Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:34:13 (5066): wrapper (7.7.26015): starting
08:34:13 (5066): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 08:34:13] Arguments: --nthreads 8
[2026-01-09 08:34:13] Threads: 8
[2026-01-09 08:34:13] Checking for CVMFS
[2026-01-09 08:34:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 08:34:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 08:34:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 08:34:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 08:34:14] 2.11.2.0 1632 29572 106236 154945 2 188 14563190 18432000 1534 130560 0 6632415 99.985 930535 44163 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 08:34:14] CVMFS is ok
[2026-01-09 08:34:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 08:34:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 08:34:14] Further information can be found at the LHC@home message board.
[2026-01-09 08:34:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 08:34:14] Checking for apptainer binary...
[2026-01-09 08:34:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 08:34:14] Running /usr/bin/apptainer --version
[2026-01-09 08:34:14] apptainer version 1.3.2-1.el7
[2026-01-09 08:34:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 08:34:14] c-206-1.aglt2.org
[2026-01-09 08:34:14] apptainer works
[2026-01-09 08:34:14] Set ATHENA_PROC_NUMBER=8
[2026-01-09 08:34:14] Set ATHENA_CORE_NUMBER=8
[2026-01-09 08:34:14] Starting ATLAS job with PandaID=6963152574
[2026-01-09 08:34:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
10:30:26 (7456): wrapper (7.7.26015): starting
10:30:26 (7456): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:30:26] Arguments: --nthreads 8
[2026-01-09 10:30:26] Threads: 8
[2026-01-09 10:30:26] This job has been restarted, cleaning up previous attempt
[2026-01-09 10:30:26] Checking for CVMFS
[2026-01-09 10:30:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:30:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:30:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:30:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:30:26] 2.11.2.0 1632 29688 103288 154948 2 11 14577483 18432000 1 130560 0 6752604 99.985 934561 44141 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 10:30:26] CVMFS is ok
[2026-01-09 10:30:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 10:30:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 10:30:26] Further information can be found at the LHC@home message board.
[2026-01-09 10:30:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:30:26] Checking for apptainer binary...
[2026-01-09 10:30:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:30:26] Running /usr/bin/apptainer --version
[2026-01-09 10:30:26] apptainer version 1.3.2-1.el7
[2026-01-09 10:30:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:30:27] c-206-1.aglt2.org
[2026-01-09 10:30:27] apptainer works
[2026-01-09 10:30:27] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:30:27] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:30:27] Starting ATLAS job with PandaID=6963152574
[2026-01-09 10:30:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:51:12]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:51:12] 2026-01-09 19:50:22,747 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:51:12] 2026-01-09 19:50:22,747 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:51:12] 2026-01-09 19:50:22,752 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:51:12] 2026-01-09 19:50:22,753 | INFO     | sum of square deviations: 5141528960.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,754 | INFO     | sum of deviations: 31636004768.999992
[2026-01-09 14:51:12] 2026-01-09 19:50:22,754 | INFO     | mean x: 1767980413.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,755 | INFO     | mean y: 2488362.756862745
[2026-01-09 14:51:12] 2026-01-09 19:50:22,755 | INFO     | intersect: -10875956009.005768
[2026-01-09 14:51:12] 2026-01-09 19:50:22,755 | INFO     | chi2: 1.3484006312131374
[2026-01-09 14:51:12] 2026-01-09 19:50:22,756 | INFO     | sum of square deviations: 4844974562.5
[2026-01-09 14:51:12] 2026-01-09 19:50:22,757 | INFO     | sum of deviations: 30802945367.50001
[2026-01-09 14:51:12] 2026-01-09 19:50:22,757 | INFO     | mean x: 1767980260.5
[2026-01-09 14:51:12] 2026-01-09 19:50:22,757 | INFO     | mean y: 2487934.452
[2026-01-09 14:51:12] 2026-01-09 19:50:22,758 | INFO     | intersect: -11237818629.07703
[2026-01-09 14:51:12] 2026-01-09 19:50:22,758 | INFO     | chi2: 1.348907625652089
[2026-01-09 14:51:12] 2026-01-09 19:50:22,758 | INFO     | current chi2=1.348907625652089 (change=-0.03759968863968944 %)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,758 | INFO     | right removable region: 249
[2026-01-09 14:51:12] 2026-01-09 19:50:22,759 | INFO     | sum of square deviations: 4844974562.5
[2026-01-09 14:51:12] 2026-01-09 19:50:22,760 | INFO     | sum of deviations: -5387210943.500002
[2026-01-09 14:51:12] 2026-01-09 19:50:22,761 | INFO     | mean x: 1767980565.5
[2026-01-09 14:51:12] 2026-01-09 19:50:22,761 | INFO     | mean y: 2507241.572
[2026-01-09 14:51:12] 2026-01-09 19:50:22,761 | INFO     | intersect: 1968355385.3530278
[2026-01-09 14:51:12] 2026-01-09 19:50:22,761 | INFO     | chi2: 0.04881238814786216
[2026-01-09 14:51:12] 2026-01-09 19:50:22,762 | INFO     | current chi2=0.04881238814786216 (change=96.37997884175222 %)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,762 | INFO     | sum of square deviations: 4560048290.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,764 | INFO     | sum of deviations: -10050542695.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,764 | INFO     | mean x: 1767980718.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,764 | INFO     | mean y: 2509710.012244898
[2026-01-09 14:51:12] 2026-01-09 19:50:22,764 | INFO     | intersect: 3899215306.126832
[2026-01-09 14:51:12] 2026-01-09 19:50:22,764 | INFO     | chi2: 0.01999171999593788
[2026-01-09 14:51:12] 2026-01-09 19:50:22,765 | INFO     | current chi2=0.01999171999593788 (change=59.04375763099503 %)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,765 | INFO     | sum of square deviations: 4286517580.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,766 | INFO     | sum of deviations: -9348232035.5
[2026-01-09 14:51:12] 2026-01-09 19:50:22,767 | INFO     | mean x: 1767980870.5
[2026-01-09 14:51:12] 2026-01-09 19:50:22,767 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6963152574: 3553944 B (within 4404019200 B limit)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,767 | INFO     | mean y: 2509317.3625
[2026-01-09 14:51:12] 2026-01-09 19:50:22,767 | INFO     | intersect: 3858202220.355161
[2026-01-09 14:51:12] 2026-01-09 19:50:22,768 | INFO     | chi2: 0.019970980059851647
[2026-01-09 14:51:12] 2026-01-09 19:50:22,768 | INFO     | current chi2=0.019970980059851647 (change=0.10374262990100788 %)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,768 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6963152574/HITS.47898826._029332.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,768 | INFO     | left removable region: 30
[2026-01-09 14:51:12] 2026-01-09 19:50:22,768 | INFO     | total size of present files: 0 B (workdir size: 3553944 B)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,769 | INFO     | sum of square deviations: 3256879670.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,770 | INFO     | sum of deviations: -3278917262.0000052
[2026-01-09 14:51:12] 2026-01-09 19:50:22,770 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6963152574/HITS.47898826._029332.pool.root.1 since it does not exist
[2026-01-09 14:51:12] 2026-01-09 19:50:22,770 | INFO     | mean x: 1767981145.0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,771 | INFO     | mean y: 2505403.3607305936
[2026-01-09 14:51:12] 2026-01-09 19:50:22,771 | INFO     | intersect: 1782449547.023562
[2026-01-09 14:51:12] 2026-01-09 19:50:22,771 | INFO     | chi2: 0.014363616522220072
[2026-01-09 14:51:12] 2026-01-09 19:50:22,772 | INFO     | current memory leak: -1.01 B/s (using 219 data points, chi2=0.01)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,772 | INFO     | could have reported an average CPU frequency of 2354 MHz (12 samples)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,772 | INFO     | ..............................
[2026-01-09 14:51:12] 2026-01-09 19:50:22,772 | INFO     | . Timing measurements:
[2026-01-09 14:51:12] 2026-01-09 19:50:22,772 | INFO     | . get job = 0 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,773 | INFO     | . initial setup = 1 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,773 | INFO     | . payload setup = 6 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,773 | INFO     | . stage-in = 0 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,773 | INFO     | . payload execution = 15550 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,773 | INFO     | . stage-out = 2 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,773 | INFO     | . log creation = 0 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,773 | INFO     | ..............................
[2026-01-09 14:51:12] 2026-01-09 19:50:22,856 | INFO     | 
[2026-01-09 14:51:12] 2026-01-09 19:50:22,856 | INFO     | job summary report
[2026-01-09 14:51:12] 2026-01-09 19:50:22,856 | INFO     | --------------------------------------------------
[2026-01-09 14:51:12] 2026-01-09 19:50:22,856 | INFO     | PanDA job id: 6963152574
[2026-01-09 14:51:12] 2026-01-09 19:50:22,856 | INFO     | task id: 47898826
[2026-01-09 14:51:12] 2026-01-09 19:50:22,857 | INFO     | errors: (none)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,857 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:51:12] 2026-01-09 19:50:22,857 | INFO     | pilot state: finished 
[2026-01-09 14:51:12] 2026-01-09 19:50:22,857 | INFO     | transexitcode: 0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,857 | INFO     | exeerrorcode: 0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,857 | INFO     | exeerrordiag: 
[2026-01-09 14:51:12] 2026-01-09 19:50:22,858 | INFO     | exitcode: 0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,858 | INFO     | exitmsg: OK
[2026-01-09 14:51:12] 2026-01-09 19:50:22,858 | INFO     | cpuconsumptiontime: 118582 s
[2026-01-09 14:51:12] 2026-01-09 19:50:22,858 | INFO     | nevents: 400
[2026-01-09 14:51:12] 2026-01-09 19:50:22,858 | INFO     | neventsw: 0
[2026-01-09 14:51:12] 2026-01-09 19:50:22,858 | INFO     | pid: 5582
[2026-01-09 14:51:12] 2026-01-09 19:50:22,859 | INFO     | pgrp: 5582
[2026-01-09 14:51:12] 2026-01-09 19:50:22,859 | INFO     | corecount: 8
[2026-01-09 14:51:12] 2026-01-09 19:50:22,859 | INFO     | event service: False
[2026-01-09 14:51:12] 2026-01-09 19:50:22,859 | INFO     | sizes: {0: 2283797, 1: 2283996, 5: 2284258, 11: 2284314, 15560: 2315352, 15563: 2324534, 15567: 2324700}
[2026-01-09 14:51:12] 2026-01-09 19:50:22,859 | INFO     | --------------------------------------------------
[2026-01-09 14:51:12] 2026-01-09 19:50:22,859 | INFO     | 
[2026-01-09 14:51:12] 2026-01-09 19:50:22,860 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 14:51:12] 2026-01-09 19:50:22,880 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,893 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,894 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,894 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,894 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,894 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,894 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,895 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,895 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,895 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,895 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,895 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,895 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,896 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,896 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,896 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,896 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,896 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,896 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,897 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:51:12] 2026-01-09 19:50:22,897 | INFO     | job 6963152574 has completed (purged errors)
[2026-01-09 14:51:12] 2026-01-09 19:50:22,897 | INFO     | overall cleanup function is called
[2026-01-09 14:51:12] 2026-01-09 19:50:22,962 | INFO     | number of running child processes to parent process 5582: 1
[2026-01-09 14:51:12] 2026-01-09 19:50:22,962 | INFO     | maximum number of monitored processes: 6
[2026-01-09 14:51:12] 2026-01-09 19:50:22,962 | INFO     | aborting job monitoring since job object (job id=6963152574) has expired
[2026-01-09 14:51:12] 2026-01-09 19:50:23,905 | INFO     | --- collectZombieJob: --- 10, [5582]
[2026-01-09 14:51:12] 2026-01-09 19:50:23,905 | INFO     | zombie collector waiting for pid 5582
[2026-01-09 14:51:12] 2026-01-09 19:50:23,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:51:12] 2026-01-09 19:50:23,905 | INFO     | collected zombie processes
[2026-01-09 14:51:12] 2026-01-09 19:50:23,906 | INFO     | will attempt to kill all subprocesses of pid=5582
[2026-01-09 14:51:12] 2026-01-09 19:50:24,000 | INFO     | process IDs to be killed: [5582] (in reverse order)
[2026-01-09 14:51:12] 2026-01-09 19:50:24,051 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:51:12] 2026-01-09 19:50:24,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:51:12] 2026-01-09 19:50:24,054 | INFO     | did not find any defunct processes belonging to 5582
[2026-01-09 14:51:12] 2026-01-09 19:50:24,056 | INFO     | did not find any defunct processes belonging to 5582
[2026-01-09 14:51:12] 2026-01-09 19:50:24,056 | INFO     | ready for new job
[2026-01-09 14:51:12] 2026-01-09 19:50:24,056 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:51:12] 2026-01-09 19:50:24,058 | INFO     | ***************************************
[2026-01-09 14:51:12] 2026-01-09 19:50:24,058 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:51:12] 2026-01-09 19:50:24,058 | INFO     | ***************************************
[2026-01-09 14:51:12] 2026-01-09 19:50:24,058 | INFO     | 
[2026-01-09 14:51:12] 2026-01-09 19:50:24,059 | INFO     | architecture information:
[2026-01-09 14:51:12] 2026-01-09 19:50:24,059 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:51:12] 2026-01-09 19:50:24,075 | INFO     | cat /etc/os-release:
[2026-01-09 14:51:12] NAME="CentOS Linux"
[2026-01-09 14:51:12] VERSION="7 (Core)"
[2026-01-09 14:51:12] ID="centos"
[2026-01-09 14:51:12] ID_LIKE="rhel fedora"
[2026-01-09 14:51:12] VERSION_ID="7"
[2026-01-09 14:51:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:51:12] ANSI_COLOR="0;31"
[2026-01-09 14:51:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:51:12] HOME_URL="https://www.centos.org/"
[2026-01-09 14:51:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:51:12] 
[2026-01-09 14:51:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:51:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:51:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:51:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:51:12] 
[2026-01-09 14:51:12] 2026-01-09 19:50:24,075 | INFO     | ***************************************
[2026-01-09 14:51:12] 2026-01-09 19:50:24,578 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 14:51:12] 2026-01-09 19:50:24,595 | INFO     | sufficient remaining disk space (28995223552 B)
[2026-01-09 14:51:12] 2026-01-09 19:50:24,595 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:51:12] 2026-01-09 19:50:24,595 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:51:12] 2026-01-09 19:50:24,596 | INFO     | update_server=False
[2026-01-09 14:51:12] 2026-01-09 19:50:24,596 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:51:12] 2026-01-09 19:50:24,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:51:12] 2026-01-09 19:50:24,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:51:12] 2026-01-09 19:50:24,596 | INFO     | aborting loop
[2026-01-09 14:51:12] 2026-01-09 19:50:24,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:51:12] 2026-01-09 19:50:24,655 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:51:12] 2026-01-09 19:50:25,267 | INFO     | all payload control threads have been joined
[2026-01-09 14:51:12] 2026-01-09 19:50:25,423 | INFO     | all data control threads have been joined
[2026-01-09 14:51:12] 2026-01-09 19:50:25,601 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:25,602 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:25,602 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:25,838 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:25,847 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:25,866 | INFO     | [job] validate thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:25,933 | INFO     | all job control threads have been joined
[2026-01-09 14:51:12] 2026-01-09 19:50:26,272 | INFO     | [payload] control thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:26,341 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:26,424 | INFO     | [data] control thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:26,475 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:26,602 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:26,938 | INFO     | [job] control thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:26,976 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:26,978 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:28,661 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:34,965 | INFO     | job.realtimelogging is not enabled
[2026-01-09 14:51:12] 2026-01-09 19:50:35,971 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:51:12] 2026-01-09 19:50:55,075 | INFO     | PID=18631 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 14:51:12] 2026-01-09 19:50:55,075 | INFO     | .. there are 2 such processes running
[2026-01-09 14:51:12] 2026-01-09 19:50:55,075 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:51:12] 2026-01-09 19:50:55,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:51:12] 2026-01-09 19:50:55,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:51:12] 2026-01-09 19:51:05,158 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:51:12] 2026-01-09 19:51:06,879 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140366549485376)>', '<ExcThread(monitor, started 140365856216832)>']
[2026-01-09 14:51:12] 2026-01-09 19:51:07,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:51:12] 2026-01-09 19:51:07,128 | INFO     | [monitor] control thread has ended
[2026-01-09 14:51:12] 2026-01-09 19:51:11,905 | INFO     | all workflow threads have been joined
[2026-01-09 14:51:12] 2026-01-09 19:51:11,905 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:51:12] 2026-01-09 19:51:11,905 | INFO     | traces error code: 0
[2026-01-09 14:51:12] 2026-01-09 19:51:11,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:51:12] 2026-01-09 19:51:11,995 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:51:12] 2026-01-09 19:51:11,998 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:51:12] 2026-01-09 19:51:12,002 [wrapper] pilotpid: 18631
[2026-01-09 14:51:12] 2026-01-09 19:51:12,005 [wrapper] Pilot exit status: 0
[2026-01-09 14:51:12] 2026-01-09 19:51:12,016 [wrapper] pandaids: 6963152574 6963152574
[2026-01-09 14:51:12] 2026-01-09 19:51:12,058 [wrapper] cleanup supervisor_pilot  6813 18632
[2026-01-09 14:51:12] 2026-01-09 19:51:12,061 [wrapper] Test setup, not cleaning
[2026-01-09 14:51:12] 2026-01-09 19:51:12,065 [wrapper] apfmon messages muted
[2026-01-09 14:51:12] 2026-01-09 19:51:12,069 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:51:12] 2026-01-09 19:51:12,072 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:51:12]  *** Error codes and diagnostics ***
[2026-01-09 14:51:12]     "exeErrorCode": 0,
[2026-01-09 14:51:12]     "exeErrorDiag": "",
[2026-01-09 14:51:12]     "pilotErrorCode": 0,
[2026-01-09 14:51:12]     "pilotErrorDiag": "",
[2026-01-09 14:51:12]  *** Listing of results directory ***
[2026-01-09 14:51:12] total 659956
[2026-01-09 14:51:12] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 14:51:12] -rwx------ 1 boincer umatlas     36322 Jan  8 11:06 runpilot2-wrapper.sh
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas       100 Jan  9 08:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:51:12] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 08:34 run_atlas
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas       105 Jan  9 08:34 job.xml
[2026-01-09 14:51:12] -rw-r--r-- 3 boincer umatlas 223258574 Jan  9 08:34 EVNT.47898824._000874.pool.root.1
[2026-01-09 14:51:12] -rw-r--r-- 3 boincer umatlas 223258574 Jan  9 08:34 ATLAS.root_0
[2026-01-09 14:51:12] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:34 start_atlas.sh
[2026-01-09 14:51:12] drwxrwx--x 2 boincer umatlas      4096 Jan  9 08:34 shared
[2026-01-09 14:51:12] -rw-r--r-- 2 boincer umatlas    592392 Jan  9 08:34 input.tar.gz
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas         0 Jan  9 08:34 boinc_lockfile
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas      2518 Jan  9 10:30 pandaJob.out
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas        57 Jan  9 10:30 setup.sh.local
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas    989377 Jan  9 10:30 agis_schedconf.cvmfs.json
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas      5951 Jan  9 14:45 init_data.xml
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas 220075935 Jan  9 14:49 HITS.47898826._029332.pool.root.1
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas       532 Jan  9 14:50 boinc_task_state.xml
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas      1068 Jan  9 14:50 memory_monitor_summary.json
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas   1516240 Jan  9 14:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas    479783 Jan  9 14:50 log.47898826._029332.job.log.tgz.1
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas        96 Jan  9 14:50 pilot_heartbeat.json
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas      7860 Jan  9 14:50 heartbeat.json
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 14:51 boinc_mmap_file
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas        29 Jan  9 14:51 wrapper_checkpoint.txt
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas      4893 Jan  9 14:51 pilotlog.txt
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas   2161325 Jan  9 14:51 log.47898826._029332.job.log.1
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas       357 Jan  9 14:51 output.list
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas       620 Jan  9 14:51 runtime_log
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas   2662400 Jan  9 14:51 result.tar.gz
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas      9423 Jan  9 14:51 runtime_log.err
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas       787 Jan  9 14:51 QqfNDmCi7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm74kKDmG7OgVn.diag
[2026-01-09 14:51:12] -rw-r--r-- 1 boincer umatlas     23383 Jan  9 14:51 stderr.txt
[2026-01-09 14:51:12] HITS file was successfully produced:
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas 220075935 Jan  9 14:49 shared/HITS.pool.root.1
[2026-01-09 14:51:12]  *** Contents of shared directory: ***
[2026-01-09 14:51:12] total 436148
[2026-01-09 14:51:12] -rw-r--r-- 3 boincer umatlas 223258574 Jan  9 08:34 ATLAS.root_0
[2026-01-09 14:51:12] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 08:34 start_atlas.sh
[2026-01-09 14:51:12] -rw-r--r-- 2 boincer umatlas    592392 Jan  9 08:34 input.tar.gz
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas 220075935 Jan  9 14:49 HITS.pool.root.1
[2026-01-09 14:51:12] -rw------- 1 boincer umatlas   2662400 Jan  9 14:51 result.tar.gz
14:51:13 (7456): run_atlas exited; CPU time 118800.781894
14:51:13 (7456): called boinc_finish(0)

</stderr_txt>
]]>

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