Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:11:56 (1800364): wrapper (7.7.26015): starting
09:11:56 (1800364): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 09:11:56] Arguments: --nthreads 8
[2026-01-09 09:11:56] Threads: 8
[2026-01-09 09:11:56] Checking for CVMFS
[2026-01-09 09:11:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:11:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:11:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:11:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:11:57] 2.13.3.0 6454 22297 197188 154945 2 467 23892654 40960000 9862 16776704 0 22244660 99.739 14017483 41221 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 09:11:57] CVMFS is ok
[2026-01-09 09:11:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:11:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:11:58] Further information can be found at the LHC@home message board.
[2026-01-09 09:11:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:11:58] Checking for apptainer binary...
[2026-01-09 09:11:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:11:58] Running /usr/bin/apptainer --version
[2026-01-09 09:11:58] apptainer version 1.4.5-2.el9
[2026-01-09 09:11:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:11:58] c-206-40.aglt2.org
[2026-01-09 09:11:58] apptainer works
[2026-01-09 09:11:58] Set ATHENA_PROC_NUMBER=8
[2026-01-09 09:11:58] Set ATHENA_CORE_NUMBER=8
[2026-01-09 09:11:58] Starting ATLAS job with PandaID=6963152351
[2026-01-09 09:11:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:15:44]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:16:04] 2026-01-09 17:15:01,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:16:04] 2026-01-09 17:15:01,708 | INFO     | time since job start (10907s) is within the limit (349056.0s)
[2026-01-09 12:16:04] 2026-01-09 17:15:03,714 | INFO     | time since job start (10909s) is within the limit (349056.0s)
[2026-01-09 12:16:04] 2026-01-09 17:15:04,131 | INFO     | monitor loop #735: job 0:6963152351 is in state 'finished'
[2026-01-09 12:16:04] 2026-01-09 17:15:04,131 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:16:04] 2026-01-09 17:15:05,720 | INFO     | time since job start (10911s) is within the limit (349056.0s)
[2026-01-09 12:16:04] 2026-01-09 17:15:06,635 | INFO     | monitor loop #736: job 0:6963152351 is in state 'finished'
[2026-01-09 12:16:04] 2026-01-09 17:15:06,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,318 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 12:16:04] 2026-01-09 17:15:07,353 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3292.4819375
[2026-01-09 12:16:04] 2026-01-09 17:15:07,422 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963152351/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,423 | INFO     | extracted standard info from prmon json
[2026-01-09 12:16:04] 2026-01-09 17:15:07,423 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 12:16:04] 2026-01-09 17:15:07,423 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 12:16:04] 2026-01-09 17:15:07,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:16:04] 2026-01-09 17:15:07,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:16:04] 2026-01-09 17:15:07,462 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:16:04] 2026-01-09 17:15:07,462 | INFO     | sum of square deviations: 1719161872.3163843
[2026-01-09 12:16:04] 2026-01-09 17:15:07,463 | INFO     | sum of deviations: 3662109714.016958
[2026-01-09 12:16:04] 2026-01-09 17:15:07,463 | INFO     | mean x: 1767973509.937853
[2026-01-09 12:16:04] 2026-01-09 17:15:07,464 | INFO     | mean y: 2536886.7288135593
[2026-01-09 12:16:04] 2026-01-09 17:15:07,464 | INFO     | intersect: -3763549989.1651735
[2026-01-09 12:16:04] 2026-01-09 17:15:07,464 | INFO     | chi2: 4.334141353463365
[2026-01-09 12:16:04] 2026-01-09 17:15:07,464 | INFO     | sum of square deviations: 1577562080.7151165
[2026-01-09 12:16:04] 2026-01-09 17:15:07,465 | INFO     | sum of deviations: 15114137420.244183
[2026-01-09 12:16:04] 2026-01-09 17:15:07,465 | INFO     | mean x: 1767973357.4593024
[2026-01-09 12:16:04] 2026-01-09 17:15:07,465 | INFO     | mean y: 2548945.034883721
[2026-01-09 12:16:04] 2026-01-09 17:15:07,465 | INFO     | intersect: -16935860393.415653
[2026-01-09 12:16:04] 2026-01-09 17:15:07,465 | INFO     | chi2: 3.692952433827885
[2026-01-09 12:16:04] 2026-01-09 17:15:07,465 | INFO     | current chi2=3.692952433827885 (change=14.793908812482842 %)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,465 | INFO     | right removable region: 171
[2026-01-09 12:16:04] 2026-01-09 17:15:07,466 | INFO     | sum of square deviations: 1577471372.7906997
[2026-01-09 12:16:04] 2026-01-09 17:15:07,466 | INFO     | sum of deviations: -46633470084.81395
[2026-01-09 12:16:04] 2026-01-09 17:15:07,467 | INFO     | mean x: 1767973662.4651163
[2026-01-09 12:16:04] 2026-01-09 17:15:07,467 | INFO     | mean y: 2590844.947674419
[2026-01-09 12:16:04] 2026-01-09 17:15:07,467 | INFO     | intersect: 52267721180.37156
[2026-01-09 12:16:04] 2026-01-09 17:15:07,467 | INFO     | chi2: 1.1872870715128636
[2026-01-09 12:16:04] 2026-01-09 17:15:07,467 | INFO     | current chi2=1.1872870715128636 (change=72.60617560236896 %)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,467 | INFO     | sum of square deviations: 1443812011.904197
[2026-01-09 12:16:04] 2026-01-09 17:15:07,468 | INFO     | sum of deviations: -54919654746.868256
[2026-01-09 12:16:04] 2026-01-09 17:15:07,468 | INFO     | mean x: 1767973814.976048
[2026-01-09 12:16:04] 2026-01-09 17:15:07,468 | INFO     | mean y: 2600165.5329341316
[2026-01-09 12:16:04] 2026-01-09 17:15:07,468 | INFO     | intersect: 67252706633.292984
[2026-01-09 12:16:04] 2026-01-09 17:15:07,468 | INFO     | chi2: 0.9814253713052984
[2026-01-09 12:16:04] 2026-01-09 17:15:07,468 | INFO     | current chi2=0.9814253713052984 (change=17.33883111733478 %)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,469 | INFO     | left removable region: 20
[2026-01-09 12:16:04] 2026-01-09 17:15:07,469 | INFO     | sum of square deviations: 1067255584.0
[2026-01-09 12:16:04] 2026-01-09 17:15:07,469 | INFO     | sum of deviations: -38394401851.99999
[2026-01-09 12:16:04] 2026-01-09 17:15:07,469 | INFO     | mean x: 1767973937.0
[2026-01-09 12:16:04] 2026-01-09 17:15:07,469 | INFO     | mean y: 2610035.9933774834
[2026-01-09 12:16:04] 2026-01-09 17:15:07,470 | INFO     | intersect: 63605277305.842514
[2026-01-09 12:16:04] 2026-01-09 17:15:07,470 | INFO     | chi2: 0.25208229129096527
[2026-01-09 12:16:04] 2026-01-09 17:15:07,470 | INFO     | current memory leak: -35.97 B/s (using 151 data points, chi2=0.25)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,470 | INFO     | could have reported an average CPU frequency of 3286 MHz (9 samples)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,470 | INFO     | ..............................
[2026-01-09 12:16:04] 2026-01-09 17:15:07,470 | INFO     | . Timing measurements:
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | . get job = 0 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | . initial setup = 6 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | . payload setup = 55 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | . stage-in = 0 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | . payload execution = 10772 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | . stage-out = 5 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | . log creation = 0 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,471 | INFO     | ..............................
[2026-01-09 12:16:04] 2026-01-09 17:15:07,744 | INFO     | time since job start (10913s) is within the limit (349056.0s)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,755 | INFO     | 
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | job summary report
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | --------------------------------------------------
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | PanDA job id: 6963152351
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | task id: 47898826
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | errors: (none)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | pilot state: finished 
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | transexitcode: 0
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | exeerrorcode: 0
[2026-01-09 12:16:04] 2026-01-09 17:15:07,756 | INFO     | exeerrordiag: 
[2026-01-09 12:16:04] 2026-01-09 17:15:07,772 | INFO     | exitcode: 0
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | exitmsg: OK
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | cpuconsumptiontime: 46800 s
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | nevents: 400
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | neventsw: 0
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | pid: 1820987
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | pgrp: 1820987
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | corecount: 8
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | event service: False
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | sizes: {0: 2283797, 1: 2283996, 12: 2283996, 23: 2284024, 29: 2284314, 33: 2284342, 10833: 2313636, 10834: 2313635, 10840: 2322745, 10853: 2322947}
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | --------------------------------------------------
[2026-01-09 12:16:04] 2026-01-09 17:15:07,773 | INFO     | 
[2026-01-09 12:16:04] 2026-01-09 17:15:07,774 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,803 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | job 6963152351 has completed (purged errors)
[2026-01-09 12:16:04] 2026-01-09 17:15:07,804 | INFO     | overall cleanup function is called
[2026-01-09 12:16:04] 2026-01-09 17:15:08,813 | INFO     | --- collectZombieJob: --- 10, [1820987]
[2026-01-09 12:16:04] 2026-01-09 17:15:08,814 | INFO     | zombie collector waiting for pid 1820987
[2026-01-09 12:16:04] 2026-01-09 17:15:08,814 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:16:04] 2026-01-09 17:15:08,814 | INFO     | collected zombie processes
[2026-01-09 12:16:04] 2026-01-09 17:15:08,814 | INFO     | will attempt to kill all subprocesses of pid=1820987
[2026-01-09 12:16:04] 2026-01-09 17:15:09,249 | INFO     | process IDs to be killed: [1820987] (in reverse order)
[2026-01-09 12:16:04] 2026-01-09 17:15:09,381 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:16:04] 2026-01-09 17:15:09,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:16:04] 2026-01-09 17:15:09,395 | INFO     | did not find any defunct processes belonging to 1820987
[2026-01-09 12:16:04] 2026-01-09 17:15:09,405 | INFO     | did not find any defunct processes belonging to 1820987
[2026-01-09 12:16:04] 2026-01-09 17:15:09,405 | INFO     | ready for new job
[2026-01-09 12:16:04] 2026-01-09 17:15:09,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:16:04] 2026-01-09 17:15:09,408 | INFO     | ***************************************
[2026-01-09 12:16:04] 2026-01-09 17:15:09,409 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:16:04] 2026-01-09 17:15:09,409 | INFO     | ***************************************
[2026-01-09 12:16:04] 2026-01-09 17:15:09,409 | INFO     | 
[2026-01-09 12:16:04] 2026-01-09 17:15:09,440 | INFO     | architecture information:
[2026-01-09 12:16:04] 2026-01-09 17:15:09,463 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:16:04] 2026-01-09 17:15:09,551 | INFO     | cat /etc/os-release:
[2026-01-09 12:16:04] NAME="CentOS Linux"
[2026-01-09 12:16:04] VERSION="7 (Core)"
[2026-01-09 12:16:04] ID="centos"
[2026-01-09 12:16:04] ID_LIKE="rhel fedora"
[2026-01-09 12:16:04] VERSION_ID="7"
[2026-01-09 12:16:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:16:04] ANSI_COLOR="0;31"
[2026-01-09 12:16:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:16:04] HOME_URL="https://www.centos.org/"
[2026-01-09 12:16:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:16:04] 
[2026-01-09 12:16:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:16:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:16:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:16:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:16:04] 
[2026-01-09 12:16:04] 2026-01-09 17:15:09,553 | INFO     | ***************************************
[2026-01-09 12:16:04] 2026-01-09 17:15:10,067 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 12:16:04] 2026-01-09 17:15:10,139 | INFO     | sufficient remaining disk space (84966113280 B)
[2026-01-09 12:16:04] 2026-01-09 17:15:10,139 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:16:04] 2026-01-09 17:15:10,140 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:16:04] 2026-01-09 17:15:10,140 | INFO     | update_server=False
[2026-01-09 12:16:04] 2026-01-09 17:15:10,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:16:04] 2026-01-09 17:15:10,140 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:16:04] 2026-01-09 17:15:10,144 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:16:04] 2026-01-09 17:15:10,145 | INFO     | aborting loop
[2026-01-09 12:16:04] 2026-01-09 17:15:10,180 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:16:04] 2026-01-09 17:15:10,210 | INFO     | all data control threads have been joined
[2026-01-09 12:16:04] 2026-01-09 17:15:10,823 | INFO     | all payload control threads have been joined
[2026-01-09 12:16:04] 2026-01-09 17:15:11,154 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:11,155 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:11,219 | INFO     | [data] control thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:11,235 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:11,299 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:11,304 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:11,448 | INFO     | all job control threads have been joined
[2026-01-09 12:16:04] 2026-01-09 17:15:11,833 | INFO     | [payload] control thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,107 | INFO     | [job] validate thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,111 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,114 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,244 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,381 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,455 | INFO     | [job] control thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,576 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:12,768 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:16:04] 2026-01-09 17:15:13,775 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:14,167 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:16:04] 2026-01-09 17:15:33,590 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:16:04] 2026-01-09 17:15:35,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515781220160)>', '<ExcThread(monitor, started 140515508983552)>']
[2026-01-09 12:16:04] 2026-01-09 17:15:40,383 | INFO     | all workflow threads have been joined
[2026-01-09 12:16:04] 2026-01-09 17:15:40,384 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:16:04] 2026-01-09 17:15:40,384 | INFO     | traces error code: 0
[2026-01-09 12:16:04] 2026-01-09 17:15:40,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:16:04] 2026-01-09 17:15:41,556 | INFO     | PID=1804702 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 12:16:04] 2026-01-09 17:15:41,557 | INFO     | .. there are 16 such processes running
[2026-01-09 12:16:04] 2026-01-09 17:15:41,557 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:16:04] 2026-01-09 17:15:41,557 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:16:04] 2026-01-09 17:15:41,557 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:16:04] 2026-01-09 17:15:41,557 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:16:04] 2026-01-09 17:15:41,557 | INFO     | [monitor] control thread has ended
[2026-01-09 12:16:04] 2026-01-09 17:15:43,197 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:16:04] 2026-01-09 17:15:43,273 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:16:04] 2026-01-09 17:15:43,309 [wrapper] pilotpid: 1804702
[2026-01-09 12:16:04] 2026-01-09 17:15:43,344 [wrapper] Pilot exit status: 0
[2026-01-09 12:16:04] 2026-01-09 17:15:43,507 [wrapper] pandaids: 6963152351
[2026-01-09 12:16:04] 2026-01-09 17:15:43,984 [wrapper] cleanup supervisor_pilot 2410460 1804703
[2026-01-09 12:16:04] 2026-01-09 17:15:43,988 [wrapper] Test setup, not cleaning
[2026-01-09 12:16:04] 2026-01-09 17:15:43,991 [wrapper] apfmon messages muted
[2026-01-09 12:16:04] 2026-01-09 17:15:43,993 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:16:04] 2026-01-09 17:15:43,996 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:16:04]  *** Error codes and diagnostics ***
[2026-01-09 12:16:04]     "exeErrorCode": 0,
[2026-01-09 12:16:04]     "exeErrorDiag": "",
[2026-01-09 12:16:04]     "pilotErrorCode": 0,
[2026-01-09 12:16:04]     "pilotErrorDiag": "",
[2026-01-09 12:16:04]  *** Listing of results directory ***
[2026-01-09 12:16:04] total 442284
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 12:16:04] -rwx------. 1 boincer umatlas     36322 Jan  8 11:06 runpilot2-wrapper.sh
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas       100 Jan  9 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:16:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 09:11 run_atlas
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas       105 Jan  9 09:11 job.xml
[2026-01-09 12:16:04] -rw-r--r--. 2 boincer umatlas 225403720 Jan  9 09:11 EVNT.47898824._000867.pool.root.1
[2026-01-09 12:16:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:11 start_atlas.sh
[2026-01-09 12:16:04] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 09:11 shared
[2026-01-09 12:16:04] -rw-r--r--. 2 boincer umatlas    592393 Jan  9 09:11 input.tar.gz
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas         0 Jan  9 09:11 boinc_lockfile
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 09:11 pandaJob.out
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas        57 Jan  9 09:12 setup.sh.local
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas    989377 Jan  9 09:13 agis_schedconf.cvmfs.json
[2026-01-09 12:16:04] drwx------. 5 boincer umatlas      4096 Jan  9 09:13 pilot3
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas      6907 Jan  9 12:11 init_data.xml
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas 219877928 Jan  9 12:14 HITS.47898826._029152.pool.root.1
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas       531 Jan  9 12:14 boinc_task_state.xml
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas      1035 Jan  9 12:14 memory_monitor_summary.json
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas        95 Jan  9 12:14 pilot_heartbeat.json
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas   1516240 Jan  9 12:14 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas    399912 Jan  9 12:14 log.47898826._029152.job.log.tgz.1
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas      7783 Jan  9 12:15 heartbeat.json
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas       823 Jan  9 12:15 pilotlog.txt
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas   1452590 Jan  9 12:15 log.47898826._029152.job.log.1
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas       357 Jan  9 12:15 output.list
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas       620 Jan  9 12:15 runtime_log
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas   1873920 Jan  9 12:15 result.tar.gz
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 12:15 runtime_log.err
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas       656 Jan  9 12:15 2hLNDmAi7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmn3kKDm4StQJm.diag
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas        28 Jan  9 12:15 wrapper_checkpoint.txt
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 12:16 boinc_mmap_file
[2026-01-09 12:16:04] -rw-r--r--. 1 boincer umatlas     19246 Jan  9 12:16 stderr.txt
[2026-01-09 12:16:04] HITS file was successfully produced:
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas 219877928 Jan  9 12:14 shared/HITS.pool.root.1
[2026-01-09 12:16:04]  *** Contents of shared directory: ***
[2026-01-09 12:16:04] total 437284
[2026-01-09 12:16:04] -rw-r--r--. 2 boincer umatlas 225403720 Jan  9 09:11 ATLAS.root_0
[2026-01-09 12:16:04] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 09:11 start_atlas.sh
[2026-01-09 12:16:04] -rw-r--r--. 2 boincer umatlas    592393 Jan  9 09:11 input.tar.gz
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas 219877928 Jan  9 12:14 HITS.pool.root.1
[2026-01-09 12:16:04] -rw-------. 1 boincer umatlas   1873920 Jan  9 12:15 result.tar.gz
12:16:06 (1800364): run_atlas exited; CPU time 46982.528411
12:16:06 (1800364): called boinc_finish(0)

</stderr_txt>
]]>

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