-01-09 14:48:23] HITS file was successfully produced:
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas 220924377 Jan  9 14:47 shared/HITS.pool.root.1
[2026-01-09 14:48:23]  *** Contents of shared directory: ***
[2026-01-09 14:48:23] total 437676
[2026-01-09 14:48:23] -rw-r--r-- 3 boincer umatlas 224003722 Jan  9 08:31 ATLAS.root_0
[2026-01-09 14:48:23] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:31 start_atlas.sh
[2026-01-09 14:48:23] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 08:31 input.tar.gz
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas 220924377 Jan  9 14:47 HITS.pool.root.1
[2026-01-09 14:48:23] -rw------- 1 boincer umatlas   2631680 Jan  9 14:48 result.tar.gz
14:48:24 (7454): run_atlas exited; CPU time 118300.660109
14:48:24 (7454): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN